prot_F-serratus_M_contig1353.2630.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig1353.2630.1
Unique Name	prot_F-serratus_M_contig1353.2630.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	446

Homology

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BLAST of mRNA_F-serratus_M_contig1353.2630.1 vs. uniprot
Match: D8LC33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC33_ECTSI)

HSP 1 Score: 422 bits (1084), Expect = 3.970e-142
Identity = 244/428 (57.01%), Postives = 282/428 (65.89%), Query Frame = 0

Query:   54 LPDNDLEAERGSHVEDIDCSLVVRPTRTALDLTFFGEISYSFEIVSAHLVRPPKRPT-SKERNCLRRCPHGKACDCGGGAAGRGQRGGE-IEESGRKIVP--VEEEDERRGTA-------------HYAMHMGVNDVATLVLEDNQGITYDFYTFQVVEFDAATGAMALDRWNLFQCGVFRYSCALENVSKVESV---VYMMSAHAFEHLRQTKEFGLRVILSIPVHTGRATSS---SPHVVNAS------AAVAAEAQGGGVGRGSGFAGGALTPTTDLSPHMSRPR---WNAFLGRVS-CERRWGCLSGV---RRPLSRCALGATDSCFLYVDLLFGRKALDNRKLHGPVELVNDLLRRFANEAEVVGGSKGEGANDGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRAFISEKHTVFL 445
            +PDN+LEA +G HVEDIDCSLVVRPTRTALDL FFGE+SYSFEIV+A LVRPPKRP  ++   C  +C  GKAC C   +  R +R  E +E  G+  V   V E D                   H++++MGVNDVATLVLEDNQGITYDFYTFQVVEFDA +GAMALDRWNLF CGVFRYSCALEN+SKVE     VYMMSAHAFEHLRQTKEFGLRVI S+P+   +A ++   SP   NA          +  + G G+   SG  GGA             PR   W     R+  C R   C  G    RRP +R  L +T    +Y++LLFG+K LD+R L  PVE+VN+LL RFAN+ EV  G K EG     CCVCFRRRSRVVTFPCMHMATCPQCSESL+ CPLCRA ISEKHTVFL
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPCNHDSPARSRRLAEDVEPPGKTEVALSVPEGDGEXXXXXXXXXXXXXGVHPHHSLNMGVNDVATLVLEDNQGITYDFYTFQVVEFDADSGAMALDRWNLFHCGVFRYSCALENISKVEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQAATAHPRSPRPNNAGMNFSDPGGSSPSSDGDGISAVSGTVGGAPVARAAARRAAGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVL-STSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFANDVEVDVGEKKEG----NCCVCFRRRSRVVTFPCMHMATCPQCSESLTVCPLCRANISEKHTVFL 423

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BLAST of mRNA_F-serratus_M_contig1353.2630.1 vs. uniprot
Match: A0A6H5JJL0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJL0_9PHAE)

HSP 1 Score: 271 bits (692), Expect = 7.380e-81
Identity = 153/273 (56.04%), Postives = 178/273 (65.20%), Query Frame = 0

Query:  192 QVVEFDAATGAMALDRWNLFQCGVFRYSCALENVSKVESV---VYMMSAHAFEHLRQTKEFGLRVILSIPVHTGRATSSSPHVVNASAAV---------AAEAQGGGVGRGSGFAGGALTPTTDLSPHMSRPR---WNAFLGRVS-CERRWGCLSGV---RRPLSRCALGATDSCFLYVDLLFGRKALDNRKLHGPVELVNDLLRRFANEAEVVGGSKGEGANDGRCCVCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRAFISEKHTVFL 445
            +VVEFDA +GAMALDRWNLF CGVFRYSCALEN+SK+E     VYMMSAHAFEHLRQTKEFGLRVI S+P+   + T++ P     S A          +  + G G+   SG  GGA          +  PR   W     R+  C R   C  G    RRP +R  L +T    +Y++LLFG+K LD+R L  PVE+VN+LL RFAN+ EV GG K EG     CCVCFRRRSRVV FPCMHMATCPQCSESL+ CPLCRA ISEKHTVFL
Sbjct:  354 EVVEFDADSGAMALDRWNLFNCGVFRYSCALENISKIEITEGNVYMMSAHAFEHLRQTKEFGLRVIFSVPLGASQETTAHPRSPRPSNAAMNLSDTDGSSPSSDGDGISGVSGTVGGAPVARGTARRAVGAPRRRRWGVLFRRLLLCGRAGWCFGGRGWWRRPAARGVL-STSGELMYLNLLFGKKELDDRNLRRPVEMVNELLLRFANDVEVDGGEKKEG----NCCVCFRRRSRVVMFPCMHMATCPQCSESLAVCPLCRANISEKHTVFL 621

[Close]

BLAST of mRNA_F-serratus_M_contig1353.2630.1 vs. uniprot
Match: A0A6H5JRV5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV5_9PHAE)

HSP 1 Score: 115 bits (289), Expect = 1.440e-27
Identity = 56/86 (65.12%), Postives = 66/86 (76.74%), Query Frame = 0

Query:   54 LPDNDLEAERGSHVEDIDCSLVVRPTRTALDLTFFGEISYSFEIVSAHLVRPPKRPT-SKERNCLRRCPHGKACDCGGGAAGRGQR 138
            +PDN+LEA +G HVEDIDCSLVVRPTRTALDL FFGE+SYSFEIV+A LVRPPKRP  ++   C  +C  GKAC C   +  R +R
Sbjct:    1 MPDNELEAAKGLHVEDIDCSLVVRPTRTALDLRFFGEVSYSFEIVAARLVRPPKRPPDARSGRCRNKCSPGKACPCNRDSPARSRR 86

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1353.2630.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1353.2630.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LC33_ECTSI	3.970e-142	57.01	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JJL0_9PHAE	7.380e-81	56.04	RING-type domain-containing protein n=1 Tax=Ectoca...	[more]
A0A6H5JRV5_9PHAE	1.440e-27	65.12	Uncharacterized protein (Fragment) n=1 Tax=Ectocar...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 381..445 e-value: 3.5E-13 score: 50.7
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 396..439 e-value: 4.5E-10 score: 39.2
None	No IPR available	PANTHER	PTHR10044	INHIBITOR OF APOPTOSIS	coord: 394..444
None	No IPR available	PANTHER	PTHR10044:SF139	DEATH-ASSOCIATED INHIBITOR OF APOPTOSIS 2	coord: 394..444
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 38..445
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 1..19
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 20..37
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 395..441
None	No IPR available	TMHMM	TMhelix		coord: 20..37
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 399..434 score: 10.203

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1353	contig	F-serratus_M_contig1353:222870..254962 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1353.2630.1	mRNA_F-serratus_M_contig1353.2630.1	Fucus serratus male	mRNA	F-serratus_M_contig1353 222834..256814 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig1353.2630.1 ID=prot_F-serratus_M_contig1353.2630.1|Name=mRNA_F-serratus_M_contig1353.2630.1|organism=Fucus serratus male|type=polypeptide|length=446bp
MEVLQKTKHKVVVRQRRPELLRAVVGCLVVTIIFYLLDARHPKSSLHCAR
HAVLPDNDLEAERGSHVEDIDCSLVVRPTRTALDLTFFGEISYSFEIVSA
HLVRPPKRPTSKERNCLRRCPHGKACDCGGGAAGRGQRGGEIEESGRKIV
PVEEEDERRGTAHYAMHMGVNDVATLVLEDNQGITYDFYTFQVVEFDAAT
GAMALDRWNLFQCGVFRYSCALENVSKVESVVYMMSAHAFEHLRQTKEFG
LRVILSIPVHTGRATSSSPHVVNASAAVAAEAQGGGVGRGSGFAGGALTP
TTDLSPHMSRPRWNAFLGRVSCERRWGCLSGVRRPLSRCALGATDSCFLY
VDLLFGRKALDNRKLHGPVELVNDLLRRFANEAEVVGGSKGEGANDGRCC
VCFRRRSRVVTFPCMHMATCPQCSESLSACPLCRAFISEKHTVFL*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING