mRNA_F-serratus_M_contig992.21217.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig992.21217.1
Unique NamemRNA_F-serratus_M_contig992.21217.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig992.21217.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig992contigF-serratus_M_contig992:158925..164247 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1230
Cds size1230
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig992.21217.1prot_F-serratus_M_contig992.21217.1Fucus serratus malepolypeptideF-serratus_M_contig992 158925..164247 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932788.7404826-CDS-F-serratus_M_contig992:158924..1592931622932788.7404826-CDS-F-serratus_M_contig992:158924..159293Fucus serratus maleCDSF-serratus_M_contig992 158925..159293 -
1690964476.207636-CDS-F-serratus_M_contig992:158924..1592931690964476.207636-CDS-F-serratus_M_contig992:158924..159293Fucus serratus maleCDSF-serratus_M_contig992 158925..159293 -
1622932788.7622957-CDS-F-serratus_M_contig992:159644..1600611622932788.7622957-CDS-F-serratus_M_contig992:159644..160061Fucus serratus maleCDSF-serratus_M_contig992 159645..160061 -
1690964476.220253-CDS-F-serratus_M_contig992:159644..1600611690964476.220253-CDS-F-serratus_M_contig992:159644..160061Fucus serratus maleCDSF-serratus_M_contig992 159645..160061 -
1622932788.7829976-CDS-F-serratus_M_contig992:160319..1607121622932788.7829976-CDS-F-serratus_M_contig992:160319..160712Fucus serratus maleCDSF-serratus_M_contig992 160320..160712 -
1690964476.2329664-CDS-F-serratus_M_contig992:160319..1607121690964476.2329664-CDS-F-serratus_M_contig992:160319..160712Fucus serratus maleCDSF-serratus_M_contig992 160320..160712 -
1622932788.80026-CDS-F-serratus_M_contig992:164196..1642471622932788.80026-CDS-F-serratus_M_contig992:164196..164247Fucus serratus maleCDSF-serratus_M_contig992 164197..164247 -
1690964476.2478907-CDS-F-serratus_M_contig992:164196..1642471690964476.2478907-CDS-F-serratus_M_contig992:164196..164247Fucus serratus maleCDSF-serratus_M_contig992 164197..164247 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig992.21217.1

>prot_F-serratus_M_contig992.21217.1 ID=prot_F-serratus_M_contig992.21217.1|Name=mRNA_F-serratus_M_contig992.21217.1|organism=Fucus serratus male|type=polypeptide|length=410bp
RLHLICQSTAPIEPGIYVAPNIAHPTQRTTEIYKCPGVMTNRARGRTAGL
RKHACEFIGTSARCCCCSGATSPQKLEGPLPKAVGDDDFKSPEAGLTWTS
SPASPDTAPAIDLEALKTYIPEGSVYLWAAMIDGATATDAIGGWIVLMAQ
ISCYILLLANSSKRTLADLRGDSIVHVPIENDIGNFSTIIIDGTTFIETG
HSSEPLSYALTSISAAVYLVLTFAAGDLRAALALLQTRTLYNMILGAAIL
ASFVLLVVSSLSVLFFFANDNSSFIVGAATVLFISDLDEKLWSALRRVST
NNRLFWCVEAFAISLVLAIAGITWFGNTVATSAGGIELLRIPTTENNVAI
VFTVGFVWLIAPIGATVGAWEVALLLQYIADRHSNEKATSPRNLGNFLVV
EILAMCLILG
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mRNA from alignment at F-serratus_M_contig992:158925..164247-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig992.21217.1 ID=mRNA_F-serratus_M_contig992.21217.1|Name=mRNA_F-serratus_M_contig992.21217.1|organism=Fucus serratus male|type=mRNA|length=5323bp|location=Sequence derived from alignment at F-serratus_M_contig992:158925..164247- (Fucus serratus male)
CGTCTACATCTAATCTGTCAAAGCACCGCGCCAATCGAGCCTGGAATCTA
TGTGAGTCAGTCGTGGGTTATGAAGTGTAAATACTTGAGCGAGGGGGGCC
AGCATGACGTCGATCGATCATTAAACGACCGTCGTCGTCGTGTCGCCGTA
TTGGAATACACTTGGTGCGTGTAATAATTTTCGCACAACTCCACCCAACC
CAGCCCTGCCATGATATTAACATTATGTAGTACATAATGTATAGTCATTC
TACGCTACTTGCATTGGTTCTCTTAATAATAATGGAATCAAGGGTTGTTA
CAAAACCCTCGGATACGGGGCGATAAAGGAAACGCACTCTCCTTACAGCT
CTTCTGTAACCCCCGCGGCTTGGCGTCCCTTCTGTGCGTCCTTGTTGTCG
CCTCGCTAGCCTCGGGCGCCATCTGCTGCTGTTGTGTCAACACTCCATCG
ACGACGCTTTTCTGCTCCTGCTGTTTATGCCTGACTCTCTTACGCTTCCT
ACCTACTGTAGTTTAGTGGTATAAATACTATTATGGCAGATACTCGCGCG
GCATCACACCTTCTCCTCCGCTCTTGTTCCCGCCCTTGCCTTCCCGACCC
TCGGTTTTGATCCTCACCGAGGTGCGACGTACTCGTTCGAGAGCGGGGTC
TTAAAGTTTTTGCTGCAGATATCGTTGTTGGCGTCACTCGCTCTCTGGCG
CCCCCTGGCCGACTCTACGAGTAATATAGCCTGACAAGTCCCTGGGCTAT
CTCCCCTCATCCCCCCTCTCCTCGTTCTCATTTCCGTCCCTATCGCTCCG
GTGGTCTTGCTCTACTTCCTATCCCTCCGGTGGCCTCGCTCAATTTCTCG
CATATGGTCATACAGGTAGCCATATCTTGCGACCAGACCAGAGCTTTCGA
TTGCCTGCAAGCAAGCGTCACCCCTTGTCTACATAGATGCTGGCATTGTG
CGCAGAACGACTGTACACTAGTGAATTACTAGGCGCGTTTTCTTCAAATA
CGCAGGTTTACACGTACGTGTACATATATCTATACTTGTATTGTAAAGTA
TAACGATAGGTCTCTCCCCGACAATTTACGGTTGATCCAACAAGTTCCAT
ATTTTGTTGTGTTTGGCGGCCTCGCATGGTGATTAATATAAGTGTGCAGT
ATAACGGTGGGCTTGTAGTGTTTTCGTCTTTACGTAATAGTATATTATTA
CTACCATGTTTGATGATGTACTACATTATTTATTTATTTTGCTGTTTTTC
TGGTATCCCCGCAAGCATGGCGATTAATGTAAGTAAGTGTACAGGAGTCT
TAGTATAACGGTGGGTTTCTCCCCGACATTATACTGTTGACTCAATGTTC
TCTGCATTGGGGAACCCATTTGAATGCCATGAAGAGGTTTTGTATTTGCA
GCGTATGATCCCACCTTAACATTTTGACATTTTTCCCCTCCTGACTGGGG
GATGCTCAGAAAGTATAGGCGCGTCCTGATTTTTCTTTAAATACTAAAAT
ACATGTTTAGTCTATTAATAGAGTAGTTACGGATGAACAAAGTCTCTGCT
TCAACAACCAACCGCCAAGTAATTGTTATTTTCGCTTTTTATTTCCTTTT
TTTTTAATTAATTTATAAAAATACACAACGCCATCGAAGCCAACAAAGCA
GCGGCAGCTTGGTGCAAAGAAAAAGCTGCGCAAGTGGAGGGAGCAACGGC
GAACGCGGCCATTGTCTTGAACCTATATATATGTCTGTAGTTTTGTGGTG
GTGTACAGTATATGGATGTGTCGAACTGCTGTTTGGCAGAAGTTGCTGTG
GACTTGCGTTCATGTGACAATATTATTCCGTACGAAACCGTAGTTTGTAA
TGGGAGGGGGGTTCGTTAACGGCTTTGGTCTGGCGATGAAGCAGTTGACA
TCGGAGGGCGTAGCTCTTGCTGGCAATGAAGCAGTTCGCATCGGGGGGCG
TAGCTTTTGCTTTTGATCGTTGCCTGTTGACTGCATATGTCTGTATGTGA
TCCGAACACTGCCTTTTCTTGTGTTCTCCGGAATATTGTACTGTACTGTA
CTGTACTGTACTGTATTGTACTGTATTTCATATTTAAGTTCGAGGTCTGG
CGATTTTCGTGTTTTGTGAACGCACTGGCATCGCAACACCACACGCACGC
GGGAGTAACAAAAATATATAAAATATAAAAAATGTACCAGACAGAGTGGC
CGATTGATATCCAAAAAATACCGTGCATTACCGTGGGGACTGAGTACCAC
GGTATCATATACGGGAGTGGCCGATTACAACCCAAAAAATGCTGTTCATT
ACCGTGGGGGCTGAGTGCCACGGTAACACGTACCAGAGTGGCCGATTACC
GGTGCATTACCATAGATGGCGGCTGAATATCGCGGTTAATGTTACCAACC
TTAAAAATCGTCACCGAAAAGAGCCCTGTTTTTTTTTCCCCTTATGACCA
CGGGCTTGATTTTTGAATCATTAGCTTATTATGTGAGAATTCAATTACAA
AAATCAAGTACTATAATACGTACCAGGTATAATTGCAGTATCATAGTGTA
CTTCAGTCTTTACCAAGAGGATGTTATGTGTTTCGTAGCTCAAACTCTTG
CTTGCTTTATTACGTACTACTAGGTCTACCACAAAATTTAAATGGTTGAA
AAATAACGTCATTGTTTAATATGTACTACGTACTATACATTGTTTTTGTT
TTGTTAGGCGCCCCTGAATGGCGATTAATGTTTATGTACAGTATAACATT
GGGCTTCTCCCGGACATTGTACTGTTGACCCAATGTTGCTACCGTCGGGG
AGCCCGTTTAAAATGCCATAAATAAGAGGTTTTGTCTTTGCGGCCTATTA
TCCCACCTAAACGTTTTTCGTGACTGAGGGATGATGATGCTCAGAATGTC
TAGATGCATTCATATTTTTCTACTGTAAGTCCCTATAACCATATTGTTCG
ATGGCAGTATTATCTTATATTATTACTGAAAAACTATGTTTGTGGGTGCC
GGAATCACGAATAAACTATTTAATTATTTATGTGCTACATTGTTGTGAAT
TGTTTGGTATCCCTGCATGGCGGTTAATGTAAGAAGTGTACATTATAGCG
GTGGGCTTCTCTCCGACCTTATACTGTTGACCCATTATTACTACCATCGA
GGAACCCTTTTAAACGCCATGTAGAGGATTCGTCTTTGCAGCCTGTGATC
CCACCTAGACGTTTCGACACCCCCCCCTAACTTGGGGATGCTCGGGAGGT
ATAGATGCGTTCAGATTTTTCTTTAAACAGTAGTTGATGAACATGCACAG
ATATGTTAGAGCAGCCATGGTTGTTTGGTGGAGTAGACGCGGTGCTTGCC
AACCCGATCTAATTATCATCGCTTGCGATATGTGGAAATGCAGCGCGGCA
ATGTACCCAACACCGACCAGTTCGTCGTACTTGTAGCTGGGCTTATCCTA
ACTCTCGCCTCCAATCCTTTACCTACTGCACAGCTGGAATGTGGGCCATC
TCGACTAAACTCTGCACATCGTGCTGCTTGCACAGGTAGCTCCGAATATT
GCCCATCCCACTCAGCGCACAACCGAGATCTACAAGTGTCCGGGAGTAAT
GACAAACCGCGCCCGAGGGAGAACTGCGGGTCTTCGCAAGCACGCTTGTG
AATTCATTGGCACGTCTGCACGATGTTGCTGTTGTAGTGGGGCCACCTCC
CCGCAGAAACTTGAAGGACCTCTTCCGAAAGCTGTGGGAGACGACGATTT
CAAGTCCCCTGAAGCGGGACTTACGTGGACTTCCTCTCCTGCCTCCCCTG
ATACCGCTCCTGCCATAGACCTCGAGGCGCTAAAAACGTACATTCCTGAG
GGGTCTGTGTACCTGTGGGCTGCGATGATCGACGGGGCAACTGCTACCGA
TGCGATAGGGGGATGGATTGTTCTTATGGTGAGGGGGCGTGCGTCGAGTT
TCTAACCATCGATCAATCAACAATCACCTCAAGAATAACTTTCTAATTAC
TATATGGTCTCTTTGTCAAGCATGGTTGAAATAATAAGCCAAATTGAATC
GACAGAAGTGTGCAAAAGGGACTACTAGCGATCGTGTTAAAATATGCGGC
ACTTTGTTATGCAATCAAAAACTGGCCCCGATTATCGAAGGTTTCGTGTT
CAAGCATATCCCCCGATCGGACCGCTTCGCGAACAGGCCCAGATATCGTG
CTACATCCTCCTCCTCGCCAACTCTTCTAAGAGAACCTTGGCGGATTTAC
GCGGGGACTCAATCGTGCATGTGCCGATCGAGAATGACATTGGAAACTTC
TCGACCATCATTATCGACGGTACAACATTTATCGAAACAGGACATTCTTC
GGAGCCACTCTCCTACGCGCTTACTTCAATTTCTGCTGCGGTGTACCTGG
TACTGACGTTCGCGGCCGGAGACCTGCGCGCGGCGCTGGCTCTATTACAA
ACCCGTACGCTGTACAACATGATCCTGGGTGCTGCTATTCTAGCTTCGTT
CGTGCTGCTGGTCGTTTCGTCGTTGAGCGTTCTCTTTTTCTTCGCCAACG
ACAACTCATCTTTCATCGTAGGGGCGGCCACGGTACTTTTCATCAGCGAT
TTGGTGAGAAAATAGGGTCATTACATCAACGTGTCGCCCAAGGCTTGTTT
AGGGAAATGCGGTGGTTATTAGGTTGGATGAAAGTTCGATTATATATTTC
AACATTGAACCTATCAAGAACTCAATCTTCGCAATTACATGAGTGTTGGG
AGATCGGCGCGATTTGACCACCAAACACGTTGCATTGCGTTCACCAGTCA
GTTCCCATTTAGTCTATTAACTGATGCATTGAGTATAGCATTTGCTCCGT
CTGGTGGTTACTATACTACTCTTGACGCCGTCGATCTTAGTGTCGTGTTC
TTTCAAAGACATGACTGAGCATAATAATCAAATATTTATTTAACAACCCT
TCAGGACGAGAAACTGTGGAGCGCTCTGAGGAGAGTAAGCACAAACAACC
GCCTCTTCTGGTGTGTGGAAGCTTTCGCCATAAGCCTGGTCCTTGCCATC
GCAGGAATCACGTGGTTCGGCAATACTGTGGCTACAAGTGCTGGCGGGAT
CGAGTTGTTAAGGATTCCTACAACTGAAAACAATGTTGCGATTGTCTTTA
CGGTAGGATTTGTTTGGCTGATTGCCCCTATTGGGGCCACGGTCGGGGCC
TGGGAAGTCGCCTTGCTTCTCCAGTACATCGCTGATAGGCACAGCAACGA
GAAGGCAACATCTCCTCGAAACCTCGGGAATTTCCTCGTCGTGGAGATTT
TGGCCATGTGTTTGATTTTGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig992:158925..164247-

>mRNA_F-serratus_M_contig992.21217.1 ID=mRNA_F-serratus_M_contig992.21217.1|Name=mRNA_F-serratus_M_contig992.21217.1|organism=Fucus serratus male|type=CDS|length=2460bp|location=Sequence derived from alignment at F-serratus_M_contig992:158925..164247- (Fucus serratus male)
CGTCTACATCTAATCTGTCAAAGCACCGCGCCAATCGAGCCTGGAATCTA
TCGTCTACATCTAATCTGTCAAAGCACCGCGCCAATCGAGCCTGGAATCT
ATGTAGCTCCGAATATTGCCCATCCCACTCAGCGCACAACCGAGATCTAC
AAGTGTCCGGGAGTAATGACAAACCGCGCCCGAGGGAGAACTGCGGGTCT
TCGCAAGCACGCTTGTGAATTCATTGGCACGTCTGCACGATGTTGCTGTT
GTAGTGGGGCCACCTCCCCGCAGAAACTTGAAGGACCTCTTCCGAAAGCT
GTGGGAGACGACGATTTCAAGTCCCCTGAAGCGGGACTTACGTGGACTTC
CTCTCCTGCCTCCCCTGATACCGCTCCTGCCATAGACCTCGAGGCGCTAA
AAACGTACATTCCTGAGGGGTCTGTGTACCTGTGGGCTGCGATGATCGAC
GGGGCAACTGCTACCGATGCGATAGGGGGATGGATTGTTCTTATGGTAGC
TCCGAATATTGCCCATCCCACTCAGCGCACAACCGAGATCTACAAGTGTC
CGGGAGTAATGACAAACCGCGCCCGAGGGAGAACTGCGGGTCTTCGCAAG
CACGCTTGTGAATTCATTGGCACGTCTGCACGATGTTGCTGTTGTAGTGG
GGCCACCTCCCCGCAGAAACTTGAAGGACCTCTTCCGAAAGCTGTGGGAG
ACGACGATTTCAAGTCCCCTGAAGCGGGACTTACGTGGACTTCCTCTCCT
GCCTCCCCTGATACCGCTCCTGCCATAGACCTCGAGGCGCTAAAAACGTA
CATTCCTGAGGGGTCTGTGTACCTGTGGGCTGCGATGATCGACGGGGCAA
CTGCTACCGATGCGATAGGGGGATGGATTGTTCTTATGGCCCAGATATCG
TGCTACATCCTCCTCCTCGCCAACTCTTCTAAGAGAACCTTGGCGGATTT
ACGCGGGGACTCAATCGTGCATGTGCCGATCGAGAATGACATTGGAAACT
TCTCGACCATCATTATCGACGGTACAACATTTATCGAAACAGGACATTCT
TCGGAGCCACTCTCCTACGCGCTTACTTCAATTTCTGCTGCGGTGTACCT
GGTACTGACGTTCGCGGCCGGAGACCTGCGCGCGGCGCTGGCTCTATTAC
AAACCCGTACGCTGTACAACATGATCCTGGGTGCTGCTATTCTAGCTTCG
TTCGTGCTGCTGGTCGTTTCGTCGTTGAGCGTTCTCTTTTTCTTCGCCAA
CGACAACTCATCTTTCATCGTAGGGGCGGCCACGGTACTTTTCATCAGCG
ATTTGGCCCAGATATCGTGCTACATCCTCCTCCTCGCCAACTCTTCTAAG
AGAACCTTGGCGGATTTACGCGGGGACTCAATCGTGCATGTGCCGATCGA
GAATGACATTGGAAACTTCTCGACCATCATTATCGACGGTACAACATTTA
TCGAAACAGGACATTCTTCGGAGCCACTCTCCTACGCGCTTACTTCAATT
TCTGCTGCGGTGTACCTGGTACTGACGTTCGCGGCCGGAGACCTGCGCGC
GGCGCTGGCTCTATTACAAACCCGTACGCTGTACAACATGATCCTGGGTG
CTGCTATTCTAGCTTCGTTCGTGCTGCTGGTCGTTTCGTCGTTGAGCGTT
CTCTTTTTCTTCGCCAACGACAACTCATCTTTCATCGTAGGGGCGGCCAC
GGTACTTTTCATCAGCGATTTGGACGAGAAACTGTGGAGCGCTCTGAGGA
GAGTAAGCACAAACAACCGCCTCTTCTGGTGTGTGGAAGCTTTCGCCATA
AGCCTGGTCCTTGCCATCGCAGGAATCACGTGGTTCGGCAATACTGTGGC
TACAAGTGCTGGCGGGATCGAGTTGTTAAGGATTCCTACAACTGAAAACA
ATGTTGCGATTGTCTTTACGGTAGGATTTGTTTGGCTGATTGCCCCTATT
GGGGCCACGGTCGGGGCCTGGGAAGTCGCCTTGCTTCTCCAGTACATCGC
TGATAGGCACAGCAACGAGAAGGCAACATCTCCTCGAAACCTCGGGAATT
TCCTCGTCGTGGAGATTTTGGCCATGTGTTTGATTTTGGGGGACGAGAAA
CTGTGGAGCGCTCTGAGGAGAGTAAGCACAAACAACCGCCTCTTCTGGTG
TGTGGAAGCTTTCGCCATAAGCCTGGTCCTTGCCATCGCAGGAATCACGT
GGTTCGGCAATACTGTGGCTACAAGTGCTGGCGGGATCGAGTTGTTAAGG
ATTCCTACAACTGAAAACAATGTTGCGATTGTCTTTACGGTAGGATTTGT
TTGGCTGATTGCCCCTATTGGGGCCACGGTCGGGGCCTGGGAAGTCGCCT
TGCTTCTCCAGTACATCGCTGATAGGCACAGCAACGAGAAGGCAACATCT
CCTCGAAACCTCGGGAATTTCCTCGTCGTGGAGATTTTGGCCATGTGTTT
GATTTTGGGG
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