prot_F-serratus_M_contig1232.1761.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_F-serratus_M_contig1232.1761.1
Unique Name	prot_F-serratus_M_contig1232.1761.1
Type	polypeptide
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length	624

Homology

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BLAST of mRNA_F-serratus_M_contig1232.1761.1 vs. uniprot
Match: A0A6H5K9F0_9PHAE (Cyclin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9F0_9PHAE)

HSP 1 Score: 340 bits (872), Expect = 1.870e-105
Identity = 204/368 (55.43%), Postives = 246/368 (66.85%), Query Frame = 0

Query:  169 MSELGRTRGAGE-DNDLRCIEVSALGGS-TSFSREHRVEPSGPRCGNNQE--------QTVEDFLAALLLKTDTYRPRQEGVKCMGNRAFLHMRAAVVNWFSSVSESYKFSNEAILTAICNFDRYVALRVEAVDDHLLLQLVAYVALLVASKMTETIPLRMKSLANLTGRMFTPRQVQRCEMDMLCKLQFRLAPPSADEILLCLSALI--------HKPWPSGVSMRN-VQSMGSYFLKKARVRSCWFRHSPYTLAVAALATAYKSLGLGQLRRRLLRECDARARRVKGRGVDIRGVAFCAEAMANDERAAAAAVALA--------ARGGNGSPA--PINSDQKVGWGSPTGVAHGAEVLRDMTFSMV 507
            MSEL R    GE D DL C+EVSALG +    +R  RV   G +    QE        Q  E+FL +LL KT+ YRP +   + M +  FL MR AVVNWF+ VS SY F+NE ++ A+ +FDRYV+L V  V+DH+LLQL AYVALL+ASKM ET PLRM+SLANLTGRMFTP QV++ EMDM+ KL FRLAPPS DE L CLS+L+        +K    GV + + V S  S++LK+AR R+CWFRH+PYTLAVAALATAY S+GLG+ RRRLLRECDAR+R V GRGVD+ GVA CA+AM  DERAAA              ARG   SP     N+  K GWGSPTGVA GAE+L+   FS V
Sbjct:    1 MSELSRLLPRGEEDTDLLCVEVSALGQAPVPATRLPRVSCDGWQLQEKQEVFRDGSADQAHEEFLTSLLAKTNAYRPLETSWQVMEDAEFLDMRGAVVNWFAKVSVSYDFANETVVAALSHFDRYVSLTVTPVNDHMLLQLAAYVALLIASKMGETCPLRMRSLANLTGRMFTPLQVKQLEMDMISKLNFRLAPPSPDEALHCLSSLLLRSSSSSDNKSGRGGVPLHSDVLSASSHYLKRARARTCWFRHAPYTLAVAALATAYNSVGLGKERRRLLRECDARSRAVTGRGVDVHGVAACADAMVRDERAAAXXXXXXXXXXNSGHARGSTESPVCGGSNTAAKDGWGSPTGVAQGAELLQKAAFSAV 368

[Close]

BLAST of mRNA_F-serratus_M_contig1232.1761.1 vs. uniprot
Match: A0A1V9ZK22_9STRA (CYCLIN domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZK22_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 4.560e-5
Identity = 51/176 (28.98%), Postives = 85/176 (48.30%), Query Frame = 0

Query:  183 DLRCIEVSALGGSTSFSREHRVEPSGPRCGNNQEQTVEDFLAALLLKTDTYRPRQEG----VKCMGNRAFLHMRAAVVNWFSSVSESYKFSNEAILTAICNFDRYVALRVEAVDDHLLLQLVAYVALLVASKMTETIPLRMKSLANLTGRMFTPRQVQRCEMDMLCKLQFRLAPPS 354
            DL C+E    G ++       +EPS           + + L  +LL  +  +PR  G    V+ MG +  +  R  +V W     ++++   + +  AI   D Y+A   +   D ++LQLVA VA+ VASKM ET P+ M+ +  L    +  R++   E  +L  +Q+RL PP+
Sbjct:    3 DLSCVEELTPGAASEV-----LEPSA----------ILNHLQ-ILLTAEAKKPRPGGYMTKVQNMGMQ--VSWRKRMVEWMIHTGKAFELCPDTVFCAIHLMDDYLA---KLPVDKIVLQLVAMVAMYVASKMHETRPILMEEMELLCQNKYPRREIVNMEKQLLKVVQWRLNPPT 157

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig1232.1761.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig1232.1761.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A6H5K9F0_9PHAE	1.870e-105	55.43	Cyclin N-terminal domain-containing protein n=2 Ta...	[more]
A0A1V9ZK22_9STRA	4.560e-5	28.98	CYCLIN domain-containing protein (Fragment) n=1 Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013763	Cyclin-like	SMART	SM00385	cyclin_7	coord: 257..344 e-value: 7.6E-4 score: 28.8
None	No IPR available	GENE3D	1.10.472.10		coord: 236..351 e-value: 1.6E-28 score: 101.6
None	No IPR available	GENE3D	1.10.472.10		coord: 223..420 e-value: 1.6E-28 score: 101.6
IPR006671	Cyclin, N-terminal	PFAM	PF00134	Cyclin_N	coord: 234..350 e-value: 1.1E-19 score: 70.4
IPR039361	Cyclin	PANTHER	PTHR10177	CYCLINE	coord: 250..418
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 218..350

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig1232	contig	F-serratus_M_contig1232:181528..188895 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Fucus serratus MALE	2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-16
OGS1.0 of Fucus serratus male	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig1232.1761.1	mRNA_F-serratus_M_contig1232.1761.1	Fucus serratus male	mRNA	F-serratus_M_contig1232 181461..190984 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_F-serratus_M_contig1232.1761.1 ID=prot_F-serratus_M_contig1232.1761.1|Name=mRNA_F-serratus_M_contig1232.1761.1|organism=Fucus serratus male|type=polypeptide|length=624bp
MPRKSLPTAPCPTGHDDYIGEKIWRNSSSPTSYWTPTSHNQNIRHCSACS
RPLAGPRSSVPSLVLRTQGANCLGRTLPHQNSLPKKLCADHLDEETERTD
YRFHRPSVEGRRPQQAYALSGDGITTCGSPRTARDSATFCSSVYISDNSS
RSETACVVYSPRRNQLPAMSELGRTRGAGEDNDLRCIEVSALGGSTSFSR
EHRVEPSGPRCGNNQEQTVEDFLAALLLKTDTYRPRQEGVKCMGNRAFLH
MRAAVVNWFSSVSESYKFSNEAILTAICNFDRYVALRVEAVDDHLLLQLV
AYVALLVASKMTETIPLRMKSLANLTGRMFTPRQVQRCEMDMLCKLQFRL
APPSADEILLCLSALIHKPWPSGVSMRNVQSMGSYFLKKARVRSCWFRHS
PYTLAVAALATAYKSLGLGQLRRRLLRECDARARRVKGRGVDIRGVAFCA
EAMANDERAAAAAVALAARGGNGSPAPINSDQKVGWGSPTGVAHGAEVLR
DMTFSMVAAGPYPHPIAPPLLPKSVGPPAFPKPARVQGAPVSNVPTVSAV
SVTRGQGQQIGKKRGLPQSSGSCFEPRRRRASVCGLVGRIAMVDAAQALA
VARGTQEDQLEEGVGCVSWNPQS*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013763	Cyclin-like
IPR006671	Cyclin_N
IPR039361	Cyclin
IPR036915	Cyclin-like_sf