prot_F-serratus_M_contig14.2865.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig14.2865.1
Unique Nameprot_F-serratus_M_contig14.2865.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length350
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2865.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 224..257
e-value: 1.5E-4
score: 19.7
coord: 101..134
e-value: 5.1E-9
score: 33.8
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 175..199
e-value: 0.012
score: 15.8
coord: 224..247
e-value: 0.016
score: 15.4
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 87..147
e-value: 1.2E-10
score: 41.3
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 172..206
score: 9.865
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 257..292
score: 6.84
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 294..324
score: 5.053
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..29
score: 5.546
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 134..164
score: 7.311
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 99..133
score: 12.54
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 63..98
score: 10.172
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 221..256
score: 11.772
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..208
e-value: 1.5E-37
score: 131.6
coord: 209..346
e-value: 1.4E-21
score: 79.1
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 3..200
coord: 217..323

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:8070..14646 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2865.1mRNA_F-serratus_M_contig14.2865.1Fucus serratus malemRNAF-serratus_M_contig14 8042..14793 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig14.2865.1 ID=prot_F-serratus_M_contig14.2865.1|Name=mRNA_F-serratus_M_contig14.2865.1|organism=Fucus serratus male|type=polypeptide|length=350bp
MSYTYAIAACRASEQPEKALSLLRRISGNSDGGSDGGSEGDGDDDGDDGS
KVGSGAMEKVTPNAFHYTAVVSAFVEREGGWRQALILLKEMQTLGVAPNA
YTYNAVISACGKAGRYAQAVALLRQMSTVGIAPDQLTYVSAIKACGDGKQ
WPLAVALLREMSASTSGDLTPDVMAYTAAITACGDSGQWERALDLLREIT
SPTLPPVGADQHTTVEGLVPDEIAYNATISALGKGGQWRRALELLLEEMP
RVGLSPSSASFEPAIVACAEAGEWKQAVALLNKIEARVGVEPLSASCYSA
VIRACRVAGARETALALTERAEAVRGKGRRGRPASNKKLSKAVTGASAT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf