prot_F-serratus_M_contig1146.1249.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1146.1249.1
Unique Nameprot_F-serratus_M_contig1146.1249.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length51
Homology
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A392MNS0_9FABA (Copia-type polyprotein n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392MNS0_9FABA)

HSP 1 Score: 50.4 bits (119), Expect = 7.780e-6
Identity = 24/49 (48.98%), Postives = 31/49 (63.27%), Query Frame = 0
Query:    3 KEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTSR 51
            K+ R   A H   RA+  +++V  D  GPF  SLGG+RYFV+FVD  SR
Sbjct:   22 KQARKSFADHIAVRARDKLDIVHSDVCGPFTESLGGNRYFVSFVDEFSR 70          
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: A0A2K3JX10_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JX10_TRIPR)

HSP 1 Score: 47.4 bits (111), Expect = 4.060e-5
Identity = 22/48 (45.83%), Postives = 30/48 (62.50%), Query Frame = 0
Query:    3 KEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTS 50
            K+ R   A H   RA+  +++V  D  GPF  SLGG+RY+V+FVD  S
Sbjct:   22 KQARKSFADHIAVRARGKLDIVHSDVCGPFTESLGGNRYYVSFVDEFS 69          
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Match: UPI001D001203 (uncharacterized protein LOC26513718 n=1 Tax=Drosophila ananassae TaxID=7217 RepID=UPI001D001203)

HSP 1 Score: 47.4 bits (111), Expect = 9.660e-5
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 0
Query:   13 TTARAKRPMELVRMDTTGPFPA-SLGGSRYFVTFVDSTSR 51
            T+ RAK  ++LV  D  GPFP  SLGGS+YF+TF+D  SR
Sbjct:  446 TSNRAKEILDLVHADVCGPFPTLSLGGSKYFLTFIDDKSR 485          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1146.1249.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A392MNS0_9FABA7.780e-648.98Copia-type polyprotein n=1 Tax=Trifolium medium Ta... [more]
A0A2K3JX10_TRIPR4.060e-545.83Retrovirus-related Pol polyprotein from transposon... [more]
UPI001D0012039.660e-557.50uncharacterized protein LOC26513718 n=1 Tax=Drosop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 10..51
e-value: 1.6E-6
score: 29.5
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 16..51
score: 8.617
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 16..51

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1146contigF-serratus_M_contig1146:35767..35919 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1146.1249.1mRNA_F-serratus_M_contig1146.1249.1Fucus serratus malemRNAF-serratus_M_contig1146 35767..35943 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1146.1249.1 ID=prot_F-serratus_M_contig1146.1249.1|Name=mRNA_F-serratus_M_contig1146.1249.1|organism=Fucus serratus male|type=polypeptide|length=51bp
MAKEIRAPTAHHTTARAKRPMELVRMDTTGPFPASLGGSRYFVTFVDSTS
R
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf
IPR001584Integrase_cat-core
IPR012337RNaseH-like_sf