prot_F-serratus_M_contig1220.1713.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1220.1713.1
Unique Nameprot_F-serratus_M_contig1220.1713.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length229
Homology
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BLAST of mRNA_F-serratus_M_contig1220.1713.1 vs. uniprot
Match: D8LCM4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM4_ECTSI)

HSP 1 Score: 84.0 bits (206), Expect = 5.180e-15
Identity = 125/243 (51.44%), Postives = 141/243 (58.02%), Query Frame = 0 
Query:   17 ATQASKKALVKKAAALGKRGAWQEAIFEVDSAIRGGLSPDAYVYGSCVGAAAHSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGAP----------------------PAVDVAGPNSFRPREQCGNSCLGDEAEAKADLLSEAQRRCRGGGGGVGAEDRFSA----------------PDIQTFNTVMSACGRAGQWELALEMMSQAREQWGLCLTRVTY 221
            A  A+KK+LVKK   LGK G W++AI EVDSAI GGL PD YVYGSCVGAAA +XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   A                       PA+      S       G S        + D+  E  R    GGG  G+                      PDIQT NTVM+AC   G+WELALE+M +A+ + GL  TR+TY
Sbjct:   44 AAMAAKKSLVKKVKDLGKVGRWRQAISEVDSAIEGGLLPDEYVYGSCVGAAADNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNAAKANAAPXXXXXXXXXXXXXVAESPAIGDGSSWSG----VVGRSGTARVRAGEGDVRKEGLRLNGVGGGAKGSRSXXXXXSRRTGPGAACSSDYDPDIQTINTVMAACAAEGEWELALEVMKKAQREDGLHPTRITY 282
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1220.1713.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCM4_ECTSI5.180e-1551.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 184..207
e-value: 1.5E-4
score: 21.7
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 49..103
e-value: 2.2E-5
score: 24.4
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 58..91
e-value: 5.8E-6
score: 24.2
coord: 184..213
e-value: 2.1E-6
score: 25.6
coord: 94..125
e-value: 3.0E-5
score: 21.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 181..211
score: 9.646
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 56..90
score: 11.049
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 91..125
score: 10.073
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 141..229
e-value: 1.7E-10
score: 42.8
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 4..132
e-value: 5.4E-22
score: 80.0
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 18..126
coord: 179..228

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1220contigF-serratus_M_contig1220:49622..59130 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1220.1713.1mRNA_F-serratus_M_contig1220.1713.1Fucus serratus malemRNAF-serratus_M_contig1220 49608..59130 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1220.1713.1 ID=prot_F-serratus_M_contig1220.1713.1|Name=mRNA_F-serratus_M_contig1220.1713.1|organism=Fucus serratus male|type=polypeptide|length=229bp
MSGRARRQRNRRRRERATQASKKALVKKAAALGKRGAWQEAIFEVDSAIR
GGLSPDAYVYGSCVGAAAHSGRWREAMDLLRRMRGEGIVPTTPVFNAAIK
ACSKAGKLKLALALLDDMCAYGAPPAVDVAGPNSFRPREQCGNSCLGDEA
EAKADLLSEAQRRCRGGGGGVGAEDRFSAPDIQTFNTVMSACGRAGQWEL
ALEMMSQAREQWGLCLTRVTYNTAIAACG
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf