prot_F-serratus_M_contig1030.351.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1030.351.1
Unique Nameprot_F-serratus_M_contig1030.351.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length1718
Homology
BLAST of mRNA_F-serratus_M_contig1030.351.1 vs. uniprot
Match: A0A6H5KFG5_9PHAE (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFG5_9PHAE)

HSP 1 Score: 841 bits (2172), Expect = 3.040e-271
Identity = 788/1800 (43.78%), Postives = 951/1800 (52.83%), Query Frame = 0
Query:    1 MAMAAGGP----GDGVLTRDASTIEDYILLMSDEMVAEDEAEGMAGQDLTAD------APFRRQ--PGLSLSEALDRAETASARPPRPANLLDLAALIRPLRLGPRTKAREGQSASNLKKRNGKEKAQALPTPPGEASGTKRAVHDGEAG---QMATARSTKRRRMDPNAILCPFELNGVCNDDDCRYQHAENYLPLPASPPSTPRPIALQAAPAPVARVAPAKGPGRNDSGKSKPGGNEAAXXXXXXXXXXXXXXXLVPVPVP----AAPNGSRGGTTRRWELPVIDFEAGTKDEASRRGKVWRAKGPRPNGEVEFPAEETEARTKRPRASGGGAESLTVESGERAKPPGSSGSDFGSIGAEVEKAGVGIDEGSDRDGDGGVGVVGTRRGSATDSEIEDGADFLALETGSTGTSGGGSSDDAFDNHAAIDGTTTLPHGASPASLAKAFALAALGL--SARRGNXXXXXXXXG-RREERYYKDREEGIFDATANA-LTEEQVAALEARLEEEPCVNVEGCLLVAIHRLPRAGNSTRAVMNTIGAVARGPGGPLGNVDHAALKPALRVLVRGLERG---QTEALWILYLRVFAILPGKGEEALGMAEHAVENYPTSRRVWRLYRSMLLKFRRRSLPDEIHTYRKNLEMLLQVKPLATEGAPMATQTTADSATSQDGIETESGAATAHPQATSVQETAESGAKSDKRDRATVGMVAYLVLERSSMLAEAGYLLQAAANALDALG---EGKVLRGWDAATEDEAGGKSLLRA-PSESVQSPGLGDLPTNESG---KGIGTSGSGGRGVHGRLPEGVSEVLRQAPRDTRCLLWLAALHLLVMGVFPRPVLGLAEGDGGD-------PDCGSPGAGSFLWSKEWLSPESAAGIRLSASAELSDATTKVFMSALQDAGLLPAEDGRGGGWAPPMRVRDALFPSAAEAKAARAGGMAPEPSALAGPSLALALNWLAFCCRKGRGRDNGVRSVALACCRRFQLSRPDDPSMLEHLLVEHDVSRLRSLEDVYREISSAFNEGGVATEAFRSR------SVDL----ARKGDCGSRNGAFSSSSVHHLEALYCFFRFAEVRLRATASKAHVDSSPSTNGLASVASETVNATNVAPAIPAAAEAERDMGSRCD---FLREALVGIWL-----PRRASNDHPGDGTKGMLNRWLLEDDVESLHLALEGAKASLFRWADGFSRDGGDSGXXXXXXXXGASEEQAAMNLTSNARRSGWEDELSAGRQLSTTFLALWVLGGPSEATHTLDHLLSAESFANMPPERRRLAWLQRLEAAIFISSEKA----VAAKDPLKGVKEVVLRALADPRTECRICLTAS--SIRAFVSAD-DRPDNATLADVVASALDESADGGSYEYQLS-----AGGRSGASSSAVSFAYDVLMLYAKHFQEV-RGGIDWSVVAEALGNSGEEASAKEGTLACVRALLFWVNLAGEPEPVDGSVARAG---GPPALRSSARPYAERALARHRYDSGLAGIVAALEASMGRPDRAQRVLEAALGYNGLCSALWEQRIALEAAFGAGSKDRARATSSAAASSKVLLRLRCMSDRGRMECERSDVSTDRSSRHTSVLSARVASHILATVSNASSRQETKSLSLQGSLYLLGKTESLHPPPSRTPRE--------EVPRSVFLLTGLVSLSLASNGLTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKLSGSLRLLRLAGNRFSSPLARSPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHSF-QRVPPSLTDVLPHLEQLILP 1717
            +AMA GG     GD +LTRDA TI +YI LMS EM+ E+      G+D   +      A  RR+  PGLSL+EALD+AE  +ARP R  NLL LAA IRP+                                                      A A   KRRR+D NAI+CPFELNGVCNDDDCRYQH + YLP P +P ++  PI+  AA    A V PAK      S  S PG                      PVP P    AA    R     +  LP IDF    K +A  R +    +G         P  ET   T    A GG A+             G           E+E+A   +D G                             FLAL T     +GG       D   A  GT   P  ASPA+LAKAFALAA G   S  RGN        G  REERYY +  +G     A+A L ++Q++ALEA+L E    +VEG LL+A+H+LPRAG S +AV+NTI  VA G  GP+G+VD AA+K ALR  VR LER    Q E LW+LYLR+FA LPGK ++ALGMAE+A+E +PTSRR+WRLY SML      SLP+++  YR+ +E LL ++P A +        +                                         A V M+ YLVLER S+LAEAGY LQAAA  LD+LG   EG+ L GWDA   D  G ++LLR       +  G G+  T   G    G  T  S   G   RLP GV+  L+ APRD+RC+LWL ALHLLVMGVFPR  L LAE DGG           G   A   LW  EWLSP+S+A +RLSAS +L DAT K FM+AL D GLLP    +G  WAP ++ RDAL  SAAEAKAARAGGMAP+ SAL GP L LALNWLAFC R+GR      R +A ACCRRFQLSRPD P++LEH L+EH VS+ R+L D Y EIS AF+  GVA  A R R      S  L    AR+ D  S N      S   ++A+Y F RF E RL A  S+                SE+ N              + D G+  D    LR+ALVG+W                   +    RWL E+  ES+  ALEGAKASLFRWADG S  G D+                           G   E    RQLST   +LWVLGG S A  +LDH+LSAESF+ +  ER+RLAWLQRLEAAI +S+++      +  D ++GV+EV LRALAD RTE R  L A   S+  FV+A  DRP  AT + V  S       GG     +S     A   + +S+S+ SFA DVL +YA HF+E  RGG+DW V AEALG  G  A+                          G+   A    G  AL+++ARPY E ALA +  D+ L G VAAL A+ G PD AQRVLEAAL  +  C+ LWEQR+ALEA FG+GS +RA AT++AAA S+V+LRLRC    G               +  S L AR A  I   +S+ +SR+E KS SLQ +L          PP S  P          EVPRS+FL+T L SLSLA NGL  XXXXXXXXXXXXXXXXXXXXXXXXXXXX +LSG+LRLLR AGNR  SPL+ +  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  F +R P  L+D LP LE+L LP
Sbjct:   64 LAMAIGGGMVPGGDDLLTRDAGTIAEYIRLMSFEMLGEESQ----GRDRPVERWHQVGASIRRRLVPGLSLTEALDKAEATAARPARLPNLLALAAAIRPVDSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDEPRAEAPGAKRRRVDANAIMCPFELNGVCNDDDCRYQHLDVYLP-PLNPGTSSAPISASAA----ANVQPAK------SSASGPGSTS-------------------PVPGPLAAAAARTDERASALGQHRLPAIDFTGAAKRDAVARARENGRRGVVKPSSSRQPTSETGGVTPTA-AEGGTADQXXXXXXXXXXXXG-----------ELEEADA-VDSGEXX---------------XXXXXXXXXXXFLALPTERAENNGG-------DGGEASSGTAAAPEQASPAALAKAFALAASGALASGGRGNVVRGAGGSGVGREERYYLEGGDGKTQGAASAALPDDQLSALEAKLNEGASCDVEGWLLLAMHQLPRAGGSAKAVLNTISDVACGASGPMGSVDQAAVKSALRTFVRPLERADGAQAEVLWLLYLRLFAFLPGKSDDALGMAEYALEKFPTSRRIWRLYHSMLQTSPGWSLPEDVSCYRRQIEALLLLQPRAADMRASPQDGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEVKMIVYLVLERCSLLAEAGYKLQAAAEVLDSLGALAEGQPLWGWDA--RDGQGRRTLLRTFEGGGHEREGEGNGATRXXGGANAGGSTEASDDNGQ--RLPAGVAAALKHAPRDSRCVLWLTALHLLVMGVFPRHALTLAENDGGGLGGSNDTTAAGGDLAALLLWPTEWLSPKSSAILRLSASPDLQDATLKTFMTALSDVGLLPPPRSQGC-WAPAIKDRDALLSSAAEAKAARAGGMAPDASALEGPPLVLALNWLAFCLRRGRVDARQGRMMAFACCRRFQLSRPDQPALLEHFLLEHAVSKTRTLGDTYHEISRAFDADGVAAGALRERRDGEGKSASLNPAGARRRDEQSVN-LVPPPSGERIQAVYAFLRFVESRLEAARSE----------------SESAN--------------DADRGALEDARRVLRDALVGMWTGVSSXXXXXXXXXXXXXARSESYRWLEEEGGESVRQALEGAKASLFRWADGGS-GGCDA--------------------------PGGNGE----RQLSTIVFSLWVLGGASAAIGSLDHILSAESFSGVSAERKRLAWLQRLEAAIILSTQQRRKQQASGVDAMQGVREVALRALADHRTERRCVLPAEYPSLAHFVAATLDRPP-ATESPVRDS-------GGQPGKSISRDPPFASLATDSSASSSSFACDVLTVYANHFREAKRGGVDWVVAAEALG--GVSAAXXXXXXXXXXXXXXXXXXXXXDHDESGAATAASSVDGASALKANARPYVEMALAMNPADTALCGAVAALWAATGSPDLAQRVLEAALRAHPYCAELWEQRVALEAGFGSGSTERAGATAAAAAGSRVMLRLRCGGKLG--------------GQTPSGLQARTAGRIATAISHPTSRREIKSFSLQAALRA--------PPGSSAPVAAAGAMATIEVPRSIFLMTSLTSLSLAFNGLLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLSGTLRLLRAAGNRLQSPLSATTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEFSERAPAGLSDALPFLEELTLP 1695          
BLAST of mRNA_F-serratus_M_contig1030.351.1 vs. uniprot
Match: A0A397FZD7_9STRA (C3H1-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FZD7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 8.870e-5
Identity = 24/45 (53.33%), Postives = 28/45 (62.22%), Query Frame = 0
Query:  139 QMATARSTKRRRMDPNAILCPFELNGVCNDDDCRYQHAENYLPLP 183
            Q A   +T    +DP  +LCPFELNGVC+DD C YQH   YL  P
Sbjct:  188 QPALLSATYSNHVDPMKVLCPFELNGVCHDDKCEYQHERQYLISP 232          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1030.351.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KFG5_9PHAE3.040e-27143.78C3H1-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A397FZD7_9STRA8.870e-553.33C3H1-type domain-containing protein n=2 Tax=Aphano... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 1610..1633
e-value: 1.7
score: 17.6
coord: 1659..1682
e-value: 0.095
score: 21.8
coord: 1683..1707
e-value: 270.0
score: 1.6
coord: 1587..1609
e-value: 14.0
score: 12.0
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1513..1651
e-value: 1.8E-15
score: 58.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 1652..1717
e-value: 3.7E-9
score: 38.0
IPR019607Putative zinc-finger domainPFAMPF10650zf-C3H1coord: 157..175
e-value: 5.8E-9
score: 35.5
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 1636..1695
e-value: 6.1E-7
score: 29.1
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 1661..1682
score: 7.458
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 1589..1610
score: 5.91
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 1636..1657
score: 5.078
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 1612..1634
score: 6.772
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 1685..1707
score: 4.809
NoneNo IPR availablePANTHERPTHR16083LEUCINE RICH REPEAT CONTAINING PROTEINcoord: 1578..1716
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 1580..1716
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 152..178
score: 10.108

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1030contigF-serratus_M_contig1030:24348..33532 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1030.351.1mRNA_F-serratus_M_contig1030.351.1Fucus serratus malemRNAF-serratus_M_contig1030 24329..33532 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1030.351.1 ID=prot_F-serratus_M_contig1030.351.1|Name=mRNA_F-serratus_M_contig1030.351.1|organism=Fucus serratus male|type=polypeptide|length=1718bp
MAMAAGGPGDGVLTRDASTIEDYILLMSDEMVAEDEAEGMAGQDLTADAP
FRRQPGLSLSEALDRAETASARPPRPANLLDLAALIRPLRLGPRTKAREG
QSASNLKKRNGKEKAQALPTPPGEASGTKRAVHDGEAGQMATARSTKRRR
MDPNAILCPFELNGVCNDDDCRYQHAENYLPLPASPPSTPRPIALQAAPA
PVARVAPAKGPGRNDSGKSKPGGNEAAAATPTTTLAAAAVPVLVPVPVPA
APNGSRGGTTRRWELPVIDFEAGTKDEASRRGKVWRAKGPRPNGEVEFPA
EETEARTKRPRASGGGAESLTVESGERAKPPGSSGSDFGSIGAEVEKAGV
GIDEGSDRDGDGGVGVVGTRRGSATDSEIEDGADFLALETGSTGTSGGGS
SDDAFDNHAAIDGTTTLPHGASPASLAKAFALAALGLSARRGNGGGGGRA
RGRREERYYKDREEGIFDATANALTEEQVAALEARLEEEPCVNVEGCLLV
AIHRLPRAGNSTRAVMNTIGAVARGPGGPLGNVDHAALKPALRVLVRGLE
RGQTEALWILYLRVFAILPGKGEEALGMAEHAVENYPTSRRVWRLYRSML
LKFRRRSLPDEIHTYRKNLEMLLQVKPLATEGAPMATQTTADSATSQDGI
ETESGAATAHPQATSVQETAESGAKSDKRDRATVGMVAYLVLERSSMLAE
AGYLLQAAANALDALGEGKVLRGWDAATEDEAGGKSLLRAPSESVQSPGL
GDLPTNESGKGIGTSGSGGRGVHGRLPEGVSEVLRQAPRDTRCLLWLAAL
HLLVMGVFPRPVLGLAEGDGGDPDCGSPGAGSFLWSKEWLSPESAAGIRL
SASAELSDATTKVFMSALQDAGLLPAEDGRGGGWAPPMRVRDALFPSAAE
AKAARAGGMAPEPSALAGPSLALALNWLAFCCRKGRGRDNGVRSVALACC
RRFQLSRPDDPSMLEHLLVEHDVSRLRSLEDVYREISSAFNEGGVATEAF
RSRSVDLARKGDCGSRNGAFSSSSVHHLEALYCFFRFAEVRLRATASKAH
VDSSPSTNGLASVASETVNATNVAPAIPAAAEAERDMGSRCDFLREALVG
IWLPRRASNDHPGDGTKGMLNRWLLEDDVESLHLALEGAKASLFRWADGF
SRDGGDSGNGGSGDSGGASEEQAAMNLTSNARRSGWEDELSAGRQLSTTF
LALWVLGGPSEATHTLDHLLSAESFANMPPERRRLAWLQRLEAAIFISSE
KAVAAKDPLKGVKEVVLRALADPRTECRICLTASSIRAFVSADDRPDNAT
LADVVASALDESADGGSYEYQLSAGGRSGASSSAVSFAYDVLMLYAKHFQ
EVRGGIDWSVVAEALGNSGEEASAKEGTLACVRALLFWVNLAGEPEPVDG
SVARAGGPPALRSSARPYAERALARHRYDSGLAGIVAALEASMGRPDRAQ
RVLEAALGYNGLCSALWEQRIALEAAFGAGSKDRARATSSAAASSKVLLR
LRCMSDRGRMECERSDVSTDRSSRHTSVLSARVASHILATVSNASSRQET
KSLSLQGSLYLLGKTESLHPPPSRTPREEVPRSVFLLTGLVSLSLASNGL
TELPSAVGRLLSLRSLDASDNALTALPSSLSKLSGSLRLLRLAGNRFSSP
LARSPLGDLVSLRVLDLGNNALSRFPQEVVLSMKELRTLNLTGNHSFQRV
PPSLTDVLPHLEQLILP*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003591Leu-rich_rpt_typical-subtyp
IPR032675LRR_dom_sf
IPR019607Putative_zinc-finger_domain
IPR001611Leu-rich_rpt
IPR000571Znf_CCCH