prot_F-serratus_M_contig1.15.1 (polypeptide) Fucus serratus male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_F-serratus_M_contig1.15.1
Unique Nameprot_F-serratus_M_contig1.15.1
Typepolypeptide
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Sequence length570
Homology
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BLAST of mRNA_F-serratus_M_contig1.15.1 vs. uniprot
Match: D7FY23_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY23_ECTSI)

HSP 1 Score: 177 bits (450), Expect = 7.720e-44
Identity = 106/253 (41.90%), Postives = 139/253 (54.94%), Query Frame = 0 
Query:    1 CDKGFHPQCLDPPKARRAREGWVCGGCL--AKASIEVPCAECEKPADEKCALCSACSNVYHPQCLDPPLVNRPRGSSQSG-RAKLTWVCFHCECALPVVVPAGEDAPDKMAALEWSKGF---RPPSEEKARTFWQEEHRRVAEEYAAXXXKEXKDRKDIHDEAGGGAQNIQEPTVSTVVGHQAGLDENIRSALGSVDAALQKPLEERPDGQVLQGMHLALVSLTQANAQLTQMVVTLEMEIGDLKTQLESARG 247
            CD+GFH +CLD  K++     WVC  C    K+  E  C+EC   A  KCALCSAC   +HPQCL+PPL +RP GS+      K TWVCFHCECA+PVVVPAGED PD MAAL+WS G    +P  E K RTFW+ EH R A  +     +    R+ + +E     + I E   +     Q G+   +         AL +   +RPDG  L  MH A+ +L QAN  L QM+   + ++  L+ Q+ S  G
Sbjct:  385 CDRGFHTRCLDKKKSKDVVH-WVCQECFDKTKSVYESICSECGLAAGRKCALCSACGGAFHPQCLEPPLQHRPPGSTPGALHGKNTWVCFHCECAIPVVVPAGEDDPDAMAALKWSAGSGFGKPAFEGKLRTFWEAEHARAARAHEESMRRR---RERLEEE-----KKIAEKDAAYEAAVQTGI---VVPTKDPPTDALARATLKRPDGSALLLMHEAIGNLVQANGALCQMIAWEKAKVKALREQVRSLGG 625
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BLAST of mRNA_F-serratus_M_contig1.15.1 vs. uniprot
Match: A0A6H5JE71_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE71_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.220e-22
Identity = 64/143 (44.76%), Postives = 78/143 (54.55%), Query Frame = 0 
Query:    1 CDKGFHPQCLDPPKARRAREGWVCGGCLAKASIEVPCAECEKPADEKCALCSACSNVYHPQCLDPPLVNRPRGSSQSG-RAKLTWVCFHCECALPVVVPAGEDAPDKMAALEWS--KGFRPPS-EEKARTFWQEEHRRVAEEY 139
            CD+GFH +CL+  K++     WVC  C  K                          VY  +CL+P L +RP GS+      K TWVCFHCECA+PVVVPAGED PD MAALEWS   GF  P+ + K R FW+ EH R A E+
Sbjct:  435 CDRGFHTRCLNKKKSKDVVH-WVCQECFDKTKA-----------------------VY--ECLEPALQHRPPGSTPGALHGKNTWVCFHCECAIPVVVPAGEDDPDAMAALEWSAGSGFGAPAFQGKLRAFWEAEHARAAREH 551
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1.15.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FY23_ECTSI7.720e-4441.90PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JE71_9PHAE1.220e-2244.76PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Fucus serratus MALE
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 221..248
NoneNo IPR availableCOILSCoilCoilcoord: 136..156
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 36..90
e-value: 5.9E-5
score: 32.5
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 32..91
e-value: 3.4E-7
score: 32.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 1..31
e-value: 4.0E-5
score: 25.2
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 1..36
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 34..93

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1contigF-serratus_M_contig1:405732..409520 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Fucus serratus MALE2022-09-29
Diamond blastp: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-16
OGS1.0 of Fucus serratus male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1.15.1mRNA_F-serratus_M_contig1.15.1Fucus serratus malemRNAF-serratus_M_contig1 405732..409522 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_F-serratus_M_contig1.15.1 ID=prot_F-serratus_M_contig1.15.1|Name=mRNA_F-serratus_M_contig1.15.1|organism=Fucus serratus male|type=polypeptide|length=570bp
CDKGFHPQCLDPPKARRAREGWVCGGCLAKASIEVPCAECEKPADEKCAL
CSACSNVYHPQCLDPPLVNRPRGSSQSGRAKLTWVCFHCECALPVVVPAG
EDAPDKMAALEWSKGFRPPSEEKARTFWQEEHRRVAEEYAAAAEKEEKDR
KDIHDEAGGGAQNIQEPTVSTVVGHQAGLDENIRSALGSVDAALQKPLEE
RPDGQVLQGMHLALVSLTQANAQLTQMVVTLEMEIGDLKTQLESARGQGK
SVPPPRASIPVKKQVKARTPQVMKDQNKVPANAVRGRPAIPGDENPTARD
TGGLGVVALTSASASAKVKKVVTAKVVPPKGSPSKASPEALATGKNKDKG
RDHQPHTAAVSGEVNDQRRKTAVEDDDEESSEDEDDGGRRNGVSEATSSS
DETEDSVGTSSSSVSAPANAKTAVPETAPHATPKAAAALKTAAASKAASK
VAAKATTKLDGKSIPKTEQKEDPKPPARELPTVAGKAKPFQPRTSLHDEE
SSDDESTSEEEEGGRNQSKGQAVSERRARDLEERGRRQESPAPAAAQTRA
MDKWQEEDDSTSEEESEGHR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR011011Znf_FYVE_PHD