mRNA_F-serratus_M_contig994.21235.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig994.21235.1
Unique NamemRNA_F-serratus_M_contig994.21235.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig994.21235.1 vs. uniprot
Match: D8LEH8_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEH8_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 3.250e-21
Identity = 58/102 (56.86%), Postives = 70/102 (68.63%), Query Frame = 2 
Query:   23 GSGAFSEALRVSRRETATVFLVREGSIAVTQGGLTRT-VRAGEVCVCGVPRRGIPPVTRVACSPQEREVTVVSVPLESLRRGSVFT-PASLDSFLRLLSVGY 322
            GS    E  RVSRR+  TV L REGS AVT    TR  V AGEV VCGVPRRGIP +T+V     + +  VV VPLES R+G +F+ PA+LD+FLR+LSVG+
Sbjct:  715 GSSGMGETRRVSRRDAPTVLLFREGSAAVTLSDGTRMKVGAGEVLVCGVPRRGIPRITKVT---SDTKAKVVEVPLESFRKGGLFSSPAALDAFLRVLSVGF 813
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BLAST of mRNA_F-serratus_M_contig994.21235.1 vs. uniprot
Match: A0A6H5JEK9_9PHAE (cGMP-dependent protein kinase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEK9_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 4.480e-21
Identity = 58/102 (56.86%), Postives = 69/102 (67.65%), Query Frame = 2 
Query:   23 GSGAFSEALRVSRRETATVFLVREGSIAVTQGGLTRT-VRAGEVCVCGVPRRGIPPVTRVACSPQEREVTVVSVPLESLRRGSVFT-PASLDSFLRLLSVGY 322
            GS    E  RVSRR+  TV L REGS AVT    TR  V AGEV VCGVPRRGIP +T+V     + +  VV VPLES R+G +F+ P SLD+FLR+LSVG+
Sbjct:  820 GSSGMGETRRVSRRDAPTVLLFREGSAAVTLSDGTRMKVGAGEVLVCGVPRRGIPRITKVT---SDSKAKVVEVPLESFRKGGLFSSPTSLDAFLRVLSVGF 918
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig994.21235.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEH8_ECTSI3.250e-2156.86cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5JEK9_9PHAE4.480e-2156.86cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig994contigF-serratus_M_contig994:276225..276999 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size431
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932790.8328824-CDS-F-serratus_M_contig994:276224..2763671622932790.8328824-CDS-F-serratus_M_contig994:276224..276367Fucus serratus maleCDSF-serratus_M_contig994 276225..276367 +
1690964477.2310371-CDS-F-serratus_M_contig994:276224..2763671690964477.2310371-CDS-F-serratus_M_contig994:276224..276367Fucus serratus maleCDSF-serratus_M_contig994 276225..276367 +
1622932790.8520064-CDS-F-serratus_M_contig994:276711..2769971622932790.8520064-CDS-F-serratus_M_contig994:276711..276997Fucus serratus maleCDSF-serratus_M_contig994 276712..276997 +
1690964477.2465098-CDS-F-serratus_M_contig994:276711..2769971690964477.2465098-CDS-F-serratus_M_contig994:276711..276997Fucus serratus maleCDSF-serratus_M_contig994 276712..276997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig994.21235.1prot_F-serratus_M_contig994.21235.1Fucus serratus malepolypeptideF-serratus_M_contig994 276225..276997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig994.21235.1

>prot_F-serratus_M_contig994.21235.1 ID=prot_F-serratus_M_contig994.21235.1|Name=mRNA_F-serratus_M_contig994.21235.1|organism=Fucus serratus male|type=polypeptide|length=143bp
GRSGVSRREWGVFGSLAGQPEGDSNGVSRARGFDCRDTGGADAHRPRRRS
MRLRRSEARDSPRHPRRLQPARARGDGGVSAFGEPAAGERVHSRFSRLFL
EASQRGLRLVGREFRHECGHRFEGSQGHTRFSMGGCEWRITAG
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mRNA from alignment at F-serratus_M_contig994:276225..276999+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig994.21235.1 ID=mRNA_F-serratus_M_contig994.21235.1|Name=mRNA_F-serratus_M_contig994.21235.1|organism=Fucus serratus male|type=mRNA|length=775bp|location=Sequence derived from alignment at F-serratus_M_contig994:276225..276999+ (Fucus serratus male)
GGAAGAAGTGGGGTTTCCCGGAGGGAGTGGGGCGTTTTCGGAAGCCTTGC
GGGTCAGCCGGAGGGAGACAGCAACGGTGTTTCTCGTGCGAGAGGGTTCG
ATTGCCGTGACACAGGGGGGGCTGACGCGCACCGTCCGCGCAGGTAATGA
ATGGCTCGTTCTCCAGCGCTAATCGAAGGATTTCGTGAAGCGATGGACTG
CTGCAAGTCTCGTCATCGCGGCTGTTCGCCTGTCGTGCTTGATCTCTCGA
CCAAGAGTTCGCGGGTGTATTGTTTTTATCGGGCATGTCGCCTTGTTGAC
CGCGGCCTCTTATACGCGTCACTCGCCGAGACGCGCTCTCAGCAACAACA
GCTAATGCTTCCTCCGCAAAACGATATTATTGTAAAAAAGAAAACCGCCG
AGCGAACGTGTCTACACTTGTTACACCCATGCCTCCCGCTTCGTTTCTAC
CTCGCGGCCCGAACGTTTTTTTTTGCCAAAACCAAAGGCGAAGTATGCGT
CTGCGGCGTTCCGAGGCGAGGGATTCCCCCCGTCACCCGCGTCGCCTGCA
GCCCGCAAGAGCGCGAGGTGACGGTGGTGTCAGTGCCTTTGGAGAGCCTG
CGGCGGGGGAGCGTGTTCACTCCCGCTTCTCTCGACTCTTTCTTGAGGCT
TCTCAGCGTGGGTTACGGCTTGTCGGACGCGAGTTTCGTCACGAGTGCGG
GCACCGCTTCGAGGGCAGCCAAGGGCACACCCGCTTCTCCATGGGAGGGT
GTGAATGGAGGATTACAGCGGGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig994:276225..276999+

>mRNA_F-serratus_M_contig994.21235.1 ID=mRNA_F-serratus_M_contig994.21235.1|Name=mRNA_F-serratus_M_contig994.21235.1|organism=Fucus serratus male|type=CDS|length=858bp|location=Sequence derived from alignment at F-serratus_M_contig994:276225..276999+ (Fucus serratus male)
GGAAGAAGTGGGGTTTCCCGGAGGGAGTGGGGCGTTTTCGGAAGCCTTGC
GGGTCAGCCGGAGGGAGACAGCAACGGTGTTTCTCGTGCGAGAGGGTTCG
ATTGCCGTGACACAGGGGGGGCTGACGCGCACCGTCCGCGCAGGGAAGAA
GTGGGGTTTCCCGGAGGGAGTGGGGCGTTTTCGGAAGCCTTGCGGGTCAG
CCGGAGGGAGACAGCAACGGTGTTTCTCGTGCGAGAGGGTTCGATTGCCG
TGACACAGGGGGGGCTGACGCGCACCGTCCGCGCAGGCGAAGTATGCGTC
TGCGGCGTTCCGAGGCGAGGGATTCCCCCCGTCACCCGCGTCGCCTGCAG
CCCGCAAGAGCGCGAGGTGACGGTGGTGTCAGTGCCTTTGGAGAGCCTGC
GGCGGGGGAGCGTGTTCACTCCCGCTTCTCTCGACTCTTTCTTGAGGCTT
CTCAGCGTGGGTTACGGCTTGTCGGACGCGAGTTTCGTCACGAGTGCGGG
CACCGCTTCGAGGGCAGCCAAGGGCACACCCGCTTCTCCATGGGAGGGTG
TGAATGGAGGATTACAGCGGGGGCGAAGTATGCGTCTGCGGCGTTCCGAG
GCGAGGGATTCCCCCCGTCACCCGCGTCGCCTGCAGCCCGCAAGAGCGCG
AGGTGACGGTGGTGTCAGTGCCTTTGGAGAGCCTGCGGCGGGGGAGCGTG
TTCACTCCCGCTTCTCTCGACTCTTTCTTGAGGCTTCTCAGCGTGGGTTA
CGGCTTGTCGGACGCGAGTTTCGTCACGAGTGCGGGCACCGCTTCGAGGG
CAGCCAAGGGCACACCCGCTTCTCCATGGGAGGGTGTGAATGGAGGATTA
CAGCGGGG
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