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Homology
BLAST of mRNA_F-serratus_M_contig127.2000.1 vs. uniprot
Match: D7FK60_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FK60_ECTSI) HSP 1 Score: 61.6 bits (148), Expect = 4.500e-6 Identity = 31/52 (59.62%), Postives = 35/52 (67.31%), Query Frame = 0
Query: 170 RNPDEGKRFVREVKRLGEAGDWREAISLLRAAEKDGRAVNQIMYNATIAALS 221
R ++GKRFVR +RLG G W +SLLR AE DG VN IMYNA I ALS
Sbjct: 90 RPAEDGKRFVRVAQRLGGQGKWERVLSLLRQAEGDGAVVNHIMYNAAIGALS 141
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR002885 | Pentatricopeptide repeat | PFAM | PF13041 | PPR_2 | coord: 529..576
e-value: 2.5E-11
score: 43.6
coord: 455..507
e-value: 7.1E-8
score: 32.5 |
| IPR002885 | Pentatricopeptide repeat | PFAM | PF01535 | PPR | coord: 423..445
e-value: 0.0045
score: 17.2
coord: 357..381
e-value: 0.5
score: 10.7 |
| IPR002885 | Pentatricopeptide repeat | TIGRFAM | TIGR00756 | TIGR00756 | coord: 423..457
e-value: 7.3E-7
score: 27.0
coord: 353..385
e-value: 0.0017
score: 16.4
coord: 318..351
e-value: 3.0E-5
score: 21.9
coord: 532..566
e-value: 3.9E-9
score: 34.1
coord: 605..638
e-value: 5.9E-5
score: 21.0
coord: 459..487
e-value: 8.4E-4
score: 17.4
coord: 641..674
e-value: 0.0012
score: 16.9
coord: 212..245
e-value: 8.9E-6
score: 23.6
coord: 677..710
e-value: 1.2E-6
score: 26.3
coord: 254..279
e-value: 7.5E-4
score: 17.5
coord: 497..530
e-value: 9.1E-6
score: 23.5 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 565..602
score: 9.624 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 244..278
score: 9.909 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 674..708
score: 10.841 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 420..455
score: 11.301 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 385..419
score: 7.52 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 209..243
score: 11.213 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 456..490
score: 9.558 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 495..529
score: 11.038 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 279..314
score: 9.657 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 315..349
score: 10.26 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 174..208
score: 5.174 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 638..668
score: 7.552 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 603..637
score: 10.611 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 530..564
score: 12.562 |
| IPR002885 | Pentatricopeptide repeat | PROSITE | PS51375 | PPR | coord: 350..384
score: 10.128 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 170..306
e-value: 1.1E-28
score: 102.7 |
| IPR011990 | Tetratricopeptide-like helical domain superfamily | GENE3D | 1.25.40.10 | | coord: 584..731
e-value: 2.0E-37
score: 131.2
coord: 490..583
e-value: 4.5E-26
score: 93.9
coord: 333..489
e-value: 6.4E-38
score: 132.8 |
| IPR033443 | Pentacotripeptide-repeat region of PRORP | PFAM | PF17177 | PPR_long | coord: 176..349
e-value: 1.5E-11
score: 44.1
coord: 589..718
e-value: 1.1E-9
score: 38.0 |
| None | No IPR available | PANTHER | PTHR46128 | FAMILY NOT NAMED | coord: 185..302
coord: 257..399
coord: 529..667
coord: 658..721
coord: 384..530 |
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >prot_F-serratus_M_contig127.2000.1 ID=prot_F-serratus_M_contig127.2000.1|Name=mRNA_F-serratus_M_contig127.2000.1|organism=Fucus serratus male|type=polypeptide|length=742bp
MISVNSTLNKHILSRRWSGAAGSLVRRPRKAATSTPSNEALRLLLFRQTV
NHCCCTSSLTSACSPEGTAHRPTGESDDYGRHNAVDRTGSLPTGGAEHHA
PTTAVARTSPDEAPRRPSTATSQPLQQNQLPSHRWRHNSAALGAMGNKNA
HSRKWNGTRRGVPASRGKFRNPDEGKRFVREVKRLGEAGDWREAISLLRA
AEKDGRAVNQIMYNATIAALSRSGRWQEAMSILRSMEANGVERDVRGFAA
TMVACREAGEWERAVGLLEEMKAEGIAPNFPTFCVALSACSRKGQWRRAL
SLLEVDMASAGVEPNLKAWQIVLDACVVAGRGEEAAAFLSRMRAAGVEPN
VSCYERVIYATAKKGNWELALQMLEDMGDAGLSPSGRSFAAAMKTCVEAQ
QWELVQDLLESMKQAGIPRDTWVFNICIDAYAKSGNWERAVGVLRNDMPE
AGVKPDVASWASAMHAAARAGEWTLALSLWDEMRRGGGRQAAKPNMYTYN
IAIDACGKLGLVDRAMALLEKIRSVGQVPNMITYNTAIDVCARSRRGERA
LRLLREMRSAGVEPDVVSYTSAISAFIEARGEEERELGLGLLEEMKAAGV
RPTNFTYSAAITLCSNAGDWERGLALFDELKESGQIPNSASFTAAIDSCG
VGGCWETALDLVEEMEATTGVAPTLLAFNAAIRSCCRGGKWDLGVSLLKR
MRQAHVEPDIASMNALIRGLRDRTQIVRPKEDEDLHHRVLP* back to top
Annotated Terms
The following terms have been associated with this polypeptide:
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