mRNA_F-serratus_M_contig998.21260.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig998.21260.1
Unique NamemRNA_F-serratus_M_contig998.21260.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: A0A6H5KVV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVV7_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.240e-25
Identity = 85/190 (44.74%), Postives = 104/190 (54.74%), Query Frame = -3
Query:    7 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLLLGASPAPLPTMEDSPDVEENERYEESGMFGDDINDHTSEAEQVEADEREKEDTSGDGNDDTLEKDDKMQEEPNPIPKPESRRPIHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAVDGIGGHSHGPHHLRPGHPPGMG 576
            LR+  GV SMTA  LEK M LL+L P RLVV+GLAP +LL G S A              +  + SG  G ++    ++  QV  D       SGD   D + K + +  E N      S+ P+HAALV+ GI LRPRET+ LLRAL V PHR V+LGLV  + LR     GG   GP HLR GHP G G
Sbjct:   34 LREYHGVPSMTADNLEKTMVLLRLRPGRLVVQGLAPEKLLKGFSAADAHA----------DTTDSSGSSGSEVEPEQADDNQVSDDXXXXXXXSGDTEHDNIRKHNSLGFETNK----RSKHPVHAALVAAGITLRPRETRPLLRALGVGPHRLVKLGLVQREELRRSR-PGGRRGGPSHLRHGHPGGPG 208          
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: A0A6H5KB69_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KB69_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 7.140e-14
Identity = 76/191 (39.79%), Postives = 93/191 (48.69%), Query Frame = -3
Query:   73 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLLLGASPAPLPTMEDSP----DVEENERYEESGMFGDDINDHTSEAEQVEADERE--------KED-----------TSGDGNDDTLEKDDKMQEEPNPIPKPESRRPIHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 576
            LR+  GV SMTAP L K +  L+L PRRLV +GLAP+ LL          M+ S     D E NE   ES   G        E   VE D++E        K D           TS   ND+  E DD   E    +        IH A ++GGI+LRPRE + LL ALDV P R  +LGLV+GK LRA+
Sbjct:  115 LREYNGVPSMTAPKLIKTLAFLKLNPRRLVKQGLAPKNLLARMKAEAANNMKVSKVTLGDGENNEDLAESVAAG-------MELMSVEDDKKECNNGFVSAKPDASAAAVPITAKTSSPDNDNEEENDDAAPEVKKNL--------IHTAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVNGKYLRAM 290          
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: D8LN66_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN66_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.140e-13
Identity = 74/182 (40.66%), Postives = 95/182 (52.20%), Query Frame = -3
Query:   73 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLL--LGASPAPLPTMEDSP--DVEENERYEESGMFGDDINDHTSEAEQVEADERE---------KEDTSGDGNDDTLEKDDKMQEEPNPIPKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 576
            LR+  GV SMT P L K +  L+L P+RLV +GLAP+ LL  + A  A    +   P  D + NE   ES   G        E   +E D++E           DTS   ND+         EE N    PE ++  IH A ++GGI+LRPRE + LL ALDV P R  +LGLVDGK LRA+
Sbjct:  131 LREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKNLLPRMKAEAANNAKVSKVPLGDGKNNEDLAESVAAG-------MELMSLEDDKKEWNDGFVSVEPADTSSPDNDN---------EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAM 296          
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: A0A6H5JQ17_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ17_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 4.410e-13
Identity = 74/183 (40.44%), Postives = 94/183 (51.37%), Query Frame = -3
Query:   73 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLL--LGASPAPLPTMEDSP--DVEENERYEESGMFGDDINDHTSEAEQVEADEREKEDTSGDGNDDT----------LEKDDKMQEEPNPIPKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 576
            LR+  GV SMTAP L K +  L+L P+RLV +GLAP+ LL  + A  A    +   P  D + NE   ES   G        E   VE D++E  D       D               D   EE N    PE+++  IH A ++GGI+LRPRE + LL ALDV P R  +LGLVDGK LRA+
Sbjct:  133 LREYNGVPSMTAPKLIKTLAFLKLNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAG-------MELMSVEDDKKEWNDGFVSAESDASAAAVPITAKTSTPDNDNEEENNDAAPETKKDLIHKAFITGGIQLRPREVRPLLVALDVRPCRLAKLGLVDGKDLRAM 308          
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: A0A6H5KAY7_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAY7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 1.000e-12
Identity = 70/176 (39.77%), Postives = 92/176 (52.27%), Query Frame = -3
Query:   73 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLLLG-----ASPAPLPTME--DSPDVEENERYEESGMFGDDINDHTSEAEQVEADEREKEDTSGDGNDDTLEKDDKMQEEPNPIPKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 576
            LR+  GV SMT P L K +  L+L P+RLV +GLAP+ LL       A+ A L  +   D  + E+   +  +GM          E   VE D++E  D             D   EE N    PE ++  IH A ++GGI+LRPRE + LL ALDV P R  +LGLVDGK LRA+
Sbjct:  142 LREYNGVPSMTPPKLVKTLAFLKLNPQRLVKQGLAPKMLLARMKAETANNAKLSKVRLGDGKNNEDLAEWVAAGM----------EFMSVEDDKKEWNDGFVSVEPAETSSSDNGNEEENDDAAPEVKQNLIHKAFIAGGIQLRPREVRPLLVALDVRPWRLAKLGLVDGKDLRAM 307          
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: D8LN68_ECTSI (PB1 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN68_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 1.090e-12
Identity = 74/182 (40.66%), Postives = 95/182 (52.20%), Query Frame = -3
Query:   73 LRKSQGVNSMTAPMLEKIMTLLQLEPRRLVVRGLAPRRLL--LGASPAPLPTMEDSP--DVEENERYEESGMFGDDINDHTSEAEQVEADERE---------KEDTSGDGNDDTLEKDDKMQEEPNPIPKPESRRP-IHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALRAV 576
            LR+  GV SMT   L K +  L+L P+RLV +GLAP+ LL  + A  A    +   P  D + NE   ES   G        E   VE D++E           DTS  GND+         EE N    PE ++  IH A ++GGI+LRPRE + LL ALDV P R  +LGLV+GK LRA+
Sbjct:  115 LREYNGVPSMTPLKLVKTLAFLELNPQRLVKQGLAPKVLLARMKAEAANNAKVSKVPLGDGKNNEDLAESVAAG-------MELMSVEDDKKEWNDGFVSVEPADTSSPGNDN---------EEKNDAVAPEVKKNLIHKAFIAGGIQLRPREVRPLLVALDVRPCRLAKLGLVNGKDLRAM 280          
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Match: A0A6H5L2C8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C8_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.150e-7
Identity = 28/47 (59.57%), Postives = 35/47 (74.47%), Query Frame = -3
Query:   79 SRRPIHAALVSGGIKLRPRETKALLRALDVSPHRFVRLGLVDGKALR 219
            S+ PIHA  V+ G++LRPRET+ LLRAL V PHR V+LGLV  +  R
Sbjct:  100 SKHPIHAVFVAAGVQLRPRETRPLLRALGVGPHRLVKLGLVQREEAR 146          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig998.21260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KVV7_9PHAE2.240e-2544.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KB69_9PHAE7.140e-1439.79PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN66_ECTSI1.140e-1340.66PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JQ17_9PHAE4.410e-1340.44PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KAY7_9PHAE1.000e-1239.77PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LN68_ECTSI1.090e-1240.66PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L2C8_9PHAE1.150e-759.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig998contigF-serratus_M_contig998:244458..245035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size578
Cds size423
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig998.21260.1prot_F-serratus_M_contig998.21260.1Fucus serratus malepolypeptideF-serratus_M_contig998 244512..244934 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.8717146-UTR-F-serratus_M_contig998:244457..2445111622932794.8717146-UTR-F-serratus_M_contig998:244457..244511Fucus serratus maleUTRF-serratus_M_contig998 244458..244511 +
1690964479.1071522-UTR-F-serratus_M_contig998:244457..2445111690964479.1071522-UTR-F-serratus_M_contig998:244457..244511Fucus serratus maleUTRF-serratus_M_contig998 244458..244511 +
1622932794.903965-UTR-F-serratus_M_contig998:244934..2450351622932794.903965-UTR-F-serratus_M_contig998:244934..245035Fucus serratus maleUTRF-serratus_M_contig998 244935..245035 +
1690964479.1344216-UTR-F-serratus_M_contig998:244934..2450351690964479.1344216-UTR-F-serratus_M_contig998:244934..245035Fucus serratus maleUTRF-serratus_M_contig998 244935..245035 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932794.8894784-CDS-F-serratus_M_contig998:244511..2449341622932794.8894784-CDS-F-serratus_M_contig998:244511..244934Fucus serratus maleCDSF-serratus_M_contig998 244512..244934 +
1690964479.1248014-CDS-F-serratus_M_contig998:244511..2449341690964479.1248014-CDS-F-serratus_M_contig998:244511..244934Fucus serratus maleCDSF-serratus_M_contig998 244512..244934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig998.21260.1

>prot_F-serratus_M_contig998.21260.1 ID=prot_F-serratus_M_contig998.21260.1|Name=mRNA_F-serratus_M_contig998.21260.1|organism=Fucus serratus male|type=polypeptide|length=141bp
MASNAVHGAKGLAVHEPEPYEAVGAHIESAKQGLGLAGTQFDAAAHQSRV
NGAPRLRLRNRVRFLLHLVVLFEGVIIAVSRGVLLFSLICLHLLRLRRVV
VDVISKHPALLVSLIFFYIRAVLHRGQWCRRCSQKQPSRS*
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mRNA from alignment at F-serratus_M_contig998:244458..245035+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig998.21260.1 ID=mRNA_F-serratus_M_contig998.21260.1|Name=mRNA_F-serratus_M_contig998.21260.1|organism=Fucus serratus male|type=mRNA|length=578bp|location=Sequence derived from alignment at F-serratus_M_contig998:244458..245035+ (Fucus serratus male)
GTGTTTGCCCATGCCGGGTGGGTGTCCCGGACGAAGGTGGTGTGGGCCGT GCGAATGGCCTCCAATGCCGTCCACGGCGCGAAGGGCCTTGCCGTCCACG AGCCCGAGCCTTACGAAGCGGTGGGGGCTCACATCGAGAGCGCGAAGCAG GGCCTTGGTCTCGCGGGGACGCAGTTTGATGCCGCCGCTCACCAGAGCCG CGTGAATGGGGCGCCGCGACTCCGGCTTCGGAATCGGGTTCGGTTCCTCC TGCATCTTGTCGTCCTTTTCGAGGGTGTCATCATTGCCGTCTCCCGAGGT GTCCTCCTTTTCTCGCTCATCTGCCTCCACCTGCTCCGCCTCCGACGTGT GGTCGTTGATGTCATCTCCAAACATCCCGCTCTCCTCGTATCTCTCATTT TCTTCTACATCAGGGCTGTCCTCCATCGTGGGCAGTGGTGCAGGCGATGC TCCCAGAAGCAGCCTTCGAGGAGCTAGACCCCGTACGACCAGCCGCCGAG GCTCCAGTTGCAGGAGTGTCATGATCTTCTCAAGCATGGGCGCCGTCATG GAGTTCACCCCTTGAGACTTGCGCAAGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig998:244458..245035+

>mRNA_F-serratus_M_contig998.21260.1 ID=mRNA_F-serratus_M_contig998.21260.1|Name=mRNA_F-serratus_M_contig998.21260.1|organism=Fucus serratus male|type=CDS|length=846bp|location=Sequence derived from alignment at F-serratus_M_contig998:244458..245035+ (Fucus serratus male)
ATGGCCTCCAATGCCGTCCACGGCGCGAAGGGCCTTGCCGTCCACGAGCC
CGAGCCTTACGAAGCGGTGGGGGCTCACATCGAGAGCGCGAAGCAGGGCC
TTGGTCTCGCGGGGACGCAGTTTGATGCCGCCGCTCACCAGAGCCGCGTG
AATGGGGCGCCGCGACTCCGGCTTCGGAATCGGGTTCGGTTCCTCCTGCA
TCTTGTCGTCCTTTTCGAGGGTGTCATCATTGCCGTCTCCCGAGGTGTCC
TCCTTTTCTCGCTCATCTGCCTCCACCTGCTCCGCCTCCGACGTGTGGTC
GTTGATGTCATCTCCAAACATCCCGCTCTCCTCGTATCTCTCATTTTCTT
CTACATCAGGGCTGTCCTCCATCGTGGGCAGTGGTGCAGGCGATGCTCCC
AGAAGCAGCCTTCGAGGAGCTAGATGGCCTCCAATGCCGTCCACGGCGCG
AAGGGCCTTGCCGTCCACGAGCCCGAGCCTTACGAAGCGGTGGGGGCTCA
CATCGAGAGCGCGAAGCAGGGCCTTGGTCTCGCGGGGACGCAGTTTGATG
CCGCCGCTCACCAGAGCCGCGTGAATGGGGCGCCGCGACTCCGGCTTCGG
AATCGGGTTCGGTTCCTCCTGCATCTTGTCGTCCTTTTCGAGGGTGTCAT
CATTGCCGTCTCCCGAGGTGTCCTCCTTTTCTCGCTCATCTGCCTCCACC
TGCTCCGCCTCCGACGTGTGGTCGTTGATGTCATCTCCAAACATCCCGCT
CTCCTCGTATCTCTCATTTTCTTCTACATCAGGGCTGTCCTCCATCGTGG
GCAGTGGTGCAGGCGATGCTCCCAGAAGCAGCCTTCGAGGAGCTAG
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