prot_F-serratus_M_contig137.2704.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig137.2704.1
Unique Nameprot_F-serratus_M_contig137.2704.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length230
Homology
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BLAST of mRNA_F-serratus_M_contig137.2704.1 vs. uniprot
Match: D8LH74_ECTSI (Mitochondrial import inner membrane translocase subunit TIM17 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH74_ECTSI)

HSP 1 Score: 170 bits (431), Expect = 1.290e-49
Identity = 125/217 (57.60%), Postives = 150/217 (69.12%), Query Frame = 0 
Query:   12 LLVSAHWGCTALVDWTRITHVALRDSNCMEKHHCKQRVRSFDGFISRRPQHGAFGHRIRTSATAVASSPSHLVTGRSASGVLENCIEACVNTFGXXXXXXXXXXXXXXXXXGTFGKVPDVGLLKSVRIKAGQMGGDWGKLTAAFTGFTSLSTVIRGSNDRWDQVVGAAAAGAFLNRAKGPSGMVQGATTYGFFSLIFASQTKQDP-MDVVDVPVNAP 227
            LL+S   GC AL  W+R +  A      ++ HH          + SR P       +   +A AVAS+ SHL TGR+ASGV+EN          XXXXXXXXXXXXXXXXX +FG+VPDVG LKSV+ KA +MGG+WG+L+AAFTGFTS+STVIRG ND+WDQV+GA  AGAFLNRAKGP GM QGA TYG FSLIFA  + QD  +DVVD+PV+AP
Sbjct:   11 LLLSVALGCNALPGWSRNSVGAA-----VQPHHGL-------AWTSRTPTTRTLRRQFPVAA-AVAST-SHLTTGRTASGVMENXXXXXXXXXXXXXXXXXXXXXXXXXXXXSFGRVPDVGWLKSVQTKAVEMGGNWGQLSAAFTGFTSISTVIRGRNDKWDQVLGACGAGAFLNRAKGPQGMAQGAATYGLFSLIFAFPSGQDDELDVVDIPVDAP 213
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig137.2704.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LH74_ECTSI1.290e-4957.60Mitochondrial import inner membrane translocase su... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF02466Tim17coord: 101..205
e-value: 3.8E-10
score: 40.1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..229
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..22
score: 0.779

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig137contigF-serratus_M_contig137:142299..146645 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig137.2704.1mRNA_F-serratus_M_contig137.2704.1Fucus serratus malemRNAF-serratus_M_contig137 141999..146818 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig137.2704.1 ID=prot_F-serratus_M_contig137.2704.1|Name=mRNA_F-serratus_M_contig137.2704.1|organism=Fucus serratus male|type=polypeptide|length=230bp
MSFYRRFQCLLLLVSAHWGCTALVDWTRITHVALRDSNCMEKHHCKQRVR
SFDGFISRRPQHGAFGHRIRTSATAVASSPSHLVTGRSASGVLENCIEAC
VNTFGSFIGGTITGCVIGAFLGGTFGKVPDVGLLKSVRIKAGQMGGDWGK
LTAAFTGFTSLSTVIRGSNDRWDQVVGAAAAGAFLNRAKGPSGMVQGATT
YGFFSLIFASQTKQDPMDVVDVPVNAPTK*
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