prot_F-serratus_M_contig1000.119.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1000.119.1
Unique Nameprot_F-serratus_M_contig1000.119.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length353
Homology
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A438FVW1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FVW1_VITVI)

HSP 1 Score: 187 bits (474), Expect = 1.640e-49
Identity = 111/390 (28.46%), Postives = 192/390 (49.23%), Query Frame = 0
Query:   11 CILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY---------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTF--RSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 353
              LNGE+ E VY +Q  GF + D  G  L+ +L +SIYGL+Q+ +   +     +S+  F+  V D C+++K SG     L  YVD++ +   +   + EV++   + F M D  +A+ ++GI+I +D+ +  + ++Q  Y                                             Y S +GSL++   CTR DI  AV    R+ S P   H  A K+++RYL+   +  + Y R SN E++G+ D+ +  G  +  +STSG ++ L+ G + + +  Q +   ST EAE I+        ++L   + GL       R   I+CDN  A+ +A      SRSKH+ I+++ +R+ + ++ +VI+H+S +  ++D LTK
Sbjct:  390 AFLNGELEEEVYMKQPEGFPSSD--GEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYLKVSGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYRRTSNLEVVGYSDS-DFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTK 776          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5JDU8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDU8_9PHAE)

HSP 1 Score: 183 bits (464), Expect = 2.170e-49
Identity = 116/342 (33.92%), Postives = 172/342 (50.29%), Query Frame = 0
Query:   11 CILNGEISEGVYTRQAPGFETKDSQ-GRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAG 309
              LN      VY R APG   K+S  G  ++ +L RS+YGL QSP   + T ++ L    +  T  D CV++  SG+  VILT YVD++ ITG  D  + + +K   ++F MTD  +  RILGI++ +D E+ T++I+Q  Y                                          YQS+  S+++L QCTRFD+  A  Q ++  S P  V++ A K +LRYLR  P L I Y R   F L    D+  G  N +  RST+G ++FL+ G++ +    Q +  QST EAE+ A S  A++ IY+   +    ++TF    I  D+ GAL +AG
Sbjct:  192 AFLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLNESLKVFGWKRTQYDPCVYMYTSGNIIVILTVYVDDILITG-GDQQLVDQKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEYYVNTLLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTRSILYLAQCTRFDLSYAALQLSKACSNPAQVNLTAAKHVLRYLRGNPVLPIVYKRGQ-FWLAASTDSSFGA-NLDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSFSAREAIYISNFMTEFNFKTFGWVPINSDSTGALTVAG 530          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A438GMM1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GMM1_VITVI)

HSP 1 Score: 186 bits (473), Expect = 3.580e-49
Identity = 111/389 (28.53%), Postives = 192/389 (49.36%), Query Frame = 0
Query:   12 ILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY---------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTF--RSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 353
             LNGE+ E VY +Q  GF + D  G  L+ +L +SIYGL+Q+ +   +     +S+  F+  V D C+++K SG     L  YVD++ +   +   + EV++   + F M D  +A+ ++GI+I +D+ +  + ++Q  Y                                             Y S +GSL++   CTR DI  AV    R+ S P   H  A K+++RYL+   +  + Y R SN E++G+ D+ +  G  +  +STSG ++ L+ G + + +  Q +   ST EAE I+        ++L   + GL       R   I+CDN  A+ +A      SRSKH+ I+++ +R+ + ++ +VI+H+S +  ++D LTK
Sbjct:  463 FLNGELEEEVYMKQPEGFPSSD--GEQLVCKLKKSIYGLKQASRQWYLKFHNIISSFGFVENVMDQCIYLKVSGSKVCFLVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKGILGLSQETYINKVLERFRMKNCSPSVSPIVKGDRFNLDQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPGIDHWKAAKKVMRYLQGTKDYKLMYRRTSNLEVVGYSDS-DFAGCVDSRKSTSGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEATSHGVWLKSFISGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHIDIKYLAIRERVKEKKVVIEHISTELMIADPLTK 848          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5JG39_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG39_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 3.880e-49
Identity = 127/386 (32.90%), Postives = 181/386 (46.89%), Query Frame = 0
Query:   11 CILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGW-RTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 353
              L  +I E VY  Q PGFE K   G  L+M L +S+Y L QSP     T D  L +I F+P   D CV+      S + LT  VD+L + G N +A++                 A+ I G+EI +D+ER T+SI++  Y                                          YQ I+G LI+L Q  R+DI  A SQ AR M+KP+  HMGA KR  RYL       I Y R   F+L  F D+ N   NP+  +STS  +  L +  + F + +Q +  QST E EL+A +   K+ ++   IL  LG+ +      ++ DN   L   G  SYSS +KH+A+RF  +R+ + +  + I +V      +DI TK
Sbjct:  334 AFLYADIQEDVYVEQPPGFEVKGENGEDLVMLLQKSLYWLAQSPGNWFHTIDPFLISIGFVPLKPDPCVYFYDHDGSQMYLTLSVDDLLLAGNNSDALSI----------------ASLISGMEIKRDRERGTLSISREAYSKSILDRFGMSACKPTSTPGLGPGPSNVQPEETLLNQEETRRYQGIVGCLIYLSQILRYDIMYATSQLARPMAKPSKNHMGAAKRTFRYLAGTTYFKIPYKRGG-FKLTAFTDS-NWGNNPDNGKSTSSHLTMLCDAPMAFKSGLQSLTTQSTMEVELVAAALAIKEAVFCSNILTELGFGKELAQVPLYGDNTATLHSLGNRSYSSTTKHIALRFFFIRELVSEGRIAIHYVPADSNPADIGTK 701          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A438JMN5_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=5 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JMN5_VITVI)

HSP 1 Score: 181 bits (460), Expect = 4.340e-49
Identity = 104/390 (26.67%), Postives = 190/390 (48.72%), Query Frame = 0
Query:   11 CILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY---------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGW--RTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 353
              LNG + E +Y  Q  GF  K ++   L+ +L +SIYGL+Q+ +   +  +  +++  F   + D C+++K SG  ++ L  YVD++ +   +   + E ++   + F M D  +A  ++ IEIF+D+ R  + ++Q  Y                                             Y S +GSL++   CTR DI  AV    R+ S P   H  A K+++RYL+   +  +TY R+   E++G+ D+  G G  +  +STSG ++ L+ G + + +  Q I   ST EAE +A    +   ++L   + GLG      +  RI+CDN  A+  +  G +SS SKH+ ++++ +++ +  + + I+++     ++D LTK
Sbjct:  109 AFLNGNLDEDIYMEQPEGFAKKGNE--HLVCKLKKSIYGLKQASRQWYIKFNNTITSFGFKENILDQCIYLKVSGSKFIFLILYVDDILLASSDLGLLRETKEYLSKNFHMVDMGEANYVISIEIFRDRSRGVLGLSQKGYIDRVLERFNMQSCSSGIAPILKGDKLSKMQCPRNNIEREQMKKIPYASAVGSLMYAQTCTRPDISFAVGMLGRYQSDPGFEHWKAAKKVMRYLQGTKDYMLTYKRSEQLEVVGYSDSDYG-GCLDSLKSTSGFVFMLANGAISWKSEKQSITASSTMEAEFVACFEASSHALWLRNFISGLGVVDSIAKPLRIYCDNTAAVFFSKNGKFSSGSKHMDLKYLVVKERVQKQQVSIENIRTTLMVADPLTK 495          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A438FVW1_VITVI1.640e-4928.46Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JDU8_9PHAE2.170e-4933.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438GMM1_VITVI3.580e-4928.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JG39_9PHAE3.880e-4932.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A438JMN5_VITVI4.340e-4926.67Retrovirus-related Pol polyprotein from transposon... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 12..156
e-value: 4.7E-25
score: 88.6
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 78..338
NoneNo IPR availablePANTHERPTHR11439:SF275coord: 78..338
NoneNo IPR availableSUPERFAMILY56672DNA/RNA polymerasescoord: 34..324

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1000contigF-serratus_M_contig1000:90726..91910 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1000.119.1mRNA_F-serratus_M_contig1000.119.1Fucus serratus malemRNAF-serratus_M_contig1000 90613..91910 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1000.119.1 ID=prot_F-serratus_M_contig1000.119.1|Name=mRNA_F-serratus_M_contig1000.119.1|organism=Fucus serratus male|type=polypeptide|length=353bp
MERGRYGFFDCILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGL
RQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFI
TGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQAL
YYQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLR
DKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHF
STSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCD
NKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDI
LTK
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like