prot_F-serratus_M_contig134.2538.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig134.2538.1
Unique Nameprot_F-serratus_M_contig134.2538.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length467
Homology
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: D8LGP7_ECTSI (Cyclin D3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP7_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 4.090e-50
Identity = 184/564 (32.62%), Postives = 236/564 (41.84%), Query Frame = 0
Query:    3 CNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTPVFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPEA----------------------WQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILLSVSHSARAGAPTPDSASPAAVSPGPVATTSHKQVLDTYCRTVA--------------------GVASLHRVLDCVQLLGTSLAESYPAVAAAAGVTAAEVARYADRVGAFKGGVQTLGLSSGTAPKQTALITPTLA---------------ALPAKSRRCCTPTGVEGIMHIETAAAEGR-------------------IGGASVGGGVKPEP--AKLGVRNLTASNG-------KKSGSKHPRPTP------------------------CSTRNRHHGDAFTLSEEDVAFARAVKRSKSGIGASRGVPAAVNGQHHRQPSARKRSSIGSRVASRRPVSDSQPQEQNTRSVAGSSSLQLFSSAPCPLSVGRGNGGKSTGFTSAQ-----LRSRMRSAEALGHCESGSGFGAPAPR 452
            C+P LAQAVA T+LHIAAKFEE  PA LR+L+K+TPVFT +QLL +E+S+LKVL+W+LRPVTVYD +R FC++L +                        Q R+  K   +E+++LR+ AE+IAD +++DV FV+F+PST+A +A+                 AS        V  TSH  VLD   +  A                    GVASL RVL+CVQLLG+SLAE YPAVA+AA   A  VARYA             GL     P+ T+ + P                   +  K RRC TPTGVEGIMHIE     G                    I GAS G G       A +G   L            ++   +H RPTP                             R    +F  S +D+AF+RA K+ ++                                                                 P +     GG   G  +A+        R RSAEALGHCESGSGFGAPA R
Sbjct:  107 CSPTLAQAVAATALHIAAKFEETNPASLRQLLKYTPVFTPEQLLVMEMSLLKVLNWDLRPVTVYDFVRAFCALLVQGEASSHAAXXXXXXXXXXXXXXXXQAREEKK---EELKRLRVWAEDIADLASFDVRFVDFLPSTLATAALXXXXXXXXXXXXXXXXXAS--------VRPTSHADVLDACWKGPAEADAASDGAAAAAVDGCGGTGVASLRRVLECVQLLGSSLAERYPAVASAARSAAEGVARYA-------------GLP---VPRGTSSVPPRXXXXXXXXXXXXXXXXXVVAVKGRRCTTPTGVEGIMHIEMDTLRGDEAGLQQQQHQPSEHKMPGGIDGASAGCGXXXXXXXAPVGREGLAPGGSVHVKLEHEQPQRRHRRPTPIIXXXXXXXXXXXXXXXXXXXXXXARAGRRGSSSSFACSYDDIAFSRATKQKRAXX----------------------------------------XXXXXXXXXXXXXXXXXXXXXXXPRATAVAAGGDVNGAVAAESAVMSCNIRKRSAEALGHCESGSGFGAPAAR 603          
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Match: A0A6H5L1G7_9PHAE (CYCLIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1G7_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 2.140e-36
Identity = 166/541 (30.68%), Postives = 217/541 (40.11%), Query Frame = 0
Query:    3 CNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTPVFTAKQLLTIELSILKVLDWELRPVTVYDCIRGFCSVLPE----------------------AWQKRKNNKRREQEVEQLRILAEEIADFSAYDVSFVEFVPSTMAISAILLSVSHSARAGAPTPDSASPAAVSPGPVATTSHKQVLDTYCRTVA-----------------GVASLHRVLDCVQLLGTSLAESYPAVAAAAGVTAAEVARYADRVGAFKGGVQTLGLSSGTAPKQTALITPTLAALPAKSRRCCTPTGVEGIMHIETAAAEGR-------------------------------------IGGASVGGG----VKPE----------PAKLGVRNLTASNGKKSGS-KHPRPTPCSTRNRHHGDAFTLSEEDVAFARAVKRSKSGIGASRGVPAAVNGQHHRQPSARKRSSIGSRVASRRPVSDSQPQEQNTRSVAGSSSLQLFSSAPCPLSVGRGNGGKSTGFTSAQLRSRMRSAEALGHCESGSGFGAPAPR 452
            C+P LAQAVA T+LH AAKFEE +PA L                        VL+W+LRPVTVYD +R FC++L +                      + Q R+  K   +E+E+L + AE+IAD +++DV FV F+PST+A +A+                           V  TSH +VLD   +  A                 GVASL RVL+CV LLG+SLAE YPAVA+AA   A  VARYA        G   +      A ++ A    T   +  K RRC TPTGVEGI+HIE     G                                      +GG  +G G    VK E          P  +      A+N   +G  +H   TP     R    +F  S +DVAF+RA K +++   A                   + +++                       AGS                  NG  + G +      R RSAEALGHCESGSGFGAPA R
Sbjct:  203 CSPTLAQAVAATALHTAAKFEETKPASL------------------------VLNWDLRPVTVYDFVRAFCALLVQGEGSSHAAAASTSGVGGASVSVSLQAREEKK---EELERLGVWAEDIADLASFDVRFVNFLPSTLATAALXXXXXXXXXXXXXXXXX--------XXVPPTSHAEVLDVCWKGPAEADAASDGAAIDGCGGTGVASLRRVLECVLLLGSSLAERYPAVASAARSAAEGVARYAGFP--VPSGTSNVPPRREPAGRKRAAQAATPPVVAVKGRRCATPTGVEGIVHIEMDTLRGGEAGLQQQQHQPSEHKPRGSGDGALAXXXXXXXXSSAPVGGEGLGPGGSVHVKQEHQLPQGRHRRPTPIITAAAGAANNSAAGQPQHQDHTPACAEMRGSSSSFAYSGDDVAFSRATKHTRAAATAXXXXXXXXXXXXXXXXXXPRATAVD----------------------AGSDM----------------NGAVAAGSSLMSCNIRKRSAEALGHCESGSGFGAPATR 668          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig134.2538.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGP7_ECTSI4.090e-5032.62Cyclin D3 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5L1G7_9PHAE2.140e-3630.68CYCLIN domain-containing protein n=1 Tax=Ectocarpu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004367Cyclin, C-terminal domainPFAMPF02984Cyclin_Ccoord: 63..185
e-value: 2.3E-6
score: 27.7
IPR039361CyclinPIRSFPIRSF001771Cyclin_A_B_D_Ecoord: 286..408
e-value: 260.0
score: -1.6
coord: 7..133
e-value: 1.6E-8
score: 32.1
IPR039361CyclinPANTHERPTHR10177CYCLINEcoord: 9..154
NoneNo IPR availableGENE3D1.10.472.10coord: 62..136
e-value: 1.4E-20
score: 75.6
NoneNo IPR availableGENE3D1.10.472.10coord: 8..61
e-value: 1.4E-20
score: 75.6
IPR006671Cyclin, N-terminalPFAMPF00134Cyclin_Ncoord: 8..61
e-value: 1.7E-10
score: 40.8
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 7..61

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig134contigF-serratus_M_contig134:633466..636235 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig134.2538.1mRNA_F-serratus_M_contig134.2538.1Fucus serratus malemRNAF-serratus_M_contig134 633382..636437 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig134.2538.1 ID=prot_F-serratus_M_contig134.2538.1|Name=mRNA_F-serratus_M_contig134.2538.1|organism=Fucus serratus male|type=polypeptide|length=467bp
MACNPALAQAVAVTSLHIAAKFEEPRPAPLRELIKFTPVFTAKQLLTIEL
SILKVLDWELRPVTVYDCIRGFCSVLPEAWQKRKNNKRREQEVEQLRILA
EEIADFSAYDVSFVEFVPSTMAISAILLSVSHSARAGAPTPDSASPAAVS
PGPVATTSHKQVLDTYCRTVAGVASLHRVLDCVQLLGTSLAESYPAVAAA
AGVTAAEVARYADRVGAFKGGVQTLGLSSGTAPKQTALITPTLAALPAKS
RRCCTPTGVEGIMHIETAAAEGRIGGASVGGGVKPEPAKLGVRNLTASNG
KKSGSKHPRPTPCSTRNRHHGDAFTLSEEDVAFARAVKRSKSGIGASRGV
PAAVNGQHHRQPSARKRSSIGSRVASRRPVSDSQPQEQNTRSVAGSSSLQ
LFSSAPCPLSVGRGNGGKSTGFTSAQLRSRMRSAEALGHCESGSGFGAPA
PRITKADTAPPAAPAR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004367Cyclin_C-dom
IPR039361Cyclin
IPR006671Cyclin_N
IPR036915Cyclin-like_sf