prot_F-serratus_M_contig132.2392.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig132.2392.1
Unique Nameprot_F-serratus_M_contig132.2392.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length198
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig132.2392.1 vs. uniprot
Match: D8LEX7_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEX7_ECTSI)

HSP 1 Score: 147 bits (370), Expect = 2.980e-38
Identity = 88/157 (56.05%), Postives = 108/157 (68.79%), Query Frame = 0 
Query:   48 VAIVVGCGVFTLVILCIVRKIMDLCLMRFDPTGSISYSQEEGLPKATIERLPQTRYRKPPPKVQVKAAKIGEKHDGPASIG-----AAAVTGGDVSSVSVTEADEERGSTIIVPVVAA-AGAEESAADG-RDSTEDMCAICLIEYEHGDDLRIIPGC 197
            ++IVVGCGV TL++LC+VRK+MDLCL+R DPTGS+ YSQEEGL K +IERLPQTRY++P   V   A K G+K   PAS G       A   G+   V+ ++     GS+   P  A  AGAE    +G RDSTEDMCAICL+EYE GD+LRIIPGC
Sbjct:   63 ISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPQTRYKRP---VSGTAQKKGDKKT-PASDGKKPDDTEAAAAGEEGGVTGSDLHGPPGSSTAAPKTAVVAGAEGGEGEGARDSTEDMCAICLVEYETGDELRIIPGC 215
[Close]
BLAST of mRNA_F-serratus_M_contig132.2392.1 vs. uniprot
Match: A0A6H5KYP0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYP0_9PHAE)

HSP 1 Score: 141 bits (355), Expect = 1.970e-35
Identity = 82/155 (52.90%), Postives = 102/155 (65.81%), Query Frame = 0 
Query:   48 VAIVVGCGVFTLVILCIVRKIMDLCLMRFDPTGSISYSQEEGLPKATIERLPQTRYRKPPP-KVQVKAAKIGEKHDGPASIGAAAVTGGDVSSVSVTEADE----ERGSTIIVPVVAAAGAEESAADGRDSTEDMCAICLIEYEHGDDLRIIPGC 197
            ++IVVGCGV TL++LC+VRK+MDLCL+R DPTGS+ YSQEEGL K +IERLP+TRY++P     Q K  K     DG    G  A   G+   V+ ++         G+     V+AA G E   A  RDSTEDMCAICL+EYE GD+LRIIPGC
Sbjct:  256 ISIVVGCGVLTLILLCVVRKVMDLCLLRNDPTGSLRYSQEEGLTKRSIERLPETRYKRPVSGSAQKKGGKKTPAADGKKPDGTEAAAAGEEGGVTGSDLHGAPAGRTGAPQTAVVLAAEGGEREGA--RDSTEDMCAICLVEYETGDELRIIPGC 408
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig132.2392.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEX7_ECTSI2.980e-3856.05RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KYP0_9PHAE1.970e-3552.90RING-type domain-containing protein n=1 Tax=Ectoca... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 66..198
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..65
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..45
NoneNo IPR availableTMHMMTMhelixcoord: 46..65

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig132contigF-serratus_M_contig132:465442..468562 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig132.2392.1mRNA_F-serratus_M_contig132.2392.1Fucus serratus malemRNAF-serratus_M_contig132 465442..468562 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig132.2392.1 ID=prot_F-serratus_M_contig132.2392.1|Name=mRNA_F-serratus_M_contig132.2392.1|organism=Fucus serratus male|type=polypeptide|length=198bp
PGPADLPVGGFDCTELKKGEKDPGEGANIVDDSMAGEGNTSMNLDVIVAI
VVGCGVFTLVILCIVRKIMDLCLMRFDPTGSISYSQEEGLPKATIERLPQ
TRYRKPPPKVQVKAAKIGEKHDGPASIGAAAVTGGDVSSVSVTEADEERG
STIIVPVVAAAGAEESAADGRDSTEDMCAICLIEYEHGDDLRIIPGCK
back to top