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Homology
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: A0A6G1C6J6_9ORYZ (Cytochrome b-c1 complex subunit 6 n=5 Tax=Oryza TaxID=4527 RepID=A0A6G1C6J6_9ORYZ) HSP 1 Score: 64.3 bits (155), Expect = 1.970e-9 Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 201
DEE VDP + E C KP C + EY+ C+ RVEK G C +FDY SC+DKCVAPK+++ LK
Sbjct: 8 DEELVDPKKYLEERC---KPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCVAPKLLEKLK 74
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: UPI000B795C7E (cytochrome b-c1 complex subunit 6-like isoform X1 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B795C7E) HSP 1 Score: 64.7 bits (156), Expect = 2.040e-9 Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDR--VEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 201
DEEPVD + E C KP C + EY+AC+ R V++ G C +FDY SCVDKCVAPK+ LK
Sbjct: 21 DEEPVDQKKYLEESC---KPKCVKPLLEYEACVKRIKVDESGHKHCTGQYFDYWSCVDKCVAPKLFSKLK 87
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: UPI000B79749D (cytochrome b-c1 complex subunit 6-like isoform X2 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B79749D) HSP 1 Score: 64.7 bits (156), Expect = 2.040e-9 Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDR--VEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 201
DEEPVD + E C KP C + EY+AC+ R V++ G C +FDY SCVDKCVAPK+ LK
Sbjct: 21 DEEPVDQKKYLEESC---KPKCVKPLLEYEACVKRIKVDESGHKHCTGQYFDYWSCVDKCVAPKLFSKLK 87
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: A0A6P4AWN7_ZIZJJ (Cytochrome b-c1 complex subunit 6 n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4AWN7_ZIZJJ) HSP 1 Score: 63.9 bits (154), Expect = 2.350e-9 Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 1
Query: 1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDRVE--KKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 201
DEEPVD + E C KP C + EY+AC+ R++ + G C +FDY SCVDKCVAPK+ LK
Sbjct: 3 DEEPVDQKKLLEESC---KPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCVDKCVAPKLFSKLK 69
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: V4V6M9_CITCL (UCR_hinge domain-containing protein n=4 Tax=Citrus TaxID=2706 RepID=V4V6M9_CITCL) HSP 1 Score: 65.1 bits (157), Expect = 2.400e-9 Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 201
DEE DP + E C KP C ++ EY+AC+ R+E G+ C +FDYLSCVDKCVAPK+ LK
Sbjct: 39 DEEIADPKKYLEEAC---KPKCVKSLIEYEACVKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFIQLK 105
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 63.9 |
Seed ortholog evalue | 2.1e-08 |
Seed eggNOG ortholog | 325452.fgenesh_scip_prom.46568.9170 |
Preferred name | UQCRH |
KEGG rclass | RC00004,RC00014,RC00017,RC02950 |
KEGG ko | ko:K00416,ko:K01897,ko:K08730 |
KEGG TC | 4.C.1.1 |
KEGG Reaction | R01280,R07376 |
KEGG Pathway | ko00061,ko00071,ko00190,ko00564,ko01100,ko01110,ko01212,ko02024,ko03320,ko04146,ko04216,ko04260,ko04714,ko04920,ko04932,ko05010,ko05012,ko05016,map00061,map00071,map00190,map00564,map01100,map01110,map01212,map02024,map03320,map04146,map04216,map04260,map04714,map04920,map04932,map05010,map05012,map05016 |
KEGG Module | M00086,M00152 |
Hectar predicted targeting category | no signal peptide or anchor |
GOs | GO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008121,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016491,GO:0016679,GO:0016681,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034399,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045275,GO:0045333,GO:0046034,GO:0046483,GO:0051259,GO:0051291,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070069,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204 |
EggNOG free text desc. | Ubiquinol-cytochrome C reductase hinge protein |
EggNOG OGs | 3QGND@4776,KOG4763@1,KOG4763@2759 |
Ec32 ortholog description | ubiquinol cytochrome c reductase subunit 6 |
Ec32 ortholog | Ec-21_004500.1 |
EC | 2.7.8.29,6.2.1.3 |
COG Functional cat. | C |
Best tax level | Peronosporales |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko00002,ko01000,ko01004,ko04147 |
Exons | 3 |
Model size | 1668 |
Cds size | 132 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932785.230811-UTR-F-serratus_M_contig99:841220..842684 | 1622932785.230811-UTR-F-serratus_M_contig99:841220..842684 | Fucus serratus male | UTR | F-serratus_M_contig99 841221..842684 - |
1690964474.296126-UTR-F-serratus_M_contig99:841220..842684 | 1690964474.296126-UTR-F-serratus_M_contig99:841220..842684 | Fucus serratus male | UTR | F-serratus_M_contig99 841221..842684 - |
1622932785.3031826-UTR-F-serratus_M_contig99:844585..844657 | 1622932785.3031826-UTR-F-serratus_M_contig99:844585..844657 | Fucus serratus male | UTR | F-serratus_M_contig99 844586..844657 - |
1690964474.3548737-UTR-F-serratus_M_contig99:844585..844657 | 1690964474.3548737-UTR-F-serratus_M_contig99:844585..844657 | Fucus serratus male | UTR | F-serratus_M_contig99 844586..844657 - |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622932785.2494357-CDS-F-serratus_M_contig99:842684..842717 | 1622932785.2494357-CDS-F-serratus_M_contig99:842684..842717 | Fucus serratus male | CDS | F-serratus_M_contig99 842685..842717 - |
1690964474.3122642-CDS-F-serratus_M_contig99:842684..842717 | 1690964474.3122642-CDS-F-serratus_M_contig99:842684..842717 | Fucus serratus male | CDS | F-serratus_M_contig99 842685..842717 - |
1622932785.2671604-CDS-F-serratus_M_contig99:843100..843184 | 1622932785.2671604-CDS-F-serratus_M_contig99:843100..843184 | Fucus serratus male | CDS | F-serratus_M_contig99 843101..843184 - |
1690964474.3299494-CDS-F-serratus_M_contig99:843100..843184 | 1690964474.3299494-CDS-F-serratus_M_contig99:843100..843184 | Fucus serratus male | CDS | F-serratus_M_contig99 843101..843184 - |
1622932785.2837086-CDS-F-serratus_M_contig99:844570..844585 | 1622932785.2837086-CDS-F-serratus_M_contig99:844570..844585 | Fucus serratus male | CDS | F-serratus_M_contig99 844571..844585 - |
1690964474.3421044-CDS-F-serratus_M_contig99:844570..844585 | 1690964474.3421044-CDS-F-serratus_M_contig99:844570..844585 | Fucus serratus male | CDS | F-serratus_M_contig99 844571..844585 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig99.21202.1 >prot_F-serratus_M_contig99.21202.1 ID=prot_F-serratus_M_contig99.21202.1|Name=mRNA_F-serratus_M_contig99.21202.1|organism=Fucus serratus male|type=polypeptide|length=44bp
MSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK* back to topmRNA from alignment at F-serratus_M_contig99:841221..844657- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_F-serratus_M_contig99.21202.1 ID=mRNA_F-serratus_M_contig99.21202.1|Name=mRNA_F-serratus_M_contig99.21202.1|organism=Fucus serratus male|type=mRNA|length=3437bp|location=Sequence derived from alignment at F-serratus_M_contig99:841221..844657- (Fucus serratus male) GACGAGGAGCCGGTAGATCCTTTGACGGGCATCCGAGAAGGATGCAGCGA
GACCAAGCCGTGCGCGTCTACCATGTCCGAGTACAAGGTGCAGTTTTGAT
ATAGAATAAGCTCTCCCTCTATGGCGCGCCTCCAGCCAGATTGTTGTTCA
CAACAGTGGAACTCCAACATGTGTTTTTGTTTTGTCGTGTGCTTTGTTGA
GCAATCTCTCGCCCACCGATCATTCAAACCTTACCTTTTCCCCTCTGTAG
TAGGTAACCTGCATACCTGCTAGCGCGGAAGTCGTGAGTTCGATTCTTAG
CTTAAGCAGAATTTATGTTCTTTCTTTCGTAACGGAAAGCGTGAGAACGT
GAGTAAGTGAAATTCAACCATTGGTTGACGAGTTGTAAGAGTGCTGAACT
TGCATCGCGATAAAAACTAGTAGGGTAAGGCGTGAACCGGGAGAGATAGG
AAGATCCTTTGTGACCACAGGCAGGATGGTAATTGGAGGTCCATCGGCTA
TAAGTGTGTGGTGAGTTTTAGCGGGGCTTCACAGCATATTTTAAACCTTT
TTTTATTGGGGGCGTTTATTACTTCTTGGTACAGCGGTGGCATAGATAGA
CCTTGAGGGGTTGTGTTGTCTGTGGGGCGCATGTTCTAGCTGCTGTTGTC
GTGTCGTTTTCATAGGGACATAAAAGTTGCAGTCAGTATTACATACTCTC
TCTGGGTAGAGCCTAATAGTGTTTCTGACCGGTGGCTTTCGCCACATGGG
TCATCGACGACGCTTTGTACACCACGCTGTCGGCGATCGGGACCGTTGAG
GGGATCGCGGTAGTATTGTTCTCTTCACGCGGTAACACCATTCCATTTAT
TGGGAGCATCCCAGTCTCAACCGTGTCGCGTTCCTTGCCCACGGAGAGCA
CCCTTGTCGCTGTAGTTCTTCAGTTGCGAGACCCATACGCTGAAAGGAAG
AATCACCAAAGACAACAACTTTTGCCGCGCCCTGGACCTCATGTGTACGT
CGTGGCTCGGTGGTGGCCGTGAGCGTGGTCGCGCGTTGTTGACGCGTGTT
CGGTACCCATCTGCACTTGGCGCCATCGAGCGCAACGCGTTTGTAGCTCA
GGAAGTATGACCTCATTCCTTCTTGTTGGCCAGTACCAGGTAGGGTTTAA
TTTCGCTATCTACTGAGCCAAGAAACGGGGTTCGTTGAGTTTGTTGAGAG
TTTTGCTTTTCTCCGACTTTCGACAGGGCGAGAGGTGGCTTGAGAATCTT
CTTTTCTTCAGCTTGCGCGCATCTTGGAGAGTCTCTTTACCATTTCTATC
CTTCGATCATGTTAATTACTTCTGCGATAAAATAGAACATACTGCGATTT
AGTAGTGGGTGATGCGGCGTGCTAGGCACTGCTGTGACGCCAGTCGACAC
GCTGGCGATTACCCTGTCCTGCTCGCGCACCCCGGCTACGACCGCTCTTT
CGCGTCGCCCGTTCTGCGCGCAGGCGTGCATTGATCGAGTTGAGAAAAAG
GGATTTGGAACGTGCGAGCCATGGTTCTTCGACTACCTCTCGTGTGTCGA
CAAATGTGTGAGTGCATGCATGCGTAGATAATACGTTCGAGTGATCCCTC
TACTTCGCGTACGTGAAATAGCTATTGATAGACATACCTTGTGCTATTAA
TAGTGACACTGACCGCTGCTTGACAAATATTCTCTGAGAATAAACTCCAA
GTGTCGAAGAAGACGCGGAGAACGCGGCAAATCCCTTTCATGTCAACGAA
AAATATTCTCGACGACGTTATTCAATAACACCCGACGAAAAGATGGACGA
ACACTACAGTAAAGACGCACATCCCGCAGGATTTTTTTAATTATGCACGA
GCTCCCTCGGAGGCATAGCTCACCCCCCCCCCTCCCCCCGACCCTGAATT
TTCCATTTTGATTGCTCTTTCCCTCTATGGTGCCCCTCAGGTGGCTCCCA
AGATTATGAAAGTTCTAAAGTAACGCGGGCTTTTTCGGGTGAATGTACGG
TGGTAACTCACTCGGAACTGGCCATGTTAGGGGCGTCTCGGTAGGGTAGT
AAGCGTTTTGCGTCAGGGGTTTCATGTCGAGGTTTCCGGCATCGTTGTTA
GAGTGCCGTCGAGTTGGAGGGCTGGGGGTGTTCGCTGGACGGCGGGAGAG
AGGGAAGATGGGGCGGGGGAATTTCCGGGAAATATCGTGGAAATTTAAGA
AATGGGCCACGCCGCCGTTCAGTGCCGGCCTCTCGAGCGGGCTGCTCGTG
ATGCAGGGTACGTGTTAGGTGGGTGAGACCGGGAGATGCTTTTGCGGATT
CGCGAGTGCTCATTTACATGTTACTCGGTCCTTTTCGTTTCCCGTCGGTG
GTTGCTGTCGTCGAGAAAACACGCACGGCAAGCCGAGCAAAGGAACCTTT
TTCCCCCCACATGAATGCATTCAACTTACAAGGTTTAGAGGGGTAAGAGA
GCAAAGGTGGAGACGGTCGAGAAAGTATGAGGTGCACTAGGTTGGTCGAT
GGAACCGCCCCCGCTGGTTTGTCCTCGTGGGCGCGTGGCGTTCCGTTCGA
CTCCTTCCTCCTTCCTCGCGGCTTTCATAGACACACCCTCTCGAGTTTTT
CTGCGACGAGTCGCTTTGTGATCAGAGTCCCGGGACGTTCTCAAATCGAG
ACAACCGTTGGGGATTGATTGGAGTACCGCAAAAAGGACGACGTGGACAT
CTCCTAGCGTGAGCGGTACGCTTTTTCAACCGCTCAGCCAGGAAAAAACC
TGCATCCTAAGTCAGTTGGAGGATTTTGGTGTATACTGTATGTACGTGGT
GTCCCCTCCCCATCTTGAACCTCGATCGCATCCATGATGAGTCTCAATAA
TCAGGTATTACTTCGAGCTTTCCCGCAGATTACAGCACGAGTAAGACTCT
GGACATTTATCTTCCATTTGAGAGGAAAGTTGGGGAGAGATCGCCCTCCA
TTTGTCCTACTGTCGACGCAAATATGGAGACCTTGGGACGACCTAACGTT
CTTGCATTTCTGGAGTCGAGTACGGAAGGGAATATAGGCGAGTAGCTCCC
GCGAGGCTTTGTGGGCAATTCCGCCAGGCTTTGTACGGAAGGGTGCTAGA
AAACTTCCCAGCATGTACTACATACTTCATATATGATCTTCCCTCACATG
AAGTGTACTGGGATGAACACATAATTCTCCACAAAAGTAAGCGTGTACGT
CTACGAGCGCTACATCTGCTATATATTGTAAATTGCGCACACCTGAAATC
AACTGAGTCAGTCAGCACAGCACCTGTAGAATTTTAAAACCGCCAAAGAG
CTATAGCTCAGGATAGAACAAAGTTCAAATGCCATGAAGAGGTTTTGTGT
TTGCAGCCTATGATCCCACCCAAACGTTTTGACAATTTTCCCCCTGACTG
GGGGATGCTCAGGTCTAGATACGTTTAGATTTTTCTT back to topCoding sequence (CDS) from alignment at F-serratus_M_contig99:841221..844657- >mRNA_F-serratus_M_contig99.21202.1 ID=mRNA_F-serratus_M_contig99.21202.1|Name=mRNA_F-serratus_M_contig99.21202.1|organism=Fucus serratus male|type=CDS|length=264bp|location=Sequence derived from alignment at F-serratus_M_contig99:841221..844657- (Fucus serratus male) ATGTCCGAGTACAAGATGTCCGAGTACAAGGCGTGCATTGATCGAGTTGA GAAAAAGGGATTTGGAACGTGCGAGCCATGGTTCTTCGACTACCTCTCGT GTGTCGACAAATGTGCGTGCATTGATCGAGTTGAGAAAAAGGGATTTGGA ACGTGCGAGCCATGGTTCTTCGACTACCTCTCGTGTGTCGACAAATGTGT GGCTCCCAAGATTATGAAAGTTCTAAAGTAAGTGGCTCCCAAGATTATGA AAGTTCTAAAGTAA back to top
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