mRNA_F-serratus_M_contig994.21233.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig994.21233.1
Unique NamemRNA_F-serratus_M_contig994.21233.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig994.21233.1 vs. uniprot
Match: D8LEH7_ECTSI (Proteasome endopeptidase complex n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH7_ECTSI)

HSP 1 Score: 330 bits (845), Expect = 3.170e-105
Identity = 167/221 (75.57%), Postives = 185/221 (83.71%), Query Frame = 2 
Query:  176 ATTVVAARFQDGVVIGADSRTSQGNFVANRLTDKITPIYPGIFLARSGSSADSQFVAGVVEAKLEAYRTEFGRAPTVRVAATISRNLCYNNKDQLSAGVICAGWDPREGGSVFSIPQGGSLLELPFAISGSGSVYALGYCDDHLRPGLGRDECVLHVQKALEMALSRDGASGGIIRMCVATRAGVERWTVAPGLLQQ-----------RREAGRTPGDGGG 805
            ATT+VAARF  GVVIGADSRTSQG+FVAN  TDKITP+ PG+FLARSGSSAD+QFVAGV+EAKLEAYRTEFGR PTVR AAT +RNLCY NKDQLSAG+ICAGWD REGGSVFS+PQGGSLLE PFA+SGSG+VYALGYCDD+LRPGLGRDECV HV+ ALEMA+ RDGASGG+IR+CV +  GVERWTV PG+              RREA R   DGGG
Sbjct:   22 ATTLVAARFDGGVVIGADSRTSQGSFVANSGTDKITPVSPGVFLARSGSSADTQFVAGVIEAKLEAYRTEFGRYPTVRAAATATRNLCYANKDQLSAGIICAGWDSREGGSVFSVPQGGSLLEQPFAVSGSGAVYALGYCDDNLRPGLGRDECVSHVRTALEMAVRRDGASGGVIRLCVVSADGVERWTVVPGMTAAAAAGVGEXXXGRREA-RRASDGGG 241
[Close]
BLAST of mRNA_F-serratus_M_contig994.21233.1 vs. uniprot
Match: A0A1Y1WB45_9FUNG (Proteasome subunit beta n=1 Tax=Linderina pennispora TaxID=61395 RepID=A0A1Y1WB45_9FUNG)

HSP 1 Score: 217 bits (553), Expect = 1.280e-62
Identity = 103/199 (51.76%), Postives = 145/199 (72.86%), Query Frame = 2 
Query:  173 LATTVVAARFQDGVVIGADSRTSQGNFVANRLTDKITPIYPGIFLARSGSSADSQFVAGVVEAKLEAYRTEFGRAPTVRVAATISRNLCYNNKDQLSAGVICAGWDPREGGSVFSIPQGGSLLELPFAISGSGSVYALGYCDDHLRPGLGRDECVLHVQKALEMALSRDGASGGIIRMCVATRAGVERWTVAPGLLQQR 769
            L TT++A +F  GVV+GADSRT+ G ++ANR+TDK+T I+  I+  RSGS+AD+Q VA +V+  ++ Y  + G APTV+VAA++ + +CY NK+ LSAG+I AGWD R+G SV++IP GGSL   PFAI GSGS Y  GYCD   RP L RDEC+  V+ ++ +A++RDG+SGG++R+ V T+ GVER  V    L ++
Sbjct:   11 LGTTIMAVQFDGGVVVGADSRTTTGAYIANRVTDKLTKIHDRIYCCRSGSAADTQAVADIVQYHMQMYTAQHGEAPTVKVAASLFQEICYQNKNNLSAGIIVAGWDERDGASVYNIPLGGSLHREPFAIGGSGSTYIYGYCDKVFRPDLSRDECIEFVKNSVSLAMTRDGSSGGVVRLAVITKDGVERQFVPGDQLPEQ 209
[Close]
BLAST of mRNA_F-serratus_M_contig994.21233.1 vs. uniprot
Match: A0A8H7UIW0_MORIS (Proteasome subunit beta n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7UIW0_MORIS)

HSP 1 Score: 214 bits (544), Expect = 2.480e-61
Identity = 99/188 (52.66%), Postives = 141/188 (75.00%), Query Frame = 2 
Query:  173 LATTVVAARFQDGVVIGADSRTSQGNFVANRLTDKITPIYPGIFLARSGSSADSQFVAGVVEAKLEAYRTEFGRAPTVRVAATISRNLCYNNKDQLSAGVICAGWDPREGGSVFSIPQGGSLLELPFAISGSGSVYALGYCDDHLRPGLGRDECVLHVQKALEMALSRDGASGGIIRMCVATRAGVER 736
            L T+++A  F+DGV++GADSRT+ G+++ANR+TDK+T ++  I+  RSGS+AD+Q VA +V+  L+ Y  +    P+V  AAT+ + +CY NKDQLSAG+I AGWD ++GG+V++IP GGSL + PFAI GSGS Y  GYCD   + G+ R+ECV  V+ +L +A++RDG+SGG+IRM V T  GVER
Sbjct:   10 LGTSIMAVAFKDGVIVGADSRTTTGSYIANRVTDKLTKVHDLIYCCRSGSAADTQAVADIVQYYLQMYSVQQDEPPSVHTAATLFQEMCYQNKDQLSAGIIVAGWDKKKGGTVYNIPLGGSLHQQPFAIGGSGSTYIYGYCDSQYKDGMSREECVDFVKNSLALAMARDGSSGGVIRMAVITEKGVER 197
[Close]
BLAST of mRNA_F-serratus_M_contig994.21233.1 vs. uniprot
Match: A0A2H3JGI1_WOLCO (Proteasome subunit beta n=1 Tax=Wolfiporia cocos (strain MD-104) TaxID=742152 RepID=A0A2H3JGI1_WOLCO)

HSP 1 Score: 214 bits (545), Expect = 4.630e-61
Identity = 102/188 (54.26%), Postives = 137/188 (72.87%), Query Frame = 2 
Query:  173 LATTVVAARFQDGVVIGADSRTSQGNFVANRLTDKITPIYPGIFLARSGSSADSQFVAGVVEAKLEAYRTEFGRAPTVRVAATISRNLCYNNKDQLSAGVICAGWDPREGGSVFSIPQGGSLLELPFAISGSGSVYALGYCDDHLRPGLGRDECVLHVQKALEMALSRDGASGGIIRMCVATRAGVER 736
            L T+++A +F+DGVVIGADSRT+ G+++ANR+TDK+T ++  I+  RSGS+AD+Q +A  V   L+ Y   +G AP+V  AAT+   LCY+NKD LSAG+ICAGWD  EG SV++IP GG +   P+AI GSGS Y  GYCD   R G G++E +  V+  L +A+SRDG+SGG+IRMCV T  GVER
Sbjct:   18 LGTSIMAVQFKDGVVIGADSRTTTGSYIANRVTDKLTHVHDRIYCCRSGSAADTQAIADSVHYSLQIYTQIYGHAPSVHTAATVFNRLCYDNKDMLSAGIICAGWDKDEGPSVYNIPLGGGIFRQPWAIGGSGSTYVYGYCDATYREGWGKEETIEFVKNTLALAMSRDGSSGGVIRMCVITGDGVER 205
[Close]
BLAST of mRNA_F-serratus_M_contig994.21233.1 vs. uniprot
Match: A0A1Y1Y0Z6_9FUNG (Proteasome subunit beta n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Y0Z6_9FUNG)

HSP 1 Score: 213 bits (542), Expect = 4.980e-61
Identity = 100/188 (53.19%), Postives = 136/188 (72.34%), Query Frame = 2 
Query:  173 LATTVVAARFQDGVVIGADSRTSQGNFVANRLTDKITPIYPGIFLARSGSSADSQFVAGVVEAKLEAYRTEFGRAPTVRVAATISRNLCYNNKDQLSAGVICAGWDPREGGSVFSIPQGGSLLELPFAISGSGSVYALGYCDDHLRPGLGRDECVLHVQKALEMALSRDGASGGIIRMCVATRAGVER 736
            L TT++A  F  GV+IGADSRT+ G+++ANR+TDK+TP++  I+  RSGS+AD+Q VA +V   L+ Y  + G APT R AA++ + LCY NKD L AG+I  GWD ++GG V++IP GGSL   PFAI GSGS Y  GYCD   + G+ +DEC+  V+ A+ +A+SRDG+SGG+IRM + T  GVER
Sbjct:   11 LGTTIMAVEFDKGVIIGADSRTTTGSYIANRVTDKLTPVHDRIWCCRSGSAADTQAVADIVHYYLQMYSVQHGEAPTTRAAASLFQELCYTNKDALMAGIIVGGWDKKDGGCVYNIPLGGSLHREPFAIGGSGSTYIYGYCDSVYKRGMTKDECLEFVRNAVSLAMSRDGSSGGVIRMAIITEEGVER 198
[Close]
BLAST of mRNA_F-serratus_M_contig994.21233.1 vs. uniprot
Match: A0A0K6FW39_9AGAM (Proteasome subunit beta n=16 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6FW39_9AGAM)

HSP 1 Score: 214 bits (544), Expect = 5.690e-61
Identity = 104/188 (55.32%), Postives = 136/188 (72.34%), Query Frame = 2 
Query:  173 LATTVVAARFQDGVVIGADSRTSQGNFVANRLTDKITPIYPGIFLARSGSSADSQFVAGVVEAKLEAYRTEFGRAPTVRVAATISRNLCYNNKDQLSAGVICAGWDPREGGSVFSIPQGGSLLELPFAISGSGSVYALGYCDDHLRPGLGRDECVLHVQKALEMALSRDGASGGIIRMCVATRAGVER 736
            L T+++A +F+ GVVIGADSRT+ G+++ANR+TDK+T ++  I+  RSGS+AD+Q VA +V   L+ Y  ++   PTV  AATI + +CY+NKD LSAG+I AGWD + GGSV++IP GG L   P+AI GSGS Y  GYCD   R G GRDE V  V+  L +A+SRDG+SGG IRMCV T  GVER
Sbjct:   16 LGTSIMAVQFEGGVVIGADSRTTMGSYIANRVTDKLTHVHDRIYCCRSGSAADTQAVADIVHYYLQMYEQQYSERPTVHTAATIFQRICYDNKDALSAGIIVAGWDKQVGGSVYNIPVGGGLFRQPWAIGGSGSTYVYGYCDATYREGWGRDETVNFVKNTLALAMSRDGSSGGTIRMCVITEDGVER 203
[Close]
BLAST of mRNA_F-serratus_M_contig994.21233.1 vs. uniprot
Match: A0A8H8LV04_9AGAM (Proteasome subunit beta n=2 Tax=Ceratobasidium sp. AG-Ba TaxID=170446 RepID=A0A8H8LV04_9AGAM)

HSP 1 Score: 214 bits (544), Expect = 5.690e-61
Identity = 104/188 (55.32%), Postives = 135/188 (71.81%), Query Frame = 2 
Query:  173 LATTVVAARFQDGVVIGADSRTSQGNFVANRLTDKITPIYPGIFLARSGSSADSQFVAGVVEAKLEAYRTEFGRAPTVRVAATISRNLCYNNKDQLSAGVICAGWDPREGGSVFSIPQGGSLLELPFAISGSGSVYALGYCDDHLRPGLGRDECVLHVQKALEMALSRDGASGGIIRMCVATRAGVER 736
            L T+++A +F+DGVVIGADSRT+ G+++ANR+TDK+T ++  ++  RSGS+AD+Q VA +V   L+ Y  ++G  PTV  AAT+ + LCY NKD LSAG+I AGWD   G SV++IP GG L   P+AI GSGS Y  GYCD   R G GRDE V  V+  L +A+SRDG+SGG IRMCV T  GVER
Sbjct:   16 LGTSIMAVQFKDGVVIGADSRTTMGSYIANRVTDKLTFVHDRVYCCRSGSAADTQAVADIVHYYLQMYEQQYGDPPTVHAAATLFQRLCYENKDNLSAGIIVAGWDKEAGPSVYNIPVGGGLFRQPWAIGGSGSTYVYGYCDATYREGWGRDETVNFVKNTLALAMSRDGSSGGTIRMCVITEEGVER 203
[Close]
BLAST of mRNA_F-serratus_M_contig994.21233.1 vs. uniprot
Match: A0A4P9XSG4_9FUNG (Proteasome subunit beta n=1 Tax=Thamnocephalis sphaerospora TaxID=78915 RepID=A0A4P9XSG4_9FUNG)

HSP 1 Score: 210 bits (535), Expect = 5.270e-60
Identity = 102/188 (54.26%), Postives = 130/188 (69.15%), Query Frame = 2 
Query:  173 LATTVVAARFQDGVVIGADSRTSQGNFVANRLTDKITPIYPGIFLARSGSSADSQFVAGVVEAKLEAYRTEFGRAPTVRVAATISRNLCYNNKDQLSAGVICAGWDPREGGSVFSIPQGGSLLELPFAISGSGSVYALGYCDDHLRPGLGRDECVLHVQKALEMALSRDGASGGIIRMCVATRAGVER 736
            L TT++A  F  GVVI ADSRT+ G ++ANR+TDK+T ++  I+  RSGS+AD+Q VA +V   ++ Y  E   AP  RVAA I + LCY NKD LSAG+I AGWD   GG V+SIP GGSL   PFAI GSGS Y  GYCD   R G+ RDECV   + A+ +A++RDG+SGG+IR+ + T  GVER
Sbjct:   12 LGTTIMAVEFDGGVVIAADSRTTTGAYIANRVTDKLTKVHDRIYCCRSGSAADTQAVADIVHYYMQMYSVEHSEAPRTRVAAAIFQELCYKNKDALSAGIIVAGWDKHTGGQVYSIPLGGSLHRQPFAIGGSGSTYIYGYCDSAFRVGMSRDECVEFTKNAVSLAMARDGSSGGVIRLAIITEGGVER 199
[Close]
BLAST of mRNA_F-serratus_M_contig994.21233.1 vs. uniprot
Match: A0A4P9YVP1_9FUNG (Proteasome subunit beta n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YVP1_9FUNG)

HSP 1 Score: 210 bits (534), Expect = 6.670e-60
Identity = 103/199 (51.76%), Postives = 136/199 (68.34%), Query Frame = 2 
Query:  173 LATTVVAARFQDGVVIGADSRTSQGNFVANRLTDKITPIYPGIFLARSGSSADSQFVAGVVEAKLEAYRTEFGRAPTVRVAATISRNLCYNNKDQLSAGVICAGWDPREGGSVFSIPQGGSLLELPFAISGSGSVYALGYCDDHLRPGLGRDECVLHVQKALEMALSRDGASGGIIRMCVATRAGVERWTVAPGLLQQR 769
            L TT++A  F  GVV+ ADSRT+ G ++ANR+TDK+T ++  I+  RSGS+AD+Q VA +V   L+ Y  +   APT RVAA++ + LCY NKD LSAG+I AGWD + GG V+ IP GGSL   PFAI GSGS Y  GYCD   R  + RDECV   + A+ +A++RDG+SGG+IR+ V T  GVER  VA   L ++
Sbjct:   12 LGTTIMAVEFAGGVVVAADSRTTTGAYIANRVTDKLTKVHDRIYCCRSGSAADTQAVADIVHYYLQLYSVQHDEAPTTRVAASLFQELCYKNKDNLSAGIIVAGWDAQHGGQVYGIPLGGSLHRQPFAIGGSGSTYIYGYCDSAYRENMSRDECVEFAKNAVALAMARDGSSGGVIRLAVITEGGVERLFVAGSDLPRK 210
[Close]
BLAST of mRNA_F-serratus_M_contig994.21233.1 vs. uniprot
Match: A0A1C7N0K9_9FUNG (Proteasome subunit beta n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7N0K9_9FUNG)

HSP 1 Score: 209 bits (531), Expect = 1.860e-59
Identity = 100/188 (53.19%), Postives = 137/188 (72.87%), Query Frame = 2 
Query:  173 LATTVVAARFQDGVVIGADSRTSQGNFVANRLTDKITPIYPGIFLARSGSSADSQFVAGVVEAKLEAYRTEFGRAPTVRVAATISRNLCYNNKDQLSAGVICAGWDPREGGSVFSIPQGGSLLELPFAISGSGSVYALGYCDDHLRPGLGRDECVLHVQKALEMALSRDGASGGIIRMCVATRAGVER 736
            L T+++A  F+DGV++GADSRT+ G ++ANR+TDK+T ++  I+  RSGS+AD+Q VA +V   L+ Y      AP+VR AA + + LCY NKD LSAGVI AGWD +EG  V++IP GGSL + PFAI GSGS Y  GYCD + +  + R+EC+  V+ +L +A+SRDG+SGG+IR+ V TR GVER
Sbjct:   10 LGTSIMAVAFKDGVILGADSRTTTGAYIANRVTDKLTKVHDTIYCCRSGSAADTQAVADIVHYYLQMYTASENEAPSVRTAAALFQELCYQNKDNLSAGVIVAGWDKKEGPCVYNIPLGGSLHKQPFAIGGSGSTYIYGYCDAYYKDDMSREECLEFVKNSLALAMSRDGSSGGVIRLAVITREGVER 197
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig994.21233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEH7_ECTSI3.170e-10575.57Proteasome endopeptidase complex n=2 Tax=Ectocarpu... [more]
A0A1Y1WB45_9FUNG1.280e-6251.76Proteasome subunit beta n=1 Tax=Linderina pennispo... [more]
A0A8H7UIW0_MORIS2.480e-6152.66Proteasome subunit beta n=1 Tax=Mortierella isabel... [more]
A0A2H3JGI1_WOLCO4.630e-6154.26Proteasome subunit beta n=1 Tax=Wolfiporia cocos (... [more]
A0A1Y1Y0Z6_9FUNG4.980e-6153.19Proteasome subunit beta n=1 Tax=Basidiobolus meris... [more]
A0A0K6FW39_9AGAM5.690e-6155.32Proteasome subunit beta n=16 Tax=Rhizoctonia solan... [more]
A0A8H8LV04_9AGAM5.690e-6155.32Proteasome subunit beta n=2 Tax=Ceratobasidium sp.... [more]
A0A4P9XSG4_9FUNG5.270e-6054.26Proteasome subunit beta n=1 Tax=Thamnocephalis sph... [more]
A0A4P9YVP1_9FUNG6.670e-6051.76Proteasome subunit beta n=1 Tax=Syncephalis pseudo... [more]
A0A1C7N0K9_9FUNG1.860e-5953.19Proteasome subunit beta n=1 Tax=Choanephora cucurb... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig994contigF-serratus_M_contig994:255699..260171 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.3
Seed ortholog evalue1.6e-87
Seed eggNOG ortholog2880.D8LEH7
Preferred namePSMB6
KEGG koko:K02738,ko:K02741,ko:K11507
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
Hectar predicted targeting categorysignal peptide
GOsGO:0000502,GO:0001889,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003674,GO:0003824,GO:0004175,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009617,GO:0009628,GO:0009896,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010499,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014070,GO:0014889,GO:0016020,GO:0016579,GO:0016787,GO:0019222,GO:0019538,GO:0019774,GO:0019882,GO:0019941,GO:0030071,GO:0030162,GO:0030163,GO:0031331,GO:0031597,GO:0031974,GO:0031981,GO:0031984,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034097,GO:0034515,GO:0036211,GO:0042175,GO:0042221,GO:0042493,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043279,GO:0043412,GO:0043500,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048536,GO:0048538,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051246,GO:0051247,GO:0051336,GO:0051602,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0052547,GO:0052548,GO:0060255,GO:0061008,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070555,GO:0070628,GO:0070646,GO:0070647,GO:0070887,GO:0071214,GO:0071257,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0080090,GO:0090068,GO:0098586,GO:0098827,GO:0104004,GO:0140096,GO:1901423,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990111,GO:2000116,GO:2001252
EggNOG free text desc.Proteasome subunit beta
EggNOG OGsKOG0174@1,KOG0174@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03036,ko03051
Exons6
Model size2149
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig994.21233.1prot_F-serratus_M_contig994.21233.1Fucus serratus malepolypeptideF-serratus_M_contig994 257211..260140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932792.5331132-UTR-F-serratus_M_contig994:255698..2565271622932792.5331132-UTR-F-serratus_M_contig994:255698..256527Fucus serratus maleUTRF-serratus_M_contig994 255699..256527 -
1690964478.1571987-UTR-F-serratus_M_contig994:255698..2565271690964478.1571987-UTR-F-serratus_M_contig994:255698..256527Fucus serratus maleUTRF-serratus_M_contig994 255699..256527 -
1622932792.5486016-UTR-F-serratus_M_contig994:256548..2569721622932792.5486016-UTR-F-serratus_M_contig994:256548..256972Fucus serratus maleUTRF-serratus_M_contig994 256549..256972 -
1690964478.1847363-UTR-F-serratus_M_contig994:256548..2569721690964478.1847363-UTR-F-serratus_M_contig994:256548..256972Fucus serratus maleUTRF-serratus_M_contig994 256549..256972 -
1622932792.564259-UTR-F-serratus_M_contig994:257122..2572101622932792.564259-UTR-F-serratus_M_contig994:257122..257210Fucus serratus maleUTRF-serratus_M_contig994 257123..257210 -
1690964478.1965883-UTR-F-serratus_M_contig994:257122..2572101690964478.1965883-UTR-F-serratus_M_contig994:257122..257210Fucus serratus maleUTRF-serratus_M_contig994 257123..257210 -
1622932792.69047-UTR-F-serratus_M_contig994:260140..2601711622932792.69047-UTR-F-serratus_M_contig994:260140..260171Fucus serratus maleUTRF-serratus_M_contig994 260141..260171 -
1690964478.2699838-UTR-F-serratus_M_contig994:260140..2601711690964478.2699838-UTR-F-serratus_M_contig994:260140..260171Fucus serratus maleUTRF-serratus_M_contig994 260141..260171 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932792.5805986-CDS-F-serratus_M_contig994:257210..2573941622932792.5805986-CDS-F-serratus_M_contig994:257210..257394Fucus serratus maleCDSF-serratus_M_contig994 257211..257394 -
1690964478.2077813-CDS-F-serratus_M_contig994:257210..2573941690964478.2077813-CDS-F-serratus_M_contig994:257210..257394Fucus serratus maleCDSF-serratus_M_contig994 257211..257394 -
1622932792.59488-CDS-F-serratus_M_contig994:257912..2580101622932792.59488-CDS-F-serratus_M_contig994:257912..258010Fucus serratus maleCDSF-serratus_M_contig994 257913..258010 -
1690964478.2212925-CDS-F-serratus_M_contig994:257912..2580101690964478.2212925-CDS-F-serratus_M_contig994:257912..258010Fucus serratus maleCDSF-serratus_M_contig994 257913..258010 -
1622932792.6623456-CDS-F-serratus_M_contig994:258305..2585021622932792.6623456-CDS-F-serratus_M_contig994:258305..258502Fucus serratus maleCDSF-serratus_M_contig994 258306..258502 -
1690964478.239895-CDS-F-serratus_M_contig994:258305..2585021690964478.239895-CDS-F-serratus_M_contig994:258305..258502Fucus serratus maleCDSF-serratus_M_contig994 258306..258502 -
1622932792.676151-CDS-F-serratus_M_contig994:259842..2601401622932792.676151-CDS-F-serratus_M_contig994:259842..260140Fucus serratus maleCDSF-serratus_M_contig994 259843..260140 -
1690964478.250999-CDS-F-serratus_M_contig994:259842..2601401690964478.250999-CDS-F-serratus_M_contig994:259842..260140Fucus serratus maleCDSF-serratus_M_contig994 259843..260140 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig994.21233.1

>prot_F-serratus_M_contig994.21233.1 ID=prot_F-serratus_M_contig994.21233.1|Name=mRNA_F-serratus_M_contig994.21233.1|organism=Fucus serratus male|type=polypeptide|length=259bp
MVKGNALYLFIFTTVSWSQSTFRMSLGIFGLMVLMPTLCMLLSTRDVLAT
TVVAARFQDGVVIGADSRTSQGNFVANRLTDKITPIYPGIFLARSGSSAD
SQFVAGVVEAKLEAYRTEFGRAPTVRVAATISRNLCYNNKDQLSAGVICA
GWDPREGGSVFSIPQGGSLLELPFAISGSGSVYALGYCDDHLRPGLGRDE
CVLHVQKALEMALSRDGASGGIIRMCVATRAGVERWTVAPGLLQQRREAG
RTPGDGGG*
back to top

mRNA from alignment at F-serratus_M_contig994:255699..260171-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig994.21233.1 ID=mRNA_F-serratus_M_contig994.21233.1|Name=mRNA_F-serratus_M_contig994.21233.1|organism=Fucus serratus male|type=mRNA|length=4473bp|location=Sequence derived from alignment at F-serratus_M_contig994:255699..260171- (Fucus serratus male)
CGGTGACCCACCTGCGACTTTCAGTCGGCGAATGGTGAAAGGGAATGCTC
TTTATCTCTTCATATTTACTACGGTGTCCTGGTCTCAATCTACGTTTAGA
ATGTCTCTCGGTATTTTCGGCTTGATGGTGTTGATGCCAACGTTATGCAT
GCTGCTTTCGACAAGGGACGTTTTGGCTACGACCGTTGTTGCGGCGCGAT
TTCAAGATGGGGTAGTTATCGGGGCAGACTCCCGCACAAGCCAAGGCAAC
TTCGTCGCCAACCGCTTGACGGACAAGATCACCCCGATCTATCCCGGGAT
TTTTCTGGCTCGCTCGGGAAGCTCGGCAGGTAGTCCGCAACAACCTGTGT
GCCAAATGGCATGGAGCTCGTTGTTAATGATGGAAATCACGCACTGCAGT
ACTGTATGTCAATGGCCGCAACTAACATTTTTCCACTTTTTCATTTTTGT
CGCGATCGGGGATTGAACCCGCGACGATCTTTTGCAAGTTAGAAGTGCTG
AACCATTAGACTACTCAGTCACTTGCAGTGATTGGAGACGGGAGGACCCC
GGAGATCACTGTCGCTACCGGAAAAGAGCCCGAGACACATATTCTGTAAG
TTAGAAGCGCTAAACCATTGGACTACACCGTGACTGAGTAGTCTAATGTT
TCAGCGCTTCTAACTTACAAAAGATGGTCGCGGGTTCAATCCCCGGTAGC
GACAAGAATGAAAAAGTGGAAAAAAAATGAGTTGCGGCCATTGAGAAATG
TAGAATGTATGGTCATCACATATAGCATGGATCAACCGGATAAGGTTGCC
AATCCTGCTCGTGGTCAGCTGTACAGGAAAAATGAATATCCCCTTGTCCC
CGTGCATACCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCTGTCCCGTC
CCGCGTCAGCCTGCTCATCTCCATACTCAGACTGAATCTGGTGCTTACAT
ACGGGATTCCTCCCGAATTCCGCGGCGGCGTCCATTTATGAAACCGCCAT
ACGCCATCGGGTCAGTCCCGAGTTTATCGGGTCACGCAATTGCGTACCGA
TGGCGTTCACTACCGAAAGCTCGCCGGCACAGTGCCTGTAAACCTCGAGG
TAGTTCCGAACAAGTACTGCCTTGGCAGTCACCATGGACCAATTAATATA
CGCCTCTCTTTCCCACACCCACTACTGGTATGAAGTGGGCATGTTGGAAG
TACCGGCGAGTATACTGCATTGCGTGGCGAGGGGAGGTCCCCGGAGATAG
ATAGATAGATCACTGTCGCTACTGGAAAAGAGCTCAGAGAGCCCGAGACA
TAACTTGTGTAAGTTAGAAGCGCTGGATCATTAGACTACTCAAGTCACAA
GACAAATATTTTCCAAGTTAGAAGCGCTGAACCATTAGACTACTCAGTCA
CTCGCAACGCTTCTAACTTATAAGATCCTGTCCGCACCTGCGAGTATCTT
TGAGGTGGGAGAATAATCTCTTGAGCTGTATGTACATGGCGGGAAAAATC
TGGTGCACTTGCAACCTGCGCTTACCTTCTACTGACAAACGTAGCGCTAC
ACAAAACACTGATGGTTTTACCCCAAAATGCAGAAACTGACCCACCGAAA
GAGCGTGGTTGACGCGTTTCCGACTGGATTACTAAGTCACGGTGCGTGTG
ATCGCTGTTCCTGCGGCAGATTCCCAGTTCGTGGCGGGAGTTGTCGAGGC
TAAACTGGAAGCCTATCGGACCGAATTTGGTCGGGCTCCGACTGTTAGGG
TGGCCGCCACCATTTCAAGAAATCTGTGCTATAACAACAAGGACCAGCTA
TCCGCGGGGGTTATCTGTGCGGGATGGGACCCGCGGGAAGGTGGCTCTGT
GTTCTCGATCCCACAGGTGTGAAGGGTTTTCGGAAAAATGAATTGTTTCT
GTTGAGTGCCTCGACAGCCAGAGACTGGGACGTTTGGGGTGATGAATAAA
GCTTCATGCGGATGGTTGGCTAGCCGATAGATCGAGACAGAGTTAATAAC
GTCTATCACGCGAGTCGTGTTCTCGACAGCAAGACGCTGTAACGTTTGGG
ATGAGAAGTAAAGGTCCATGCGGACGGTTGGCTAGCCGACAAATCGAGAC
AGAGTTCGTGTCCATCACGTGGGTCGTGTTCGACCGACGGCGCGTGGTCC
TGCCCGCACAGGGGGGGTCGCTTCTCGAGCTGCCATTCGCCATCTCCGGG
TCCGGTTCAGTGTACGCGTTGGGCTACTGTGACGACCACCTCCGACCTGG
ACTAGGAAGGTAAAATGTCGGGATCTGTTTTCACGTGTGGGGCTGGCTCA
ATACATCTTTTGGAGGATCTGAATGTGCTTGGTATTTTATGAACGTCTTG
TGATACACGGGAACGCTCTAGTGCGTGATGTCAAAATAAGCTTCCTTGTT
TTGTGCCAGCGAGAACCGCCAGGTTGCTCCTCAACTCTCTACATCTAACC
GTCCGCTTGACCCGGTAGGTTTGTCTGACTAGTTTTTGCAAATCGCGGAG
CGTCGGGTCCTGCGAGGCGCAATTCTCTGCAAGTCTCGATTTTCACTCTA
TGTTTCGCCTCACAAGGCATACCGTGGCAAGGTTTACCACGTGAAGCGAA
TGGATATCCCCTCCGGTACAAAAAGGCGCACAATATAGGGGATATGACCG
ACTTGTGCATCGCGACTTTCAAGTTTCCAAAAGATCGTTAGTCTTTGGGG
CTTAATCATGCCCCCTTTCCGGCGACGCCTTCCTACTTAGTAACACCTTT
TCTCGGCCGTCACTCGCATACGTCCAGGGACGAGTGCGTGCTACACGTGC
AGAAGGCGTTAGAGATGGCGCTCAGCCGTGACGGGGCCTCGGGAGGTATC
ATACGGATGTGCGTCGCAACCAGGGCTGGGGTGGAACGGTGGACTGTTGC
CCCGGGCCTGCTCCAGCAACGGCGGGAGGCGGGGAGGACACCGGGCGACG
GTGGCGGCTGATATAGCATCGGTTTGACCCTGCTACCGATGGTTGCTTTT
TCCGTGGTATGGTAAACTCGCGGCTCGATCGACCGTGAACAGCCACTTGT
CTTAGGTCTCGTCCGGAGAAGCTGCAATTATCAACAAGACAGCGGGTCGC
AGCTTACTTTTTTTTTTTTTTTTTTTTTTTTAGTCACATTTATAGCCGAT
GGACCTCTAATTACCATCCTGCCTGTGGTCACAAAGGATCTTTCCATCTC
TCCCCGGTTCACGCCTTGCAATTTTTATCGCGATGCAAGTTCAGCACTCT
TACAACTCGTCAACCAATGGTTGAATTTACTGGAACCAAACCGAAGTAGT
TCCTCGGACTGGTCAAGCCTCTCTTTTTTTCCCCCCCTTTTTTTGTCAAA
AGACGGCCCGAGCGTATCCCCGCATTTTTATTTTCTAGCGTTCATCGCTA
CGATACTGATCTGCCCCGGGGGGGACCGCGCGCCGTTTCTGGTGGCGTGA
GAGTATTTATTGTGTTATGGAGGCGTGATGGAATCGATGTGCGCTCTGGG
GCGTTCACCTCTGGTTACACTTTTACTGTGAGTACGAAGTTATGGTTATG
GTTATGGTTATGGTTATGATTAAAGAAAAATGTCATGACTACAGTAGTAG
AAATAACATTCTGGGTATAGAGGGTGACCGCCGTGGGTATTGAGGGTGAC
AGCCGTAGCTCATTGCTGATTGGTCGACTCACAGAGCGTCGGAACCCGAA
AACAGAACAAGACGGCGGGTCGGCTCGTTATTGCTGCGACGGAATACCCC
TTGCTCCCCAAACCATGACGCTGCCCGCATGCTTCGAGTTTCTGGAAGGG
AGGCCTCGGGTCTAGCGCGGGCCTTGGTTAATTGCGTAGGGGTTTGTATT
CGTGTGAAGCATTCGTGGTGCGGTACCTTCGATGGATATGATAGATTTGG
TATCGTTTCCGGCCCACCTTGGCTCTTAGTTGCTTTTAATACTTCATGTG
CGTCGTCCCTTCAAGGCTTTATCCACCTCGACTACCGTGTAGGTGAGTAA
GGTTTCCTGGTGTCTTCTAGATTAGTGACGGCCTTCTCAGGCCCTCCTTG
TCTCCTCTCCCTCATCCGAGATTCCGACCCTCTCGACCGAACCATTTGTT
GACGTAGCACGAAACCCCAATGTCCGCCTCTGCCGCTGTTGTTGTCTAGA
TGCCGGAAGCACAATGATAGGCTACCCTAACCATCTTCACCTGTTTAACA
TTAAACTATTATATATACTTTCTGGACAATGGACAAAATCGGGTATACCT
GTTTGTTTCTTAGACAAAATAGGATATCATGGTGTTTTCACGCGTGAGAA
GGTCCTGTTACATCGGACTCAGCCAGCGAAAATGTCTTGTTTTATGCTCT
GCGCCGTGCGTATGGCCTATAACCTTAATAGTCTTAACAGTCTTGATAGT
TTCAATAGTCGTAATAGTCTTAGCAGTCTTAATAGTCTTAACAGTCTTGA
TAGTTTCAATAGTCTTAACAGTC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig994:255699..260171-

>mRNA_F-serratus_M_contig994.21233.1 ID=mRNA_F-serratus_M_contig994.21233.1|Name=mRNA_F-serratus_M_contig994.21233.1|organism=Fucus serratus male|type=CDS|length=1554bp|location=Sequence derived from alignment at F-serratus_M_contig994:255699..260171- (Fucus serratus male)
ATGGTGAAAGGGAATGCTCTTTATCTCTTCATATTTACTACGGTGTCCTG
GTCTCAATCTACGTTTAGAATGTCTCTCGGTATTTTCGGCTTGATGGTGT
TGATGCCAACGTTATGCATGCTGCTTTCGACAAGGGACGTTTTGGCTACG
ACCGTTGTTGCGGCGCGATTTCAAGATGGGGTAGTTATCGGGGCAGACTC
CCGCACAAGCCAAGGCAACTTCGTCGCCAACCGCTTGACGGACAAGATCA
CCCCGATCTATCCCGGGATTTTTCTGGCTCGCTCGGGAAGCTCGGCAGAT
GGTGAAAGGGAATGCTCTTTATCTCTTCATATTTACTACGGTGTCCTGGT
CTCAATCTACGTTTAGAATGTCTCTCGGTATTTTCGGCTTGATGGTGTTG
ATGCCAACGTTATGCATGCTGCTTTCGACAAGGGACGTTTTGGCTACGAC
CGTTGTTGCGGCGCGATTTCAAGATGGGGTAGTTATCGGGGCAGACTCCC
GCACAAGCCAAGGCAACTTCGTCGCCAACCGCTTGACGGACAAGATCACC
CCGATCTATCCCGGGATTTTTCTGGCTCGCTCGGGAAGCTCGGCAGATTC
CCAGTTCGTGGCGGGAGTTGTCGAGGCTAAACTGGAAGCCTATCGGACCG
AATTTGGTCGGGCTCCGACTGTTAGGGTGGCCGCCACCATTTCAAGAAAT
CTGTGCTATAACAACAAGGACCAGCTATCCGCGGGGGTTATCTGTGCGGG
ATGGGACCCGCGGGAAGGTGGCTCTGTGTTCTCGATCCCACAGATTCCCA
GTTCGTGGCGGGAGTTGTCGAGGCTAAACTGGAAGCCTATCGGACCGAAT
TTGGTCGGGCTCCGACTGTTAGGGTGGCCGCCACCATTTCAAGAAATCTG
TGCTATAACAACAAGGACCAGCTATCCGCGGGGGTTATCTGTGCGGGATG
GGACCCGCGGGAAGGTGGCTCTGTGTTCTCGATCCCACAGGGGGGGTCGC
TTCTCGAGCTGCCATTCGCCATCTCCGGGTCCGGTTCAGTGTACGCGTTG
GGCTACTGTGACGACCACCTCCGACCTGGACTAGGAAGGGGGGGTCGCTT
CTCGAGCTGCCATTCGCCATCTCCGGGTCCGGTTCAGTGTACGCGTTGGG
CTACTGTGACGACCACCTCCGACCTGGACTAGGAAGGGACGAGTGCGTGC
TACACGTGCAGAAGGCGTTAGAGATGGCGCTCAGCCGTGACGGGGCCTCG
GGAGGTATCATACGGATGTGCGTCGCAACCAGGGCTGGGGTGGAACGGTG
GACTGTTGCCCCGGGCCTGCTCCAGCAACGGCGGGAGGCGGGGAGGACAC
CGGGCGACGGTGGCGGCTGAGGACGAGTGCGTGCTACACGTGCAGAAGGC
GTTAGAGATGGCGCTCAGCCGTGACGGGGCCTCGGGAGGTATCATACGGA
TGTGCGTCGCAACCAGGGCTGGGGTGGAACGGTGGACTGTTGCCCCGGGC
CTGCTCCAGCAACGGCGGGAGGCGGGGAGGACACCGGGCGACGGTGGCGG
CTGA
back to top