prot_F-serratus_M_contig1313.2345.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig1313.2345.1
Unique Name	prot_F-serratus_M_contig1313.2345.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	102

Homology

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BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KRT7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRT7_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.800e-20
Identity = 42/98 (42.86%), Postives = 62/98 (63.27%), Query Frame = 0

Query:    4 FSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAFFA 101
            F M+D+G+V   L I + RD+E GT+ +SQE YV A+LERFG+ +  PVSTP  G E+       + L     K YQ++ GS+++L   TRFD+++ A
Sbjct:   81 FEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNALLERFGMQEANPVSTPGYGAEIYTDQPQDQILGPTDMKIYQSMTGSILYLAQCTRFDLSYAA 178

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BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KAK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAK0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.090e-19
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0

Query:    4 FSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAFFA 101
            F M+D+G+V   L I + RD+E GT+ +SQE YV  +LERFG+ +  PVSTP  G E+       + L     K YQ++ GS+++L   TRFD+++ A
Sbjct:   81 FEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKNYQSMTGSILYLAQCTRFDLSYAA 178

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BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 1.950e-19
Identity = 46/97 (47.42%), Postives = 68/97 (70.10%), Query Frame = 0

Query:    4 FSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELI-VKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAF 99
            F M+DLG+ S  L ++I RD EA T+ +SQE Y ++ILERFG+S  KP STP  G E+  ++PE +  LDEK T++YQ ++GSL+++    R+DI +
Sbjct:  364 FKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMY 459

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BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 2.740e-19
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 0

Query:    4 FSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELI-VKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAF 99
            F M+DLG+ S  L + I RD EA T+ +SQE Y ++ILERFG+S  KP STP  G E+  ++PE +  LDEK T++YQ ++GSL+++    R+DI +
Sbjct:  143 FKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMY 238

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BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KL37_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL37_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.700e-19
Identity = 43/96 (44.79%), Postives = 61/96 (63.54%), Query Frame = 0

Query:    4 FSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAF 99
            F M+D+G+V   L + I RD   GT+ +SQE Y ++ILERFG+S+CKP STP  G EL  K      L E+ T+ YQ ++G LI++    R+DI +
Sbjct:  680 FKMTDMGEVKLVLGMEIKRDRNQGTLTISQEAYSKSILERFGMSECKPTSTPGYGSELSNKQPEDTLLSEEETRRYQGIVGCLIYIAQVLRYDIMY 775

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BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 3.800e-19
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 0

Query:    4 FSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELI-VKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAF 99
            F M+DLG+ S  L + I RD EA T+ +SQE Y ++ILERFG+S  KP STP  G E+  ++PE +  LDEK T++YQ ++GSL+++    R+DI +
Sbjct: 1372 FKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMY 1467

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BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KG29_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG29_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 4.110e-19
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0

Query:    4 FSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAFFA 101
            F M+D+G+V   L I + RD+E GT+ +SQE YV  +LERFG+ +  PVSTP  G E+       + L     K YQ++ GS+++L   TRFD+++ A
Sbjct:  210 FEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDNKIYQSMTGSILYLAQCTRFDLSYAA 307

[Close]

BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.550e-19
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0

Query:    4 FSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAFFA 101
            F M+D+G+V   L I + RD+E GT+ +SQE YV  +LERFG+ +  PVSTP  G E+       + L     K YQ++ GS+++L   TRFD+++ A
Sbjct:   81 FEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAA 178

[Close]

BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.090e-19
Identity = 46/97 (47.42%), Postives = 67/97 (69.07%), Query Frame = 0

Query:    4 FSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELI-VKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAF 99
            F M+DLG+ S  L + I RD EA T+ +SQE Y ++ILERFG+S  KP STP  G E+  ++PE +  LDEK T++YQ ++GSL+++    R+DI +
Sbjct:  703 FKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDT-LLDEKETRKYQGIVGSLMYIAQVLRYDIMY 798

[Close]

BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Match: A0A6H5K129_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K129_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 5.130e-19
Identity = 41/96 (42.71%), Postives = 63/96 (65.62%), Query Frame = 0

Query:    4 FSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCKPVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAF 99
            F M+++G+V   L + I +D   GT+ +SQE Y ++ILERFG+S+CKP+STP  G EL  K      LDE+ T+ YQ ++G L+++    R+D+ F
Sbjct:  819 FKMTNMGEVKLVLGMDIKKDCNRGTLTISQEAYSKSILERFGMSECKPISTPGYGSELSNKQPEDTLLDEEETRRYQGIVGCLMYIAQVLRYDVMF 914

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1313.2345.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KRT7_9PHAE	1.800e-20	42.86	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KAK0_9PHAE	1.090e-19	41.84	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JME8_9PHAE	1.950e-19	47.42	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5L5U2_9PHAE	2.740e-19	47.42	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KL37_9PHAE	3.700e-19	44.79	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KJH6_9PHAE	3.800e-19	47.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KG29_9PHAE	4.110e-19	41.84	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KUJ3_9PHAE	4.550e-19	41.84	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KNH5_9PHAE	5.090e-19	47.42	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5K129_9PHAE	5.130e-19	42.71	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..55 e-value: 1.2E-8 score: 34.9
None	No IPR available	PANTHER	PTHR11439:SF257		coord: 3..99
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..99

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1313	contig	F-serratus_M_contig1313:146941..147246 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1313.2345.1	mRNA_F-serratus_M_contig1313.2345.1	Fucus serratus male	mRNA	F-serratus_M_contig1313 146941..147261 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig1313.2345.1 ID=prot_F-serratus_M_contig1313.2345.1|Name=mRNA_F-serratus_M_contig1313.2345.1|organism=Fucus serratus male|type=polypeptide|length=102bp
MAEFSMSDLGDVSETLAIRINRDFEAGTILLSQEKYVEAILERFGLSDCK
PVSTPWTGRELIVKPEGSKYLDEKGTKEYQALIGSLIFLTTNTRFDIAFF
A*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2
IPR039537	Retrotran_Ty1/copia-like