mRNA_F-serratus_M_contig1000.119.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1000.119.1
Unique NamemRNA_F-serratus_M_contig1000.119.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 233 bits (594), Expect = 1.850e-68
Identity = 136/385 (35.32%), Postives = 207/385 (53.77%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQ-GRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             LN      VY R APG   K+S  G  ++ +L RS+YGL QSP   + T D+ L+   +  T SD CV+V  SG+  VILT YVD++ ITG +   + + +K   ++F MTD  +  RILGI++ +D E+ T++I+Q  Y                                          YQS+ GS+++L QCT+FD+  A  Q ++  S P  V+M A K +LRYLR  P L I Y R   F L  F D+  G  NP+  RST+G ++FL+ G++ +    Q +  QST EAE+ A S  A++ +Y+   +  L ++TF S  I  D+ GAL +AG   +S R+KH+A+R+  +R+ ++   + + H  ++ QL+DI TK
Sbjct:   92 FLNALCDRYVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATK 474          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 233 bits (595), Expect = 1.730e-66
Identity = 136/385 (35.32%), Postives = 201/385 (52.21%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKD-SQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             LN      VY R APG E +D + G  ++ +L +S+YGL QSP   +   +  L    +  T SD CV++  SGD   IL  YVD++ ITG N   ++  +K  M+ F MTD  +  R++GIE+ +D E  T++I+Q  Y                                          +Q+I GSL++L QCTR+D+  AV Q  R  + P  VHM A K +LRYLR  P+L I Y +   F L  F D+  G  NP+  RST+G ++FL  G++ +    Q +A Q+T EAEL A S  A++ +Y+   +  +G++TFRS  I  D+ GAL +A    +SSR+KH+A+RF  LR+      + + H  +   L+DI TK
Sbjct:  333 FLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGK-FRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATK 715          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 1.950e-66
Identity = 136/385 (35.32%), Postives = 207/385 (53.77%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQ-GRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             LN      VY R APG   K+S  G  ++ +L RS+YGL QS    + T D+ L+ + +  T SD CV+V  SG+  VILT YVD++ ITG +   + + +K   ++F MTD  +  RILGI++ +D E+ T++I+Q  Y                                          YQS+ GS+++L QCTRFD+  A  Q ++  S P  V+M A K +LRYLR  P L I Y R   F L  F D+  G  NP+  RST+G ++FL+ G++ +    Q +  QST EAE+ A S  A++ +Y+   +  L ++TF S  I  D+ GAL +AG   +S R+KH+A+R+  +R+ ++   + + H  ++ QL+DI TK
Sbjct:  300 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSHALWNDTLDESLTVLGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATK 682          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 234 bits (596), Expect = 6.920e-66
Identity = 136/385 (35.32%), Postives = 206/385 (53.51%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQ-GRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             LN      VY R APG   K+S  G  ++ +L RS+YGL QSP   + T D+ L+   +  T SD CV+V  SG+  VILT YVD++ ITG +   + + +K   ++F MTD  +  RILGI++ +D E+ T++I+Q  Y                                          YQS+ GS+++L QCTRFD+  A  Q ++  S P  V+M A K +LRYLR  P L I Y R   F L  F D+  G  NP+  RST+G ++FL+ G++ +    Q +  QST EAE+ A S  A++ +Y+   +  L ++TF S  I  D+ GAL +AG   +S R+KH+ +R+  +R+ ++   + + H  ++ QL+DI TK
Sbjct:  456 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATK 838          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 2.080e-61
Identity = 130/361 (36.01%), Postives = 191/361 (52.91%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKD-SQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRD 1100
             LN      VY R APG E +D + G  ++ +L +S+YGL QSP   +   +  L    +  T SD CV++  SGD   IL  YVD++ ITG N   ++  +K  M+ F MTD  +  R++GIE+ +D E  T++I+Q  Y                                          +Q+I GSL++L QCTR+D+  AV Q  R  + P  VHM A K +LRYLR  P+L I Y +   F L  F D+  G  NP+  RST+G ++FL  G++ +    Q +A Q+T EAEL A S  A++ +Y+   +  +G++TFRS  I  D+ GAL +A    +SSR+KH+A+RF  LR+
Sbjct: 1112 FLNAYTDRDVYVRPAPGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQ-FRLSCFTDSSFGA-NPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRN 1470          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5JJR8_9PHAE (Integrase catalytic domain-containing protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJR8_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 1.100e-60
Identity = 134/392 (34.18%), Postives = 205/392 (52.30%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQGRS-LIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNS------NFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQE-IYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             LN      VY R APG   K+S     ++ +L RS+YGL QSP   + T D+ L+   +  T SD CV+V  SG+S VI + YVD++ ITG +   + + +K   ++F MTD  +  RILGI++ +D E+ T++I+Q  Y                                          YQS+ GS+++L QCTRFD+  A  Q ++  S P  V+M A K +LRYLR  P L I Y R           L  F D+  G  NP+  RST+G ++FL+ G++ +    Q +  QST EAE+ A S  A++  +Y+   +  L ++TF S  I  D+ GAL +AG   +S R+KH+A+R+  +R+ ++   + + H  ++ QL+DI TK
Sbjct:  679 FLNALCDRDVYVRPAPGTSAKNSATEEPMVYKLERSLYGLLQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTSGNSIVISSVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVPRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKREQIRLAAEQIRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATK 1069          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 3.190e-60
Identity = 127/386 (32.90%), Postives = 203/386 (52.59%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQ-GRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGW-RTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             L  +I E V+  Q PGFE KD + G  ++M+L++S+YGL QSP     T D  +  I F+   SD CV++     + + LT YVD+L + G + +A++ V+    ++F MTD  +A+ +LG+EI +D+E +T++I+Q  Y                                          YQ I+GSL+++ Q  R+DI  A  Q AR M+KP+ VHM A K  LRYL    +  ITY +   F+L  F D+ N   NP+  +STS  +  L+   + F + +Q +   ST EAEL+A +   K+ ++   ++  LG+ + F    ++CDN   L   G  S+SSR+KH+A+RF  +R+ + +  + I +   +  L+DI TK
Sbjct:   35 FLYADIQEEVFVEQPPGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGG-FKLATFSDS-NWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTK 418          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5KDK0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDK0_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 4.990e-60
Identity = 128/369 (34.69%), Postives = 197/369 (53.39%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQ-GRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY--------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             LN      VY R APG   K+S  G  ++ +L RS+YGL Q  +                 T SD CV+V  SG+  VILT YVD++ ITG +   + + +K   ++F MTD  +  RILGI++ +D E+ T++I+Q  Y                          YQS+ GS++ L QCTRFD+  A  Q ++  S P  V+M A K  +RYLR  P L I Y R   F L  F D+  G  NP+  RST+G ++FL+ G++ +    Q +  QST EAE+ A S  A++ +Y+   +  L ++TF S  I  D+ GAL +AG  ++S R+K +A+R+  +R+ ++   + + H  ++ QL+D +T+
Sbjct:   92 FLNALCDRDVYVRPAPGTSAKNSATGEPMVYKLERSLYGLSQWKR-----------------TQSDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPDQILGPTDKKIYQSMTGSILNLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHDVRYLRGNPVLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNATHSQRTKLVALRYFFIRELVLLGQITLHHRPSEHQLADXMTE 441          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 1.010e-59
Identity = 123/357 (34.45%), Postives = 192/357 (53.78%), Query Frame = 3
Query:  228 LIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
            ++ +L RS+YGL QSP   + T D+ L+   +  T SD CV+V  +G+  VILT YVD++ ITG +   + + +K   ++F MTD  +  RILGI + +D E+ T++I+Q  Y                                          YQS+ GS+++L QCTRFD+  A  Q ++  S P  V+M A K +LRYLR  P L I Y R   F L  F D+  G  NP+  RST+G ++FL+ G++ +    Q +  QST EAE+ A S  A++ +Y+   +  L ++TF S  I  D+ GAL +AG   +S R+ ++A+R   +R+ ++   + + H  ++ QL+DI TK
Sbjct:    1 MVYKLERSLYGLSQSPALWNDTLDESLTVFGWKRTQSDPCVYVYTTGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQ-FRLAAFTDSSFGA-NPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRT-NVALRCFFIRELVLRGQITLHHRPSEHQLADIATK 354          
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 3.320e-58
Identity = 128/385 (33.25%), Postives = 202/385 (52.47%), Query Frame = 3
Query:  147 ILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGLRQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFITGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQALY------------------------------------------YQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLRDKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHFSTSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGW-RTFRSARIFCDNKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDILTK 1172
             L  +I E V+  Q PGFE KD  G  ++M+L++S+YGL QSP     T D  L  I F+   SD CV++     + + LT YVD+L + G + +A++ V+    ++F MTD  +A+ +LG+EI +D+E +T++I+Q  Y                                          YQ I+GSL+++ Q  R+DI  A  Q AR M+KP+ VHM A K  LRYL    +  ITY +   F+L  F D+ N   NP+  +STS  +  L+   + F + +Q +   ST EAEL+A +    + ++   ++  LG+ + F    ++CDN   L   G  S+SSR+KH+A+RF  +R+ + +  + I +V  +  L+DI TK
Sbjct: 1265 FLYADIQEEVFVEQPPGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGG-FKLATFSDS-NWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTK 1647          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1000.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KQD0_9PHAE1.850e-6835.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE1.730e-6635.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE1.950e-6635.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE6.920e-6635.32Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KHG5_9PHAE2.080e-6136.01Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5JJR8_9PHAE1.100e-6034.18Integrase catalytic domain-containing protein n=11... [more]
A0A6H5L5U2_9PHAE3.190e-6032.90Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KDK0_9PHAE4.990e-6034.69Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KUJ3_9PHAE1.010e-5934.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KJH6_9PHAE3.320e-5833.25Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1000contigF-serratus_M_contig1000:90613..91910 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score195.3
Seed ortholog evalue4.9e-47
Seed eggNOG ortholog15368.BRADI1G43020.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size1172
Cds size1059
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1000.119.1prot_F-serratus_M_contig1000.119.1Fucus serratus malepolypeptideF-serratus_M_contig1000 90726..91910 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.2597022-UTR-F-serratus_M_contig1000:90612..907251622928791.2597022-UTR-F-serratus_M_contig1000:90612..90725Fucus serratus maleUTRF-serratus_M_contig1000 90613..90725 +
1690962573.4493558-UTR-F-serratus_M_contig1000:90612..907251690962573.4493558-UTR-F-serratus_M_contig1000:90612..90725Fucus serratus maleUTRF-serratus_M_contig1000 90613..90725 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928791.2723699-CDS-F-serratus_M_contig1000:90725..911781622928791.2723699-CDS-F-serratus_M_contig1000:90725..91178Fucus serratus maleCDSF-serratus_M_contig1000 90726..91178 +
1690962573.4594686-CDS-F-serratus_M_contig1000:90725..911781690962573.4594686-CDS-F-serratus_M_contig1000:90725..91178Fucus serratus maleCDSF-serratus_M_contig1000 90726..91178 +
1622928791.2846794-CDS-F-serratus_M_contig1000:91304..919101622928791.2846794-CDS-F-serratus_M_contig1000:91304..91910Fucus serratus maleCDSF-serratus_M_contig1000 91305..91910 +
1690962573.4688044-CDS-F-serratus_M_contig1000:91304..919101690962573.4688044-CDS-F-serratus_M_contig1000:91304..91910Fucus serratus maleCDSF-serratus_M_contig1000 91305..91910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1000.119.1

>prot_F-serratus_M_contig1000.119.1 ID=prot_F-serratus_M_contig1000.119.1|Name=mRNA_F-serratus_M_contig1000.119.1|organism=Fucus serratus male|type=polypeptide|length=353bp
MERGRYGFFDCILNGEISEGVYTRQAPGFETKDSQGRSLIMQLSRSIYGL
RQSPKACSVTTDKDLSTICFLPTVSDACVHVKGSGDSYVILTSYVDNLFI
TGPNDNAMAEVRKVFMEKFTMTDFKDATRILGIEIFQDKERSTISITQAL
YYQSIMGSLIFLCQCTRFDICIAVSQEARFMSKPTPVHMGAVKRILRYLR
DKPNLHITYSRNSNFELIGFCDALNGTGNPEMARSTSGSMYFLSEGIVHF
STSVQKIAVQSTTEAELIARSSCAKQEIYLCGILGGLGWRTFRSARIFCD
NKGALLLAGQGSYSSRSKHLAIRFMGLRDWIIDETLVIDHVSNKGQLSDI
LTK
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mRNA from alignment at F-serratus_M_contig1000:90613..91910+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1000.119.1 ID=mRNA_F-serratus_M_contig1000.119.1|Name=mRNA_F-serratus_M_contig1000.119.1|organism=Fucus serratus male|type=mRNA|length=1298bp|location=Sequence derived from alignment at F-serratus_M_contig1000:90613..91910+ (Fucus serratus male)
GTCGTCGCAAAGGGGCGGAGTCAGCGGCACGGCGTCGACTGTGGGAGAAC CTTAGTGCCGGTCTGGCGTATCGAAGGTCAACGGCTCCTACTCGCCATCG CTGCAGCTAACGTATGGAGCGTGGCCGCTATGGATTTTTCGACTGCATTC TCAACGGGGAGATTTCCGAAGGAGTCTACACCCGGCAAGCCCCGGGGTTT GAGACCAAGGACTCTCAGGGGCGATCGCTCATTATGCAACTCTCCAGATC GATTTACGGACTACGGCAGTCGCCAAAAGCGTGTAGCGTCACCACCGACA AAGACCTATCAACCATCTGTTTCCTGCCGACGGTTAGCGATGCGTGTGTG CACGTCAAGGGCAGCGGGGACAGCTACGTGATACTCACGTCGTACGTGGA CAATCTGTTTATCACCGGACCCAACGACAACGCCATGGCCGAAGTGCGTA AGGTGTTCATGGAAAAGTTCACCATGACGGACTTTAAGGACGCAACTCGA ATCTTGGGGATCGAAATCTTCCAGGACAAGGAGCGCAGCACCATCAGCAT CACTCAGGCTCTTTACGTTTTATCGATACTGCATAAGTAAGGCATGGCCG ACTGAAATCTCGTGCGCACACCTGGTATTGGCAATGAGTTGACCGCGGAA CCTGAAGGCAGCGTTCCGCTCAAGAAGGAGGACACCATCGAGTACCAGAG CATCATGGGATCCCTCATCTTTTTGTGCCAGTGTACGCGTTTTGACATAT GTATTGCGGTGTCACAGGAGGCACGATTCATGAGCAAGCCAACACCCGTC CACATGGGGGCCGTCAAGCGCATCTTGCGCTATCTCCGCGACAAGCCCAA TCTCCATATTACCTACAGTCGCAACAGCAATTTCGAGCTCATTGGCTTCT GTGACGCTTTAAACGGCACCGGCAATCCGGAGATGGCAAGGTCTACATCA GGGAGCATGTACTTTCTTTCTGAGGGAATCGTCCACTTTAGCACAAGCGT TCAAAAGATAGCGGTGCAGTCCACAACCGAGGCGGAGCTCATCGCCAGGA GCTCCTGCGCAAAGCAAGAGATTTACTTGTGCGGAATCCTTGGAGGGCTA GGATGGAGAACCTTCCGCAGTGCCCGCATCTTCTGCGATAACAAGGGGGC TTTGCTCCTAGCGGGGCAGGGAAGCTACAGCAGCCGAAGCAAACATCTTG CGATCAGGTTCATGGGGCTGCGCGACTGGATCATCGACGAGACGCTCGTC ATCGACCACGTCTCCAATAAGGGTCAGCTAAGCGACATTCTCACCAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1000:90613..91910+

>mRNA_F-serratus_M_contig1000.119.1 ID=mRNA_F-serratus_M_contig1000.119.1|Name=mRNA_F-serratus_M_contig1000.119.1|organism=Fucus serratus male|type=CDS|length=2118bp|location=Sequence derived from alignment at F-serratus_M_contig1000:90613..91910+ (Fucus serratus male)
ATGGAGCGTGGCCGCTATGGATTTTTCGACTGCATTCTCAACGGGGAGAT
TTCCGAAGGAGTCTACACCCGGCAAGCCCCGGGGTTTGAGACCAAGGACT
CTCAGGGGCGATCGCTCATTATGCAACTCTCCAGATCGATTTACGGACTA
CGGCAGTCGCCAAAAGCGTGTAGCGTCACCACCGACAAAGACCTATCAAC
CATCTGTTTCCTGCCGACGGTTAGCGATGCGTGTGTGCACGTCAAGGGCA
GCGGGGACAGCTACGTGATACTCACGTCGTACGTGGACAATCTGTTTATC
ACCGGACCCAACGACAACGCCATGGCCGAAGTGCGTAAGGTGTTCATGGA
AAAGTTCACCATGACGGACTTTAAGGACGCAACTCGAATCTTGGGGATCG
AAATCTTCCAGGACAAGGAGCGCAGCACCATCAGCATCACTCAGGCTCTT
TACATGGAGCGTGGCCGCTATGGATTTTTCGACTGCATTCTCAACGGGGA
GATTTCCGAAGGAGTCTACACCCGGCAAGCCCCGGGGTTTGAGACCAAGG
ACTCTCAGGGGCGATCGCTCATTATGCAACTCTCCAGATCGATTTACGGA
CTACGGCAGTCGCCAAAAGCGTGTAGCGTCACCACCGACAAAGACCTATC
AACCATCTGTTTCCTGCCGACGGTTAGCGATGCGTGTGTGCACGTCAAGG
GCAGCGGGGACAGCTACGTGATACTCACGTCGTACGTGGACAATCTGTTT
ATCACCGGACCCAACGACAACGCCATGGCCGAAGTGCGTAAGGTGTTCAT
GGAAAAGTTCACCATGACGGACTTTAAGGACGCAACTCGAATCTTGGGGA
TCGAAATCTTCCAGGACAAGGAGCGCAGCACCATCAGCATCACTCAGGCT
CTTTACTACCAGAGCATCATGGGATCCCTCATCTTTTTGTGCCAGTGTAC
GCGTTTTGACATATGTATTGCGGTGTCACAGGAGGCACGATTCATGAGCA
AGCCAACACCCGTCCACATGGGGGCCGTCAAGCGCATCTTGCGCTATCTC
CGCGACAAGCCCAATCTCCATATTACCTACAGTCGCAACAGCAATTTCGA
GCTCATTGGCTTCTGTGACGCTTTAAACGGCACCGGCAATCCGGAGATGG
CAAGGTCTACATCAGGGAGCATGTACTTTCTTTCTGAGGGAATCGTCCAC
TTTAGCACAAGCGTTCAAAAGATAGCGGTGCAGTCCACAACCGAGGCGGA
GCTCATCGCCAGGAGCTCCTGCGCAAAGCAAGAGATTTACTTGTGCGGAA
TCCTTGGAGGGCTAGGATGGAGAACCTTCCGCAGTGCCCGCATCTTCTGC
GATAACAAGGGGGCTTTGCTCCTAGCGGGGCAGGGAAGCTACAGCAGCCG
AAGCAAACATCTTGCGATCAGGTTCATGGGGCTGCGCGACTGGATCATCG
ACGAGACGCTCGTCATCGACCACGTCTCCAATAAGGGTCAGCTAAGCGAC
ATTCTCACCAAGTACCAGAGCATCATGGGATCCCTCATCTTTTTGTGCCA
GTGTACGCGTTTTGACATATGTATTGCGGTGTCACAGGAGGCACGATTCA
TGAGCAAGCCAACACCCGTCCACATGGGGGCCGTCAAGCGCATCTTGCGC
TATCTCCGCGACAAGCCCAATCTCCATATTACCTACAGTCGCAACAGCAA
TTTCGAGCTCATTGGCTTCTGTGACGCTTTAAACGGCACCGGCAATCCGG
AGATGGCAAGGTCTACATCAGGGAGCATGTACTTTCTTTCTGAGGGAATC
GTCCACTTTAGCACAAGCGTTCAAAAGATAGCGGTGCAGTCCACAACCGA
GGCGGAGCTCATCGCCAGGAGCTCCTGCGCAAAGCAAGAGATTTACTTGT
GCGGAATCCTTGGAGGGCTAGGATGGAGAACCTTCCGCAGTGCCCGCATC
TTCTGCGATAACAAGGGGGCTTTGCTCCTAGCGGGGCAGGGAAGCTACAG
CAGCCGAAGCAAACATCTTGCGATCAGGTTCATGGGGCTGCGCGACTGGA
TCATCGACGAGACGCTCGTCATCGACCACGTCTCCAATAAGGGTCAGCTA
AGCGACATTCTCACCAAG
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