prot_F-serratus_M_contig1379.2752.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1379.2752.1
Unique Nameprot_F-serratus_M_contig1379.2752.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length294
Homology
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BLAST of mRNA_F-serratus_M_contig1379.2752.1 vs. uniprot
Match: A0A6H5JCH7_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCH7_9PHAE)

HSP 1 Score: 270 bits (689), Expect = 4.180e-81
Identity = 179/259 (69.11%), Postives = 194/259 (74.90%), Query Frame = 0 
Query:   43 EILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGVIESVSINRDDRTHRGRGFAFVKFFQESAALNAVVADASTHVIRGTTVSVQWSRGAKD---GGDRPRRXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXXX--------CGGGCSRGFSPLRNRSQSH-VHQAGSXXXGMPFAYXXXXXXXGGDHLNQPMVCVVVPAQRAAALGLSHLPQHAM---GSCASRGSSP 286
            E+LDGSDVLQQISNVTSTEPSNEREVFVGGLRESED+VHITEEELATYF+KFGVIESVSINRDDRT RGRGFAFVKFFQE+AALNAVVADASTHVIRGTTVSVQWSRGAKD   GGDRPRRXXXXXXXXXXXXXXXP                    XXXXXXX        CG GCS GFSP+R+R   H +H   +   G+P+ +        G+H NQPMVCVVVPAQRAAALG +  P H     G C SRG++P
Sbjct:  216 EVLDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDAVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQEAAALNAVVADASTHVIRGTTVSVQWSRGAKDAGSGGDRPRRXXXXXXXXXXXXXXXPSNGSGRSCARPGMFPHKGGGXXXXXXXXXXXXAGACGVGCSHGFSPMRSRGAGHSMHGPSAGGGGVPYGFGGGRH---GEHHNQPMVCVVVPAQRAAALGFAPHPPHGFHSTGKCTSRGTAP 471
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BLAST of mRNA_F-serratus_M_contig1379.2752.1 vs. uniprot
Match: D7FM19_ECTSI (RNA recognition motif. (A.k.a. RRM, RBD, or RNP domain) containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM19_ECTSI)

HSP 1 Score: 149 bits (377), Expect = 1.850e-39
Identity = 75/80 (93.75%), Postives = 79/80 (98.75%), Query Frame = 0 
Query:   43 EILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGVIESVSINRDDRTHRGRGFAFVKFFQE 122
            E+LDGSDVLQQISN+TSTEPSNEREVFVGGLRESED+VHITEEELATYF+KFGVIESVSINRDDRT RGRGFAFVKFFQE
Sbjct:  216 EVLDGSDVLQQISNLTSTEPSNEREVFVGGLRESEDAVHITEEELATYFAKFGVIESVSINRDDRTQRGRGFAFVKFFQE 295
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BLAST of mRNA_F-serratus_M_contig1379.2752.1 vs. uniprot
Match: D7FM18_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM18_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 1.410e-14
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = 0 
Query:  204 CGGGCSRGFSPLRNRSQSH-VHQAGSXXXGMPFAYXXXXXXXGGDHLNQPMVCVVVPAQRAAALGLSHLPQHAM---GSCASRGSSP 286
            CG GCS GFSP+R+R   H +H   +   G+P+ Y        G+H NQPMVCVVVPAQRAAALGL+  P H +   G C SRG++P
Sbjct:   25 CGVGCSNGFSPMRSRGAGHSIHGPSAGGGGVPYGYGGGRH---GEHHNQPMVCVVVPAQRAAALGLAPHPPHGLHSTGKCTSRGTAP 108
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BLAST of mRNA_F-serratus_M_contig1379.2752.1 vs. uniprot
Match: A0A7J7L5F8_9MAGN (RRM domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7L5F8_9MAGN)

HSP 1 Score: 54.3 bits (129), Expect = 7.340e-6
Identity = 36/90 (40.00%), Postives = 50/90 (55.56%), Query Frame = 0 
Query:   57 VTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGVIESVSINRDDRTHRGRGFAFVKFFQESAALNAVVADASTHVIRGTTVSVQ 146
            +T T  S   ++F+  L     S + T+EEL   FS FG I+ VS+ RD RT R +GFAFV F  ES A  A+ A  +  +I G  + V+
Sbjct:   13 ITQTHRSFSSQIFISRL-----SFYTTDEELNRLFSPFGQIKQVSLVRDPRTQRPKGFAFVTFAMESEAQKALEA-MNGRIIGGRLIFVE 96
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BLAST of mRNA_F-serratus_M_contig1379.2752.1 vs. uniprot
Match: A0A2R6PA78_ACTCC (Heterogeneous nuclear ribonucleoprotein like n=2 Tax=Actinidia TaxID=3624 RepID=A0A2R6PA78_ACTCC)

HSP 1 Score: 56.2 bits (134), Expect = 2.420e-5
Identity = 45/129 (34.88%), Postives = 65/129 (50.39%), Query Frame = 0 
Query:   29 RETEPSKEEDKPSNEILDGSDVLQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGVIESVSINRDDRTHRGRGFAFVKFFQESAALNAVVADASTHVIRGTTVSVQWSRGAKDGGDR 157
            +E  P  EE+   N+   G    QQ S   S+ P + +++FVGGL  +     +T E L  YF +FG I  V I  D   +R RGF F+ F  E AAL+  V  +  + +   +V V+W+   KDG  R
Sbjct:   78 KEATPKAEEN--GNQHCQGCLCYQQKS---SSSPLSNKKIFVGGLPPT-----LTAEALKQYFERFGAITDVVIIHDMENNRSRGFGFITFDSEEAALS--VLQSRYYELNKKSVEVKWAE-PKDGNKR 193
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BLAST of mRNA_F-serratus_M_contig1379.2752.1 vs. uniprot
Match: A0A8C4QJM1_EPTBU (Uncharacterized protein n=1 Tax=Eptatretus burgeri TaxID=7764 RepID=A0A8C4QJM1_EPTBU)

HSP 1 Score: 53.5 bits (127), Expect = 5.900e-5
Identity = 28/52 (53.85%), Postives = 36/52 (69.23%), Query Frame = 0 
Query:   68 VFVGGLRESEDSVHITEEELATYFSKFGVIESVSINRDDRTHRGRGFAFVKF 119
            +FVGGL ++       E EL  YFS++G+I+SVSI RD  T R RGFAFV+F
Sbjct:  102 LFVGGLHQN-----TLENELRNYFSRYGIIDSVSIPRDHMTGRHRGFAFVEF 148
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1379.2752.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JCH7_9PHAE4.180e-8169.11RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FM19_ECTSI1.850e-3993.75RNA recognition motif. (A.k.a. RRM, RBD, or RNP do... [more]
D7FM18_ECTSI1.410e-1451.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7J7L5F8_9MAGN7.340e-640.00RRM domain-containing protein n=1 Tax=Kingdonia un... [more]
A0A2R6PA78_ACTCC2.420e-534.88Heterogeneous nuclear ribonucleoprotein like n=2 T... [more]
A0A8C4QJM1_EPTBU5.900e-553.85Uncharacterized protein n=1 Tax=Eptatretus burgeri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 67..146
e-value: 6.1E-17
score: 72.3
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 69..130
e-value: 2.4E-13
score: 49.7
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 66..150
score: 16.705
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 55..207
e-value: 4.6E-22
score: 80.5
IPR037366BOULE/DAZ familyPANTHERPTHR11176BOULE-RELATEDcoord: 59..241
NoneNo IPR availablePANTHERPTHR11176:SF13GENE 17190-RELATEDcoord: 59..241
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 59..180

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1379contigF-serratus_M_contig1379:228294..233542 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1379.2752.1mRNA_F-serratus_M_contig1379.2752.1Fucus serratus malemRNAF-serratus_M_contig1379 228129..234308 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1379.2752.1 ID=prot_F-serratus_M_contig1379.2752.1|Name=mRNA_F-serratus_M_contig1379.2752.1|organism=Fucus serratus male|type=polypeptide|length=294bp
MRSRKSPSHSNGSSYHQQGTCFSLRSPKRETEPSKEEDKPSNEILDGSDV
LQQISNVTSTEPSNEREVFVGGLRESEDSVHITEEELATYFSKFGVIESV
SINRDDRTHRGRGFAFVKFFQESAALNAVVADASTHVIRGTTVSVQWSRG
AKDGGDRPRRRNSSNSGSGSGNGGSPPRNGRSSSSSKSGMFPPKGHRGGG
GGSCGGGCSRGFSPLRNRSQSHVHQAGSGAGGMPFAYCGGGHGHGGDHLN
QPMVCVVVPAQRAAALGLSHLPQHAMGSCASRGSSPVTSTSPL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR037366BOULE/DAZ
IPR035979RBD_domain_sf