prot_F-serratus_M_contig105.527.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig105.527.1
Unique Nameprot_F-serratus_M_contig105.527.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length129
Homology
BLAST of mRNA_F-serratus_M_contig105.527.1 vs. uniprot
Match: Q5XEV3_ARATH (At4g03410 n=8 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q5XEV3_ARATH)

HSP 1 Score: 114 bits (284), Expect = 4.430e-28
Identity = 51/98 (52.04%), Postives = 65/98 (66.33%), Query Frame = 0
Query:   11 WWVAAPKVVVDQILWGPFWNAVYIWFVGTLKGDSFETNREAVVTTALPLVIAGIRLWPLAHLVTYGVIPTENRLLWVDFVEIIWVTILSRQAAEQARA 108
            WWV   KV  DQ +W   WN++Y   +G L+  S       + TT LP++ AG +LWPLAHLVTYGVIP + RLLWVD +E+IWVTILS  + E+A A
Sbjct:  205 WWVVPAKVAFDQTVWSAIWNSIYFTVLGLLRFQSPADIFSEIKTTFLPMLTAGWKLWPLAHLVTYGVIPVDQRLLWVDCIELIWVTILSTYSNEKAEA 302          
BLAST of mRNA_F-serratus_M_contig105.527.1 vs. uniprot
Match: A0A498IM81_MALDO (Uncharacterized protein n=1 Tax=Malus domestica TaxID=3750 RepID=A0A498IM81_MALDO)

HSP 1 Score: 109 bits (273), Expect = 5.060e-28
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 0
Query:   11 WWVAAPKVVVDQILWGPFWNAVYIWFVGTLKGDSFETNREAVVTTALPLVIAGIRLWPLAHLVTYGVIPTENRLLWVDFVEIIWVTILSRQAAEQARA 108
            WWV   KV  DQ +W   WN++Y   +G L+ +S  +    +    LP++ AG +LWP AHLVTYGVIP E RLLWVD VE+IWVTILS  + E++ A
Sbjct:   24 WWVVPVKVAFDQTVWAAIWNSIYFTVLGFLRFESLISIFSELKAAFLPMLTAGWKLWPFAHLVTYGVIPVEQRLLWVDCVELIWVTILSTYSNEKSEA 121          
BLAST of mRNA_F-serratus_M_contig105.527.1 vs. uniprot
Match: UPI0019221EC0 (LOW QUALITY PROTEIN: protein SYM1-like n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI0019221EC0)

HSP 1 Score: 114 bits (284), Expect = 5.990e-28
Identity = 52/108 (48.15%), Postives = 69/108 (63.89%), Query Frame = 0
Query:    9 DFWWVAAPKVVVDQILWGPFWNAVYIWFVGTLKGDSFETNREAVVTTALPLVIAGIRLWPLAHLVTYGVIPTENRLLWVDFVEIIWVTILSRQAAEQARANDEPDGES 116
            D WWV   KV+ DQ +W   WN +Y   +G L+ +S +   E +  T  P++ AG +LWP AHL+TYGVIP E RLLWVD VE+IWVTILS  + E++ A    D +S
Sbjct:  223 DDWWVVPAKVLFDQTVWAAIWNTIYFVVLGFLRFESSDNIFEELKATFWPMLTAGWKLWPFAHLITYGVIPVEQRLLWVDCVELIWVTILSTYSNEKSEARITEDADS 330          
BLAST of mRNA_F-serratus_M_contig105.527.1 vs. uniprot
Match: A0A452Y228_AEGTS (Uncharacterized protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A452Y228_AEGTS)

HSP 1 Score: 108 bits (269), Expect = 8.060e-28
Identity = 50/108 (46.30%), Postives = 67/108 (62.04%), Query Frame = 0
Query:    1 MFDFIDWNDFWWVAAPKVVVDQILWGPFWNAVYIWFVGTLKGDSFETNREAVVTTALPLVIAGIRLWPLAHLVTYGVIPTENRLLWVDFVEIIWVTILSRQAAEQARA 108
            +F F DW    W    KV  DQ  W   WN++Y   +G L+ +S  T  + +  T  P++ AG +LWP AHL+TYGV+P E RLLWVD VE+IWVTILS  + E++ A
Sbjct:   11 LFPFKDW----WAVPVKVAFDQTAWSALWNSIYFVALGFLRWESPSTIYKELKATFFPMLTAGWKLWPFAHLITYGVVPIEQRLLWVDCVELIWVTILSTYSNEKSEA 114          
BLAST of mRNA_F-serratus_M_contig105.527.1 vs. uniprot
Match: UPI000A29A99C (protein SYM1 isoform X3 n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=UPI000A29A99C)

HSP 1 Score: 112 bits (279), Expect = 8.660e-28
Identity = 50/98 (51.02%), Postives = 64/98 (65.31%), Query Frame = 0
Query:   11 WWVAAPKVVVDQILWGPFWNAVYIWFVGTLKGDSFETNREAVVTTALPLVIAGIRLWPLAHLVTYGVIPTENRLLWVDFVEIIWVTILSRQAAEQARA 108
            WWV   KV  DQ +W   WN++Y   +G L+  S       + TT  P++ AG +LWPLAHLVTYGVIP + RLLWVD +E+IWVTILS  + E+A A
Sbjct:  153 WWVVPAKVAFDQTIWSAIWNSIYFTVLGLLRFQSPADIFSEIKTTFWPMLTAGWKLWPLAHLVTYGVIPVDQRLLWVDCIELIWVTILSTYSNEKAEA 250          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig105.527.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q5XEV3_ARATH4.430e-2852.04At4g03410 n=8 Tax=Arabidopsis thaliana TaxID=3702 ... [more]
A0A498IM81_MALDO5.060e-2850.00Uncharacterized protein n=1 Tax=Malus domestica Ta... [more]
UPI0019221EC05.990e-2848.15LOW QUALITY PROTEIN: protein SYM1-like n=1 Tax=Hib... [more]
A0A452Y228_AEGTS8.060e-2846.30Uncharacterized protein n=1 Tax=Aegilops tauschii ... [more]
UPI000A29A99C8.660e-2851.02protein SYM1 isoform X3 n=1 Tax=Arabidopsis lyrata... [more]

Pages

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007248Mpv17/PMP22PFAMPF04117Mpv17_PMP22coord: 38..99
e-value: 5.7E-13
score: 48.9
IPR007248Mpv17/PMP22PANTHERPTHR11266PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17coord: 11..116
NoneNo IPR availablePANTHERPTHR11266:SF16coord: 11..116

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig105contigF-serratus_M_contig105:845316..846359 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig105.527.1mRNA_F-serratus_M_contig105.527.1Fucus serratus malemRNAF-serratus_M_contig105 844079..851513 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig105.527.1 ID=prot_F-serratus_M_contig105.527.1|Name=mRNA_F-serratus_M_contig105.527.1|organism=Fucus serratus male|type=polypeptide|length=129bp
MFDFIDWNDFWWVAAPKVVVDQILWGPFWNAVYIWFVGTLKGDSFETNRE
AVVTTALPLVIAGIRLWPLAHLVTYGVIPTENRLLWVDFVEIIWVTILSR
QAAEQARANDEPDGESAAAGEVQEEAGT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007248Mpv17_PMP22