mRNA_F-serratus_M_contig998.21260.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE) HSP 1 Score: 111 bits (277), Expect = 2.240e-25 Identity = 85/190 (44.74%), Postives = 104/190 (54.74%), Query Frame = -3 Query: 7 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLLLGASPAPLPTMEDSPDVEENERYEESGMFGDDINDHTSEAEQVEADEREKEDTSGDGNDDTLEKDDKMQEEPNPIPKPESRRPIHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAVDGIGGHSHGPHHLRPGHPPGMG 576 LR+ GV SMTA LEK M LL+L P RLVV+GLAP +LL G S A + + SG G ++ ++ QV D SGD D + K + + E N S+ P+HAALV+ GI LRPRET+ LLRAL V PHR V+LGLV + LR GG GP HLR GHP G G Sbjct: 34 LREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSAADAHA----------DTTDSSGSSGSEVEPEQADDNQVSDDXXXXXXXSGDTEHDNIRKHNSLGFETNK----RSKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELRRSR-PGGRRGGPSHLRHGHPGGPG 208
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 7.140e-14 Identity = 76/191 (39.79%), Postives = 93/191 (48.69%), Query Frame = -3 Query: 73 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLLLGASPAPLPTMEDSP----DVEENERYEESGMFGDDINDHTSEAEQVEADERE--------KED-----------TSGDGNDDTLEKDDKMQEEPNPIPKPESRRPIHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 576 LR+ GV SMTAP L K + L+L PRRLV +GLAP+ LL M+ S D E NE ES G E VE D++E K D TS ND+ E DD E + IH A ++GGI+LRPRE + LL ALDV P R +LGLV+GK LRA+ Sbjct: 115 LREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKVTLGDGENNEDLAESVAAG-------MELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDAAPEVKKNL--------IHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAM 290
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 1.140e-13 Identity = 74/182 (40.66%), Postives = 95/182 (52.20%), Query Frame = -3 Query: 73 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLL--LGASPAPLPTMEDSP--DVEENERYEESGMFGDDINDHTSEAEQVEADERE---------KEDTSGDGNDDTLEKDDKMQEEPNPIPKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 576 LR+ GV SMT P L K + L+L P+RLV +GLAP+ LL + A A + P D + NE ES G E +E D++E DTS ND+ EE N PE ++ IH A ++GGI+LRPRE + LL ALDV P R +LGLVDGK LRA+ Sbjct: 131 LREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGKNNEDLAESVAAG-------MELMSLEDDKKEWNDGFVSVEPADTSSPDNDN---------EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAM 296
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 4.410e-13 Identity = 74/183 (40.44%), Postives = 94/183 (51.37%), Query Frame = -3 Query: 73 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLL--LGASPAPLPTMEDSP--DVEENERYEESGMFGDDINDHTSEAEQVEADEREKEDTSGDGNDDT----------LEKDDKMQEEPNPIPKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 576 LR+ GV SMTAP L K + L+L P+RLV +GLAP+ LL + A A + P D + NE ES G E VE D++E D D D EE N PE+++ IH A ++GGI+LRPRE + LL ALDV P R +LGLVDGK LRA+ Sbjct: 133 LREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAG-------MELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAM 308
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 1.000e-12 Identity = 70/176 (39.77%), Postives = 92/176 (52.27%), Query Frame = -3 Query: 73 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLLLG-----ASPAPLPTME--DSPDVEENERYEESGMFGDDINDHTSEAEQVEADEREKEDTSGDGNDDTLEKDDKMQEEPNPIPKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 576 LR+ GV SMT P L K + L+L P+RLV +GLAP+ LL A+ A L + D + E+ + +GM E VE D++E D D EE N PE ++ IH A ++GGI+LRPRE + LL ALDV P R +LGLVDGK LRA+ Sbjct: 142 LREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGKNNEDLAEWVAAGM----------EFMSVEDDKKEWNDGFVSVEPAETSSSDNGNEEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAM 307
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 1.090e-12 Identity = 74/182 (40.66%), Postives = 95/182 (52.20%), Query Frame = -3 Query: 73 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLL--LGASPAPLPTMEDSP--DVEENERYEESGMFGDDINDHTSEAEQVEADERE---------KEDTSGDGNDDTLEKDDKMQEEPNPIPKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 576 LR+ GV SMT L K + L+L P+RLV +GLAP+ LL + A A + P D + NE ES G E VE D++E DTS GND+ EE N PE ++ IH A ++GGI+LRPRE + LL ALDV P R +LGLV+GK LRA+ Sbjct: 115 LREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAG-------MELMSVEDDKKEWNDGFVSVEPADTSSPGNDN---------EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAM 280
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: A0A6H5L2C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C8_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 1.150e-7 Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = -3 Query: 79 SRRPIHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALR 219 S+ PIHA V+ G++LRPRET+ LLRAL V PHR V+LGLV + R Sbjct: 100 SKHPIHAVFVAAGVQLRPRETRPLLRALGVGPHRLVKLGLVQREEAR 146 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig998.21260.1 >prot_F-serratus_M_contig998.21260.1 ID=prot_F-serratus_M_contig998.21260.1|Name=mRNA_F-serratus_M_contig998.21260.1|organism=Fucus serratus male|type=polypeptide|length=141bp MASNAVHGAKGLAVHEPEPYEAVGAHIESAKQGLGLAGTQFDAAAHQSRVback to top mRNA from alignment at F-serratus_M_contig998:244458..245035+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig998.21260.1 ID=mRNA_F-serratus_M_contig998.21260.1|Name=mRNA_F-serratus_M_contig998.21260.1|organism=Fucus serratus male|type=mRNA|length=578bp|location=Sequence derived from alignment at F-serratus_M_contig998:244458..245035+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig998:244458..245035+ >mRNA_F-serratus_M_contig998.21260.1 ID=mRNA_F-serratus_M_contig998.21260.1|Name=mRNA_F-serratus_M_contig998.21260.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig998:244458..245035+ (Fucus serratus male)back to top |