prot_F-serratus_M_contig1240.1843.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1240.1843.1
Unique Nameprot_F-serratus_M_contig1240.1843.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length396
Homology
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BLAST of mRNA_F-serratus_M_contig1240.1843.1 vs. uniprot
Match: D7G8H4_ECTSI (WD repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8H4_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 1.430e-75
Identity = 146/360 (40.56%), Postives = 188/360 (52.22%), Query Frame = 0 
Query:   13 SIVVRRVSC----AGDQDGEVTEMAFSAEGDHLITGTKDCGVRVWSVHSGETEVFAPPLAGINERGGYHAGHLSCDVIVDK-TRGVLMAAGSATGGVNVWCSEAGTRHMAELRDSGHPYGVPVEHLAAYPDGRLFVSADSTTMKIWSTEDFKCKRTMRSPFNIQILKVSSKCRFIFCAGE-------GRKNRGIVALWNGRKNDKALPTKGPRRS-IRVLRGHGRHIQSLYTPENEGKPNILYGLKYQQQQQKTQVLVTTSLDGRAKVWDVTSGACTRTLWGKGGLQSQLSNAALVNRGAWMVMAYNDGSIQ---QVWGLENGKCLITSDNGG--------------PRSKCLAVSRCGR 342
            SIVVR +       G   G+++E+AFSA+G HL+TG K+  VR+W   SGE E+ APPLAG NE GGYHAGHLSCD+++   +RG+LM                                                         W  +DF CKRT+RS F ++IL VS++ +F+F AGE           R +VA+W+GRK  K  P  G  R   R+L GHGR I+SLYTP N                    VLVTT+LD   K+WDV +G CT+T+W KGGLQS LSNA LVN GAW++ +Y+DGS+Q   QVW ++ GKCL+T  N                P +  LAVSRCGR
Sbjct:   20 SIVVREIRSPSAGGGRAGGDISEIAFSADGAHLLTGAKNFAVRIWGTRSGEVELLAPPLAGSNEDGGYHAGHLSCDIVLHHPSRGMLM--------------------------------------------------------FWCAKDFTCKRTIRSTFGVKILMVSARGKFVFVAGEQGXXXXXXXXXRAVVAVWDGRKRGKIYPGFGGERDPTRLLTGHGRPIRSLYTPHNPD------------------VLVTTALDATVKIWDVPTGTCTKTIWSKGGLQSPLSNAGLVNHGAWLLTSYDDGSLQTTGQVWIIQTGKCLLTLVNAAAAAAAADGVAVLPRPGAARLAVSRCGR 305
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1240.1843.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8H4_ECTSI1.430e-7540.56WD repeat-containing protein n=1 Tax=Ectocarpus si... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 15..54
e-value: 0.11
score: 21.6
coord: 318..356
e-value: 340.0
score: 1.0
coord: 212..269
e-value: 0.61
score: 18.3
coord: 112..154
e-value: 3.0
score: 14.0
coord: 157..199
e-value: 300.0
score: 1.3
IPR001680WD40 repeatPFAMPF00400WD40coord: 27..54
e-value: 0.0027
score: 18.5
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 22..63
score: 11.31
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 256..278
score: 9.172
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 8..212
e-value: 6.2E-18
score: 66.6
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 213..371
e-value: 3.5E-14
score: 54.4
NoneNo IPR availablePANTHERPTHR44129FAMILY NOT NAMEDcoord: 17..358
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 256..270
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 22..63
score: 10.786
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 25..358

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1240contigF-serratus_M_contig1240:127345..130438 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1240.1843.1mRNA_F-serratus_M_contig1240.1843.1Fucus serratus malemRNAF-serratus_M_contig1240 127345..130518 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1240.1843.1 ID=prot_F-serratus_M_contig1240.1843.1|Name=mRNA_F-serratus_M_contig1240.1843.1|organism=Fucus serratus male|type=polypeptide|length=396bp
MKGVKHASGRCGSIVVRRVSCAGDQDGEVTEMAFSAEGDHLITGTKDCGV
RVWSVHSGETEVFAPPLAGINERGGYHAGHLSCDVIVDKTRGVLMAAGSA
TGGVNVWCSEAGTRHMAELRDSGHPYGVPVEHLAAYPDGRLFVSADSTTM
KIWSTEDFKCKRTMRSPFNIQILKVSSKCRFIFCAGEGRKNRGIVALWNG
RKNDKALPTKGPRRSIRVLRGHGRHIQSLYTPENEGKPNILYGLKYQQQQ
QKTQVLVTTSLDGRAKVWDVTSGACTRTLWGKGGLQSQLSNAALVNRGAW
MVMAYNDGSIQQVWGLENGKCLITSDNGGPRSKCLAVSRCGRLVAFAIGK
SVQVIDFDRLADRSRAGRPSEPGTYLRQALRFITAPNVFGKKSLN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR036322WD40_repeat_dom_sf