prot_F-serratus_M_contig1335.2492.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1335.2492.1
Unique Nameprot_F-serratus_M_contig1335.2492.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length58
Homology
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: UPI0015896A5A (secreted RxLR effector protein 161-like n=1 Tax=Populus alba TaxID=43335 RepID=UPI0015896A5A)

HSP 1 Score: 57.4 bits (137), Expect = 1.660e-8
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0
Query:    1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHAKFI 53
            GR+ HIDVK+H +RD +  + + ++F RSEDQ AD+ TKPL    F+K  K +
Sbjct:  144 GRSKHIDVKYHFLRDLAKDEVINLIFCRSEDQMADIFTKPLKTSLFHKLRKLL 196          
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A2I0AK16_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Apostasia shenzhenica TaxID=1088818 RepID=A0A2I0AK16_9ASPA)

HSP 1 Score: 55.1 bits (131), Expect = 1.190e-7
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYK 48
            GR+ HIDVK++ +RD S+   +++V+ RSEDQ AD+ TKPL + TF K
Sbjct:  134 GRSKHIDVKYYFLRDLSNNGTIKLVYCRSEDQVADIQTKPLKLVTFAK 181          
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: UPI0019410DF6 (Ty1/Copia family ribonuclease HI n=1 Tax=Serratia marcescens TaxID=615 RepID=UPI0019410DF6)

HSP 1 Score: 52.8 bits (125), Expect = 1.270e-7
Identity = 27/56 (48.21%), Postives = 36/56 (64.29%), Query Frame = 0
Query:    2 RTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHAKFILNVV 57
            RT HIDV+HH +RD      + +  V +EDQ ADL TKPLD + F+K  K  LN++
Sbjct:   25 RTKHIDVRHHFIRDHQQKGDIAIESVGTEDQLADLFTKPLDEKRFHK-LKNELNIL 79          
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A2K3PKY8_TRIPR (Uncharacterized protein n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3PKY8_TRIPR)

HSP 1 Score: 55.5 bits (132), Expect = 1.570e-7
Identity = 25/48 (52.08%), Postives = 35/48 (72.92%), Query Frame = 0
Query:    1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYK 48
            GR+ HIDV+ H +RD +  + + +V  RSEDQ ADL TKPL +++FYK
Sbjct:  238 GRSKHIDVRFHFLRDLTKDESIELVHCRSEDQLADLLTKPLKLESFYK 285          
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: UPI001F1DB15C (Ty1/Copia family ribonuclease HI n=1 Tax=Salmonella sp. zj-f54 TaxID=2582617 RepID=UPI001F1DB15C)

HSP 1 Score: 52.4 bits (124), Expect = 1.840e-7
Identity = 22/45 (48.89%), Postives = 32/45 (71.11%), Query Frame = 0
Query:    2 RTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTF 46
            RT HID++HH +RD    + + V +V +E+Q AD+ TKPLD +TF
Sbjct:   26 RTKHIDIRHHFLRDHQQKRDIEVFYVSTENQLADIFTKPLDEKTF 70          
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A5B7B1Y6_DAVIN (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Davidia involucrata TaxID=16924 RepID=A0A5B7B1Y6_DAVIN)

HSP 1 Score: 55.1 bits (131), Expect = 2.330e-7
Identity = 25/53 (47.17%), Postives = 36/53 (67.92%), Query Frame = 0
Query:    1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHAKFI 53
            GR+ HIDVK+H +RD ++   + +++ RSEDQ AD+ TKPL   TF K  K +
Sbjct:  263 GRSKHIDVKYHFLRDLTNDGVINLIYCRSEDQIADILTKPLKFPTFQKPRKLL 315          
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A6P5SZW2_PRUAV (uncharacterized protein LOC110761517 n=1 Tax=Prunus avium TaxID=42229 RepID=A0A6P5SZW2_PRUAV)

HSP 1 Score: 54.7 bits (130), Expect = 3.120e-7
Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 0
Query:    1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYK 48
            GR+ HIDVK++ +RD S+   +++V+ RSEDQ AD+ TKPL + TF +
Sbjct:  244 GRSKHIDVKYYFLRDLSNDGTIKLVYCRSEDQVADIQTKPLKLATFVR 291          
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A2I0WY96_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WY96_9ASPA)

HSP 1 Score: 52.4 bits (124), Expect = 4.540e-7
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 0
Query:    2 RTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHAKFILNVV 57
            R+ HIDV+ H +RD    + V+V +V+S+DQ AD+ TKPL  + F K  K +L VV
Sbjct:   74 RSKHIDVRFHYIRDQIKGKEVQVEYVKSQDQIADIFTKPLAAEQFIK-LKILLGVV 128          
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A5C7IDG6_9ROSI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7IDG6_9ROSI)

HSP 1 Score: 54.3 bits (129), Expect = 4.630e-7
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 0
Query:    1 GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHA 50
            GR+ HIDV++H +RD      + ++F RSEDQ AD+ TKPL +  F KH+
Sbjct:  445 GRSKHIDVRYHFLRDLCKDGTIDLIFCRSEDQVADILTKPLKLPVFVKHS 494          
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Match: A0A182H646_AEDAL (Uncharacterized protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H646_AEDAL)

HSP 1 Score: 53.9 bits (128), Expect = 5.630e-7
Identity = 25/41 (60.98%), Postives = 30/41 (73.17%), Query Frame = 0
Query:    2 RTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLD 42
            R+ HIDVKHH VRD      VR+ +VR+EDQ ADL TKP+D
Sbjct:  234 RSKHIDVKHHFVRDHISNGNVRIEYVRTEDQLADLFTKPMD 274          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1335.2492.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI0015896A5A1.660e-847.17secreted RxLR effector protein 161-like n=1 Tax=Po... [more]
A0A2I0AK16_9ASPA1.190e-752.08Retrovirus-related Pol polyprotein from transposon... [more]
UPI0019410DF61.270e-748.21Ty1/Copia family ribonuclease HI n=1 Tax=Serratia ... [more]
A0A2K3PKY8_TRIPR1.570e-752.08Uncharacterized protein n=1 Tax=Trifolium pratense... [more]
UPI001F1DB15C1.840e-748.89Ty1/Copia family ribonuclease HI n=1 Tax=Salmonell... [more]
A0A5B7B1Y6_DAVIN2.330e-747.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6P5SZW2_PRUAV3.120e-750.00uncharacterized protein LOC110761517 n=1 Tax=Prunu... [more]
A0A2I0WY96_9ASPA4.540e-746.43Retrovirus-related Pol polyprotein from transposon... [more]
A0A5C7IDG6_9ROSI4.630e-748.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182H646_AEDAL5.630e-760.98Uncharacterized protein n=1 Tax=Aedes albopictus T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1335contigF-serratus_M_contig1335:235861..236034 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1335.2492.1mRNA_F-serratus_M_contig1335.2492.1Fucus serratus malemRNAF-serratus_M_contig1335 235861..236034 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1335.2492.1 ID=prot_F-serratus_M_contig1335.2492.1|Name=mRNA_F-serratus_M_contig1335.2492.1|organism=Fucus serratus male|type=polypeptide|length=58bp
GRTNHIDVKHHLVRDASDAQRVRVVFVRSEDQHADLHTKPLDVQTFYKHA
KFILNVV*
back to top