prot_F-serratus_M_contig1317.2357.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1317.2357.1
Unique Nameprot_F-serratus_M_contig1317.2357.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length651
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1317.2357.1 vs. uniprot
Match: D7G7L5_ECTSI (RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L5_ECTSI)

HSP 1 Score: 350 bits (899), Expect = 1.460e-107
Identity = 292/563 (51.87%), Postives = 332/563 (58.97%), Query Frame = 0 
Query:   27 RRSDWECSKCRALNFARRDHCFGCGAPIGRGFHSSIPTNVLRLSGLRRSTAAEEAVLALKPFAPVKDARLAVHPTTGVSLRACYAEFASVELAQHTLETVRSTGSGDGLIVEGIKASLSYAAAGAPPASXXXXXXXXXXXAGGKGKPSGRPPAVSASAETALKAFQGRQTAVRLAKLEGTEAGEADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAF--------------------AGGTSEVGVRVGAVSLGGLVGNEGNGIGAEGAPPEVVNAALEKKLNPPEWPLSFEEDGAAYLFDGPSGYFYESSTXXXYDPKSKLYCKDMRWHRHVPDQDPAFVPVEQEGTTSHQYPVEQNASVAATTPAEAASSDAQAQAPAATNGSGVKEAAAVAAVSAAAVTPATVKRSIGIGG-----------------KKQRIAFGFKGIKLAKPGVGSGTGGAVG----SEEDGGGEPKGAEAV---------GGMGGPGALAKKRRLEDLSKWNARKLEAAAKK---EEDKKERDPEPLHIAPRRQ--PQVP----TYDPPAPLLPPL 530
            +R+DWECSKC  LNFARRD CFGCGA +G+G+ ++IPTNVLR+SGLRRST +E+ VLALKPFAPVKDA LAVHPTT  SLRAC+ EF SVE AQHTL+T    G G GL +EG  ASLSYAA+GA P  XXXXXXXXXXX             VSAS+ TALKAFQGRQ A RLAKLEG EA    XXXXXXXXXXXXXXXXXXXXXXXXXXXXX                       GG +       A+++  L    G   G+EGA PE V AAL+KKLNPP+WP  FEE GAAYLFDGPSGYFYES+T   YDP+SKLYCK M W+ H P QDPAF PV Q+G T  +  +   AS                         GV    A AA                                       R+AFGFKG KLAK   G G  GA G    ++ D  G+  G E           GG+G  GALAKKR+LED+SKWNARKLEA   +     +  +   +PLHIAPRRQ  P  P    +YDPPAPLLPPL
Sbjct:   74 KRADWECSKCSTLNFARRDRCFGCGAAMGKGYRTTIPTNVLRVSGLRRSTTSEQVVLALKPFAPVKDAHLAVHPTTNASLRACHVEFQSVEHAQHTLDTASVEGDG-GLTIEGEPASLSYAASGAAPXXXXXXXXXXXXXXXXXXXXXRIVAPVSASSVTALKAFQGRQNAARLAKLEGGEAATGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGDAXXXXXXXAMAVVTL----GGAAGSEGASPEAVCAALQKKLNPPDWPPPFEEAGAAYLFDGPSGYFYESTTGVYYDPRSKLYCKGMVWYSHTPGQDPAFNPVSQQGGTDARSSLANGAS------------------------EGVSVGDATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKKSSSRLAFGFKGAKLAKAAAGGGGVGASGVLGGADSDSSGDDSGGEVAAGVGRGTVGGGVGVGGALAKKRQLEDVSKWNARKLEAQQGEGGGASNGTKAAAQPLHIAPRRQQQPSAPQATISYDPPAPLLPPL 607
[Close]
BLAST of mRNA_F-serratus_M_contig1317.2357.1 vs. uniprot
Match: A0A7C9AUR1_OPUST (Uncharacterized protein n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AUR1_OPUST)

HSP 1 Score: 58.9 bits (141), Expect = 2.490e-5
Identity = 41/118 (34.75%), Postives = 50/118 (42.37%), Query Frame = 0 
Query:   29 SDWECSKCRALNFARRDHCFGCG-----------------APIGRGFHSSIPTNVLRLSGLRRSTAAEEAVLALKPFAPVKDARLAVHPTTGVSLRACYAEFASVELAQHTLETVRST 129
            SDW C+ C  +NFARR  CF C                  AP+GR    + PT+VL + GL  +   E         AP+KD RL     T VS    +  F SVE A   LE    T
Sbjct:  360 SDWMCTICGCVNFARRVSCFQCNESRTDDAPPADLSSSNPAPLGRKGAEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGT 477
[Close]
BLAST of mRNA_F-serratus_M_contig1317.2357.1 vs. uniprot
Match: A0A7C9AWL4_OPUST (Uncharacterized protein n=3 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9AWL4_OPUST)

HSP 1 Score: 58.9 bits (141), Expect = 2.950e-5
Identity = 41/118 (34.75%), Postives = 50/118 (42.37%), Query Frame = 0 
Query:   29 SDWECSKCRALNFARRDHCFGCG-----------------APIGRGFHSSIPTNVLRLSGLRRSTAAEEAVLALKPFAPVKDARLAVHPTTGVSLRACYAEFASVELAQHTLETVRST 129
            SDW C+ C  +NFARR  CF C                  AP+GR    + PT+VL + GL  +   E         AP+KD RL     T VS    +  F SVE A   LE    T
Sbjct:  360 SDWMCTICGCVNFARRVSCFQCNESRTDDAPPADLSSSNPAPLGRKGAEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFYSVEDATKALEATNGT 477
[Close]
BLAST of mRNA_F-serratus_M_contig1317.2357.1 vs. uniprot
Match: UPI00192A0F0A (LOW QUALITY PROTEIN: SUPPRESSOR OF ABI3-5 n=1 Tax=Dioscorea cayennensis subsp. rotundata TaxID=55577 RepID=UPI00192A0F0A)

HSP 1 Score: 58.9 bits (141), Expect = 3.010e-5
Identity = 40/118 (33.90%), Postives = 49/118 (41.53%), Query Frame = 0 
Query:   29 SDWECSKCRALNFARRDHCFGCG-----------------APIGRGFHSSIPTNVLRLSGLRRSTAAEEAVLALKPFAPVKDARLAVHPTTGVSLRACYAEFASVELAQHTLETVRST 129
            SDW C+ C  +NFARR  CF C                   P+GR    + PT+VL + GL  +   E         AP+KD RL     T VS    +  F SVE A   LE    T
Sbjct:  369 SDWMCTMCGCVNFARRTSCFQCNEGRTEDAPLADVASSNPTPLGRKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFLHFHSVEDATKALEATNGT 486
[Close]
BLAST of mRNA_F-serratus_M_contig1317.2357.1 vs. uniprot
Match: UPI001C4F197B (SUPPRESSOR OF ABI3-5-like isoform X3 n=3 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C4F197B)

HSP 1 Score: 58.9 bits (141), Expect = 3.040e-5
Identity = 40/118 (33.90%), Postives = 49/118 (41.53%), Query Frame = 0 
Query:   29 SDWECSKCRALNFARRDHCFGCGAP-----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEAVLALKPFAPVKDARLAVHPTTGVSLRACYAEFASVELAQHTLETVRST 129
            SDW C+ C  +NFARR  CF C  P                 +GR    + PT+VL + GL  +   E         AP+KD RL     T VS    +  F SVE A   LE    T
Sbjct:  387 SDWMCTICNCVNFARRTSCFQCNEPRTDDAAAADVASSNPTQLGRKGSEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEATNGT 504
[Close]
BLAST of mRNA_F-serratus_M_contig1317.2357.1 vs. uniprot
Match: M4CS65_BRARP (Uncharacterized protein n=10 Tax=Brassiceae TaxID=981071 RepID=M4CS65_BRARP)

HSP 1 Score: 58.5 bits (140), Expect = 3.890e-5
Identity = 41/117 (35.04%), Postives = 47/117 (40.17%), Query Frame = 0 
Query:   29 SDWECSKCRALNFARRDHCFGCGAP----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEAVLALKPFAPVKDARLAVHPTTGVSLRACYAEFASVELAQHTLETVRST 129
            SDW C+ C  +NFARR  CF C  P                 GR    S PT+VL + GL      E         AP+KD RL     T VS    +  F SVE A   LE    T
Sbjct:  366 SDWICTICGCINFARRTSCFQCNEPKTDDSPSVDVGLSNSTAGRRSSESGPTHVLVVRGLDEDADEEMIRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFFSVEDATKALEATNGT 482
[Close]
BLAST of mRNA_F-serratus_M_contig1317.2357.1 vs. uniprot
Match: A0A816PE80_BRANA ((rape) hypothetical protein n=3 Tax=Brassica TaxID=3705 RepID=A0A816PE80_BRANA)

HSP 1 Score: 58.5 bits (140), Expect = 4.300e-5
Identity = 41/117 (35.04%), Postives = 47/117 (40.17%), Query Frame = 0 
Query:   29 SDWECSKCRALNFARRDHCFGCGAP----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEAVLALKPFAPVKDARLAVHPTTGVSLRACYAEFASVELAQHTLETVRST 129
            SDW C+ C  +NFARR  CF C  P                 GR    S PT+VL + GL      E         AP+KD RL     T VS    +  F SVE A   LE    T
Sbjct:  894 SDWICTICGCINFARRTSCFQCNEPKTDDSPSVDVGLSNSTAGRRSSESGPTHVLVVRGLDEDADEEMIRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFFSVEDATKALEATNGT 1010
[Close]
BLAST of mRNA_F-serratus_M_contig1317.2357.1 vs. uniprot
Match: UPI001CC45291 (SUPPRESSOR OF ABI3-5 isoform X3 n=1 Tax=Manihot esculenta TaxID=3983 RepID=UPI001CC45291)

HSP 1 Score: 58.2 bits (139), Expect = 5.090e-5
Identity = 40/118 (33.90%), Postives = 49/118 (41.53%), Query Frame = 0 
Query:   29 SDWECSKCRALNFARRDHCFGCGAP-----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEAVLALKPFAPVKDARLAVHPTTGVSLRACYAEFASVELAQHTLETVRST 129
            SDW C+ C  +NFARR  CF C  P                 +GR    + PT+VL + GL  +   E         AP+KD RL     T VS    +  F SVE A   LE    T
Sbjct:  394 SDWMCTICGCVNFARRTSCFQCNEPRTEDAPAADIALSNPASLGRKGFEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEATNGT 511
[Close]
BLAST of mRNA_F-serratus_M_contig1317.2357.1 vs. uniprot
Match: A0A251LG50_MANES (Uncharacterized protein n=7 Tax=Crotonoideae TaxID=235631 RepID=A0A251LG50_MANES)

HSP 1 Score: 58.2 bits (139), Expect = 5.220e-5
Identity = 40/118 (33.90%), Postives = 49/118 (41.53%), Query Frame = 0 
Query:   29 SDWECSKCRALNFARRDHCFGCGAP-----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEAVLALKPFAPVKDARLAVHPTTGVSLRACYAEFASVELAQHTLETVRST 129
            SDW C+ C  +NFARR  CF C  P                 +GR    + PT+VL + GL  +   E         AP+KD RL     T VS    +  F SVE A   LE    T
Sbjct:  394 SDWMCTICGCVNFARRTSCFQCNEPRTEDAPAADIALSNPASLGRKGFEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEATNGT 511
[Close]
BLAST of mRNA_F-serratus_M_contig1317.2357.1 vs. uniprot
Match: A0A6A6MR57_HEVBR (Uncharacterized protein n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=A0A6A6MR57_HEVBR)

HSP 1 Score: 58.2 bits (139), Expect = 5.270e-5
Identity = 40/118 (33.90%), Postives = 49/118 (41.53%), Query Frame = 0 
Query:   29 SDWECSKCRALNFARRDHCFGCGAP-----------------IGRGFHSSIPTNVLRLSGLRRSTAAEEAVLALKPFAPVKDARLAVHPTTGVSLRACYAEFASVELAQHTLETVRST 129
            SDW C+ C  +NFARR  CF C  P                 +GR    + PT+VL + GL  +   E         AP+KD RL     T VS    +  F SVE A   LE    T
Sbjct:  462 SDWMCTICGCVNFARRTSCFQCNEPRTEDAPPADVALSNPTSLGRKGFEAGPTHVLVVRGLDENADEEMLRYEFSKHAPIKDLRLVRDKFTHVSRGFAFVHFHSVEDATKALEATNGT 579
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1317.2357.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
D7G7L5_ECTSI1.460e-10751.87RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ecto... [more]
A0A7C9AUR1_OPUST2.490e-534.75Uncharacterized protein n=1 Tax=Opuntia streptacan... [more]
A0A7C9AWL4_OPUST2.950e-534.75Uncharacterized protein n=3 Tax=Opuntia streptacan... [more]
UPI00192A0F0A3.010e-533.90LOW QUALITY PROTEIN: SUPPRESSOR OF ABI3-5 n=1 Tax=... [more]
UPI001C4F197B3.040e-533.90SUPPRESSOR OF ABI3-5-like isoform X3 n=3 Tax=Macad... [more]
M4CS65_BRARP3.890e-535.04Uncharacterized protein n=10 Tax=Brassiceae TaxID=... [more]
A0A816PE80_BRANA4.300e-535.04(rape) hypothetical protein n=3 Tax=Brassica TaxID... [more]
UPI001CC452915.090e-533.90SUPPRESSOR OF ABI3-5 isoform X3 n=1 Tax=Manihot es... [more]
A0A251LG50_MANES5.220e-533.90Uncharacterized protein n=7 Tax=Crotonoideae TaxID... [more]
A0A6A6MR57_HEVBR5.270e-533.90Uncharacterized protein n=1 Tax=Hevea brasiliensis... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 29..53
e-value: 4.4E-7
score: 39.5
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 30..53
e-value: 3.7E-6
score: 26.1
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 31..50
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 27..56
score: 9.337
NoneNo IPR availableGENE3D4.10.1060.10coord: 20..56
e-value: 8.6E-9
score: 36.5
NoneNo IPR availablePANTHERPTHR13948RNA-BINDING PROTEINcoord: 22..642
IPR041591OCRE domainPFAMPF17780OCREcoord: 302..331
e-value: 1.7E-7
score: 31.2
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 610..640
score: 8.995
IPR036443Zinc finger, RanBP2-type superfamilySUPERFAMILY90209Ran binding protein zinc finger-likecoord: 23..53
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 61..147

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1317contigF-serratus_M_contig1317:161617..167257 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1317.2357.1mRNA_F-serratus_M_contig1317.2357.1Fucus serratus malemRNAF-serratus_M_contig1317 159732..167833 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1317.2357.1 ID=prot_F-serratus_M_contig1317.2357.1|Name=mRNA_F-serratus_M_contig1317.2357.1|organism=Fucus serratus male|type=polypeptide|length=651bp
MPDWVPDVLLNADRVASAPQAPHGRPRRSDWECSKCRALNFARRDHCFGC
GAPIGRGFHSSIPTNVLRLSGLRRSTAAEEAVLALKPFAPVKDARLAVHP
TTGVSLRACYAEFASVELAQHTLETVRSTGSGDGLIVEGIKASLSYAAAG
APPASAAAAVAAMAVGAGGKGKPSGRPPAVSASAETALKAFQGRQTAVRL
AKLEGTEAGEADASAAASAAAAAARTRVDTGSGAGTGSLAIAFAGGTSEV
GVRVGAVSLGGLVGNEGNGIGAEGAPPEVVNAALEKKLNPPEWPLSFEED
GAAYLFDGPSGYFYESSTGVYYDPKSKLYCKDMRWHRHVPDQDPAFVPVE
QEGTTSHQYPVEQNASVAATTPAEAASSDAQAQAPAATNGSGVKEAAAVA
AVSAAAVTPATVKRSIGIGGKKQRIAFGFKGIKLAKPGVGSGTGGAVGSE
EDGGGEPKGAEAVGGMGGPGALAKKRRLEDLSKWNARKLEAAAKKEEDKK
ERDPEPLHIAPRRQPQVPTYDPPAPLLPPLPGEDEAPNPEEVELPQAESS
SSVGDWVGGFGVGGVRSGGIKGRGTMGLGAVAAGRGIAVAPRPVSVGGGR
DGDGAAPVVVACLLCRRSFASTEMLRKHEKKSKLHKDNLAAAAAGKGALV
*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR041591OCRE
IPR013087Znf_C2H2_type
IPR036443Znf_RanBP2_sf
IPR035979RBD_domain_sf