prot_F-serratus_M_contig124.1825.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig124.1825.1
Unique Nameprot_F-serratus_M_contig124.1825.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length232
Homology
BLAST of mRNA_F-serratus_M_contig124.1825.1 vs. uniprot
Match: D7G689_ECTSI (Small nuclear ribonucleoprotein-associated protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G689_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 6.730e-66
Identity = 124/180 (68.89%), Postives = 127/180 (70.56%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPA-GIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAGEWMAASAQAQQYGRGGVPMMPRGPPGQMPPGGRGM 179
            MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYR+FKPKKGS+ A GIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAED GKATPG                                         QA   +AASAQAQ YGRG    M RGPPGQMPPGGRGM
Sbjct:    3 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRRFKPKKGSEAAAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDTGKATPGGPGVGRAAGRGVPTMPVQGAPRGLAGPVRGIGGPASSMMQPQA---VAASAQAQAYGRGAP--MGRGPPGQMPPGGRGM 177          
BLAST of mRNA_F-serratus_M_contig124.1825.1 vs. uniprot
Match: A0A4D9CW50_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CW50_9STRA)

HSP 1 Score: 149 bits (376), Expect = 2.190e-41
Identity = 77/103 (74.76%), Postives = 87/103 (84.47%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAG---IHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPG 100
            MS+SSKML Y+NYRMR+TI D R LVGT MAFDRH+NLVLGDCEEYRK K KKGS  +G   I EE+EEKR+LGLVLLRGENV SLTVEGPPP +++ KATPG
Sbjct:    3 MSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPNAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPG 105          
BLAST of mRNA_F-serratus_M_contig124.1825.1 vs. uniprot
Match: A0A836CGG1_9STRA (Sm domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGG1_9STRA)

HSP 1 Score: 150 bits (378), Expect = 4.180e-41
Identity = 76/100 (76.00%), Postives = 85/100 (85.00%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPG 100
            M+RSSKML YVNYRMR+TI+D RVL+GT MAFDRH+N+VLGDCEE+RK K KKG Q A  HEEREEKR LGLVL+RGENV SLTVEGPPP E+ G A PG
Sbjct:    3 MARSSKMLHYVNYRMRVTIMDSRVLIGTFMAFDRHMNIVLGDCEEHRKIKSKKG-QGAHAHEEREEKRTLGLVLVRGENVVSLTVEGPPPPEEGGTAKPG 101          
BLAST of mRNA_F-serratus_M_contig124.1825.1 vs. uniprot
Match: A0A6V3BNK5_HETAK (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V3BNK5_HETAK)

HSP 1 Score: 147 bits (370), Expect = 1.230e-40
Identity = 75/100 (75.00%), Postives = 84/100 (84.00%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPG 100
            MSRSSKMLQY+NYRMR+T+ DGR+LVGT MAFDRH+NL LGD EEYRK K KKG    G+ E+REEKR LGLVL+RGENV SL+VEGPPP ED  KATPG
Sbjct:    3 MSRSSKMLQYINYRMRVTLQDGRMLVGTFMAFDRHMNLCLGDTEEYRKLKNKKGQ---GVVEDREEKRALGLVLVRGENVVSLSVEGPPPPEDDAKATPG 99          
BLAST of mRNA_F-serratus_M_contig124.1825.1 vs. uniprot
Match: W7TUE2_9STRA (Small nuclear ribonucleoprotein associated protein b n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUE2_9STRA)

HSP 1 Score: 150 bits (378), Expect = 6.550e-40
Identity = 77/103 (74.76%), Postives = 86/103 (83.50%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQ---PAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPG 100
            MS+SSKML Y+NYRMR+TI D R LVGT MAFDRH+NLVLGDCEEYRK K KKGS    P  I EE+EEKR+LGLVLLRGENV SLTVEGPPP +++ KATPG
Sbjct:   37 MSKSSKMLNYINYRMRVTIQDNRTLVGTFMAFDRHMNLVLGDCEEYRKVKNKKGSGGSGPTAIVEEKEEKRMLGLVLLRGENVVSLTVEGPPPPDEEAKATPG 139          
BLAST of mRNA_F-serratus_M_contig124.1825.1 vs. uniprot
Match: A0A7S2HQ73_9STRA (Small nuclear ribonucleoprotein-associated protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQ73_9STRA)

HSP 1 Score: 138 bits (348), Expect = 3.670e-37
Identity = 68/100 (68.00%), Postives = 82/100 (82.00%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPG 100
            M++SSKML ++NYRMR+TI D R LVGT MAFD+H+NLVLGDCEEYRK K KKG    G+ EEREEKR LGLVL+RGE V S++VEGPPP +++GK  PG
Sbjct:    3 MAKSSKMLNFINYRMRVTIQDSRCLVGTFMAFDKHMNLVLGDCEEYRKIKAKKG---VGVQEEREEKRTLGLVLVRGEMVVSMSVEGPPPPDNEGKEAPG 99          
BLAST of mRNA_F-serratus_M_contig124.1825.1 vs. uniprot
Match: A0A6J1CZ42_MOMCH (small nuclear ribonucleoprotein-associated protein B'-like n=1 Tax=Momordica charantia TaxID=3673 RepID=A0A6J1CZ42_MOMCH)

HSP 1 Score: 133 bits (335), Expect = 2.430e-36
Identity = 67/93 (72.04%), Postives = 78/93 (83.87%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAED 93
            MS+SSKMLQY+NYRMR+TI DGR LVG  MAFDRH+NLVLGDCEE+RK  P KG +    +EER+E+R LGLVLLRGE V S+TVEGPPPAE+
Sbjct:    3 MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPGKGKK---TNEERDERRTLGLVLLRGEEVISMTVEGPPPAEE 92          
BLAST of mRNA_F-serratus_M_contig124.1825.1 vs. uniprot
Match: UPI0011D2352D (small nuclear ribonucleoprotein-associated protein B'-like n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2352D)

HSP 1 Score: 131 bits (330), Expect = 7.980e-36
Identity = 65/93 (69.89%), Postives = 77/93 (82.80%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAED 93
            MS+SSKMLQY+NYRMR+TI DGR LVG  MAFDRH+NLVLGDCEE+RK  P KGS+P     +RE++R LGLVLLRGE V S+TVEGPPP ++
Sbjct:    3 MSKSSKMLQYINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGSKPNAA--DREDRRTLGLVLLRGEEVISMTVEGPPPPDE 93          
BLAST of mRNA_F-serratus_M_contig124.1825.1 vs. uniprot
Match: A0A2I0AW41_9ASPA (Small nuclear ribonucleoprotein-associated protein n=5 Tax=Orchidaceae TaxID=4747 RepID=A0A2I0AW41_9ASPA)

HSP 1 Score: 136 bits (343), Expect = 1.360e-35
Identity = 71/101 (70.30%), Postives = 82/101 (81.19%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAG--IHEEREEKRVLGLVLLRGENVQSLTVEGPPPA-EDKGKAT 98
            MS+ SKMLQY+NYRMR+TI DGR+LVG  MAFDRH+NLVLGDCEE+RK  P KGS+ AG    EERE++R LGLVLLRGE V S+TVEGPPP  E + KAT
Sbjct:    3 MSKGSKMLQYINYRMRVTIQDGRMLVGKFMAFDRHMNLVLGDCEEFRKLPPTKGSKKAGGGTAEEREDRRTLGLVLLRGEEVVSMTVEGPPPXDESRAKAT 103          
BLAST of mRNA_F-serratus_M_contig124.1825.1 vs. uniprot
Match: A0A4P1RS25_LUPAN (Small nuclear ribonucleoprotein-associated protein n=6 Tax=Lupinus TaxID=3869 RepID=A0A4P1RS25_LUPAN)

HSP 1 Score: 134 bits (337), Expect = 8.690e-35
Identity = 67/93 (72.04%), Postives = 78/93 (83.87%), Query Frame = 0
Query:    1 MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFKPKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAED 93
            MS+SSKMLQ++NYRMR+TI DGR LVG  MAFDRH+NLVLGDCEE+RK  P KG +PA   EERE++R LGLVLLRGE V S+TVEGPPP E+
Sbjct:    3 MSKSSKMLQFINYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEEFRKLPPAKGKKPA---EEREDRRTLGLVLLRGEEVISMTVEGPPPPEE 92          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig124.1825.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G689_ECTSI6.730e-6668.89Small nuclear ribonucleoprotein-associated protein... [more]
A0A4D9CW50_9STRA2.190e-4174.76Small nuclear ribonucleoprotein-associated protein... [more]
A0A836CGG1_9STRA4.180e-4176.00Sm domain-containing protein n=1 Tax=Tribonema min... [more]
A0A6V3BNK5_HETAK1.230e-4075.00Small nuclear ribonucleoprotein-associated protein... [more]
W7TUE2_9STRA6.550e-4074.76Small nuclear ribonucleoprotein associated protein... [more]
A0A7S2HQ73_9STRA3.670e-3768.00Small nuclear ribonucleoprotein-associated protein... [more]
A0A6J1CZ42_MOMCH2.430e-3672.04small nuclear ribonucleoprotein-associated protein... [more]
UPI0011D2352D7.980e-3669.89small nuclear ribonucleoprotein-associated protein... [more]
A0A2I0AW41_9ASPA1.360e-3570.30Small nuclear ribonucleoprotein-associated protein... [more]
A0A4P1RS25_LUPAN8.690e-3572.04Small nuclear ribonucleoprotein-associated protein... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..85
e-value: 2.4E-20
score: 83.6
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 7..83
e-value: 1.4E-18
score: 66.4
IPR017131Small ribonucleoprotein associated, SmB/SmNPIRSFPIRSF037187SmB_SmNcoord: 1..230
e-value: 1.3E-67
score: 225.8
NoneNo IPR availableGENE3D2.30.30.100coord: 1..94
e-value: 3.8E-33
score: 115.1
NoneNo IPR availablePANTHERPTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND Ncoord: 1..229
NoneNo IPR availablePANTHERPTHR10701:SF0SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B'coord: 1..229
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 24..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 33..41
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 42..231
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 5..142

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig124contigF-serratus_M_contig124:515596..517705 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig124.1825.1mRNA_F-serratus_M_contig124.1825.1Fucus serratus malemRNAF-serratus_M_contig124 515590..517779 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig124.1825.1 ID=prot_F-serratus_M_contig124.1825.1|Name=mRNA_F-serratus_M_contig124.1825.1|organism=Fucus serratus male|type=polypeptide|length=232bp
MSRSSKMLQYVNYRMRITILDGRVLVGTLMAFDRHLNLVLGDCEEYRKFK
PKKGSQPAGIHEEREEKRVLGLVLLRGENVQSLTVEGPPPAEDKGKATPG
GPGVGKAAGRGVPTMPATGAARGLAGPVRGIGGPASSMMQPQAGEWMAAS
AQAQQYGRGGVPMMPRGPPGQMPPGGRGMPPAGYGGPPGGMGMPPMGGYP
QGMPPGMGRGMPPPGQGNYHPRPGMPPPRSG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR017131snRNP-assoc_SmB/SmN
IPR010920LSM_dom_sf