prot_F-serratus_M_contig116.1329.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig116.1329.1
Unique Nameprot_F-serratus_M_contig116.1329.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length108
Homology
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BLAST of mRNA_F-serratus_M_contig116.1329.1 vs. uniprot
Match: D7FM73_ECTSI (Fibronectin type-III domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FM73_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 6.190e-45
Identity = 73/111 (65.77%), Postives = 82/111 (73.87%), Query Frame = 0 
Query:    1 MEVPQLQFKECQLDSITLSWNASAGVGYRLEYREIIVPDWADCHSKTIPSGESSEIT----VTSLNPSSSYIFRLYTIAPGGAESGPGPEVAFDTEVVSCAPTQTGCCTIS 107
            M VPQLQFK+C+LDSITLSW  + G GY+LE+REI+V DWA C S  I   +SS       VT LNPSSSYIFRLYT+   G E GPGPE+AFDTEVVSCAPT   CCTIS
Sbjct:    1 MAVPQLQFKDCELDSITLSWERAEGTGYKLEFREILVSDWAGCRSIAIAPEQSSSTEMSTKVTGLNPSSSYIFRLYTVTAAGQEVGPGPEIAFDTEVVSCAPTNKSCCTIS 111
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BLAST of mRNA_F-serratus_M_contig116.1329.1 vs. uniprot
Match: A0A835YPU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPU1_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 9.080e-25
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 0 
Query:    2 EVPQLQFKECQLDSITLSWNASAGVGYRLEYREIIVPDWADCHSKTIPSGESSEITV--TSLNPSSSYIFRLYTIAPGGAESGPGPEVAFDTEVVSCAPTQTGCC 104
            ++P L+F+ C L+S+TL W    GV Y+LE+R++    W    S  IP  ++   TV  T L PS +YIFRL+ +  GG   GPGP+ AFDTEVVSC PT    C
Sbjct:    7 KLPVLRFQSCDLESLTLEWAGEPGVEYKLEFRDVNRKGWDSAFSLRIPPSQTGHETVKVTDLLPSMTYIFRLWIMGAGGKLEGPGPDTAFDTEVVSCTPTSRSVC 111
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig116.1329.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FM73_ECTSI6.190e-4565.77Fibronectin type-III domain-containing protein n=2... [more]
A0A835YPU1_9STRA9.080e-2545.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 1..82
e-value: 0.0038
score: 26.4
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 3..78
e-value: 1.0E-8
score: 35.4
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 3..94
score: 13.531
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 3..102
e-value: 2.8E-10
score: 42.1
IPR036116Fibronectin type III superfamilySUPERFAMILY49265Fibronectin type IIIcoord: 5..91

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig116contigF-serratus_M_contig116:723724..736719 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig116.1329.1mRNA_F-serratus_M_contig116.1329.1Fucus serratus malemRNAF-serratus_M_contig116 723724..737644 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig116.1329.1 ID=prot_F-serratus_M_contig116.1329.1|Name=mRNA_F-serratus_M_contig116.1329.1|organism=Fucus serratus male|type=polypeptide|length=108bp
MEVPQLQFKECQLDSITLSWNASAGVGYRLEYREIIVPDWADCHSKTIPS
GESSEITVTSLNPSSSYIFRLYTIAPGGAESGPGPEVAFDTEVVSCAPTQ
TGCCTIS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR013783Ig-like_fold
IPR036116FN3_sf