mRNA_F-serratus_M_contig99.21202.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig99.21202.1
Unique NamemRNA_F-serratus_M_contig99.21202.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: A0A6G1C6J6_9ORYZ (Cytochrome b-c1 complex subunit 6 n=5 Tax=Oryza TaxID=4527 RepID=A0A6G1C6J6_9ORYZ)

HSP 1 Score: 64.3 bits (155), Expect = 1.970e-9
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 201
            DEE VDP   + E C   KP C   + EY+ C+ RVEK   G   C   +FDY SC+DKCVAPK+++ LK
Sbjct:    8 DEELVDPKKYLEERC---KPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCVAPKLLEKLK 74
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BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: UPI000B795C7E (cytochrome b-c1 complex subunit 6-like isoform X1 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B795C7E)

HSP 1 Score: 64.7 bits (156), Expect = 2.040e-9
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDR--VEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 201
            DEEPVD    + E C   KP C   + EY+AC+ R  V++ G   C   +FDY SCVDKCVAPK+   LK
Sbjct:   21 DEEPVDQKKYLEESC---KPKCVKPLLEYEACVKRIKVDESGHKHCTGQYFDYWSCVDKCVAPKLFSKLK 87
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BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: UPI000B79749D (cytochrome b-c1 complex subunit 6-like isoform X2 n=1 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B79749D)

HSP 1 Score: 64.7 bits (156), Expect = 2.040e-9
Identity = 34/70 (48.57%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDR--VEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 201
            DEEPVD    + E C   KP C   + EY+AC+ R  V++ G   C   +FDY SCVDKCVAPK+   LK
Sbjct:   21 DEEPVDQKKYLEESC---KPKCVKPLLEYEACVKRIKVDESGHKHCTGQYFDYWSCVDKCVAPKLFSKLK 87
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BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: A0A6P4AWN7_ZIZJJ (Cytochrome b-c1 complex subunit 6 n=2 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P4AWN7_ZIZJJ)

HSP 1 Score: 63.9 bits (154), Expect = 2.350e-9
Identity = 33/70 (47.14%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:    1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDRVE--KKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 201
            DEEPVD    + E C   KP C   + EY+AC+ R++  + G   C   +FDY SCVDKCVAPK+   LK
Sbjct:    3 DEEPVDQKKLLEESC---KPKCVKPLLEYQACVKRIQGDESGHKHCTGQYFDYWSCVDKCVAPKLFSKLK 69
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BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: V4V6M9_CITCL (UCR_hinge domain-containing protein n=4 Tax=Citrus TaxID=2706 RepID=V4V6M9_CITCL)

HSP 1 Score: 65.1 bits (157), Expect = 2.400e-9
Identity = 34/70 (48.57%), Postives = 43/70 (61.43%), Query Frame = 1 
Query:    1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 201
            DEE  DP   + E C   KP C  ++ EY+AC+ R+E    G+  C   +FDYLSCVDKCVAPK+   LK
Sbjct:   39 DEEIADPKKYLEEAC---KPKCVKSLIEYEACVKRIEADDTGSKHCTGQYFDYLSCVDKCVAPKLFIQLK 105
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G1C6J6_9ORYZ1.970e-948.57Cytochrome b-c1 complex subunit 6 n=5 Tax=Oryza Ta... [more]
UPI000B795C7E2.040e-948.57cytochrome b-c1 complex subunit 6-like isoform X1 ... [more]
UPI000B79749D2.040e-948.57cytochrome b-c1 complex subunit 6-like isoform X2 ... [more]
A0A6P4AWN7_ZIZJJ2.350e-947.14Cytochrome b-c1 complex subunit 6 n=2 Tax=Ziziphus... [more]
V4V6M9_CITCL2.400e-948.57UCR_hinge domain-containing protein n=4 Tax=Citrus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig99contigF-serratus_M_contig99:841221..844657 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue2.1e-08
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.9170
Preferred nameUQCRH
KEGG rclassRC00004,RC00014,RC00017,RC02950
KEGG koko:K00416,ko:K01897,ko:K08730
KEGG TC4.C.1.1
KEGG ReactionR01280,R07376
KEGG Pathwayko00061,ko00071,ko00190,ko00564,ko01100,ko01110,ko01212,ko02024,ko03320,ko04146,ko04216,ko04260,ko04714,ko04920,ko04932,ko05010,ko05012,ko05016,map00061,map00071,map00190,map00564,map01100,map01110,map01212,map02024,map03320,map04146,map04216,map04260,map04714,map04920,map04932,map05010,map05012,map05016
KEGG ModuleM00086,M00152
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005750,GO:0005758,GO:0006091,GO:0006119,GO:0006122,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008121,GO:0008150,GO:0008152,GO:0009055,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016310,GO:0016491,GO:0016679,GO:0016681,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022607,GO:0022900,GO:0022904,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031970,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034399,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044877,GO:0045275,GO:0045333,GO:0046034,GO:0046483,GO:0051259,GO:0051291,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0070069,GO:0070469,GO:0071704,GO:0071840,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564,GO:1902494,GO:1990204
EggNOG free text desc.Ubiquinol-cytochrome C reductase hinge protein
EggNOG OGs3QGND@4776,KOG4763@1,KOG4763@2759
Ec32 ortholog descriptionubiquinol cytochrome c reductase subunit 6
Ec32 orthologEc-21_004500.1
EC2.7.8.29,6.2.1.3
COG Functional cat.C
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Exons3
Model size1668
Cds size132
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig99.21202.1prot_F-serratus_M_contig99.21202.1Fucus serratus malepolypeptideF-serratus_M_contig99 842685..844585 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932785.230811-UTR-F-serratus_M_contig99:841220..8426841622932785.230811-UTR-F-serratus_M_contig99:841220..842684Fucus serratus maleUTRF-serratus_M_contig99 841221..842684 -
1690964474.296126-UTR-F-serratus_M_contig99:841220..8426841690964474.296126-UTR-F-serratus_M_contig99:841220..842684Fucus serratus maleUTRF-serratus_M_contig99 841221..842684 -
1622932785.3031826-UTR-F-serratus_M_contig99:844585..8446571622932785.3031826-UTR-F-serratus_M_contig99:844585..844657Fucus serratus maleUTRF-serratus_M_contig99 844586..844657 -
1690964474.3548737-UTR-F-serratus_M_contig99:844585..8446571690964474.3548737-UTR-F-serratus_M_contig99:844585..844657Fucus serratus maleUTRF-serratus_M_contig99 844586..844657 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932785.2494357-CDS-F-serratus_M_contig99:842684..8427171622932785.2494357-CDS-F-serratus_M_contig99:842684..842717Fucus serratus maleCDSF-serratus_M_contig99 842685..842717 -
1690964474.3122642-CDS-F-serratus_M_contig99:842684..8427171690964474.3122642-CDS-F-serratus_M_contig99:842684..842717Fucus serratus maleCDSF-serratus_M_contig99 842685..842717 -
1622932785.2671604-CDS-F-serratus_M_contig99:843100..8431841622932785.2671604-CDS-F-serratus_M_contig99:843100..843184Fucus serratus maleCDSF-serratus_M_contig99 843101..843184 -
1690964474.3299494-CDS-F-serratus_M_contig99:843100..8431841690964474.3299494-CDS-F-serratus_M_contig99:843100..843184Fucus serratus maleCDSF-serratus_M_contig99 843101..843184 -
1622932785.2837086-CDS-F-serratus_M_contig99:844570..8445851622932785.2837086-CDS-F-serratus_M_contig99:844570..844585Fucus serratus maleCDSF-serratus_M_contig99 844571..844585 -
1690964474.3421044-CDS-F-serratus_M_contig99:844570..8445851690964474.3421044-CDS-F-serratus_M_contig99:844570..844585Fucus serratus maleCDSF-serratus_M_contig99 844571..844585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig99.21202.1

>prot_F-serratus_M_contig99.21202.1 ID=prot_F-serratus_M_contig99.21202.1|Name=mRNA_F-serratus_M_contig99.21202.1|organism=Fucus serratus male|type=polypeptide|length=44bp
MSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK*
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mRNA from alignment at F-serratus_M_contig99:841221..844657-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig99.21202.1 ID=mRNA_F-serratus_M_contig99.21202.1|Name=mRNA_F-serratus_M_contig99.21202.1|organism=Fucus serratus male|type=mRNA|length=3437bp|location=Sequence derived from alignment at F-serratus_M_contig99:841221..844657- (Fucus serratus male)
GACGAGGAGCCGGTAGATCCTTTGACGGGCATCCGAGAAGGATGCAGCGA
GACCAAGCCGTGCGCGTCTACCATGTCCGAGTACAAGGTGCAGTTTTGAT
ATAGAATAAGCTCTCCCTCTATGGCGCGCCTCCAGCCAGATTGTTGTTCA
CAACAGTGGAACTCCAACATGTGTTTTTGTTTTGTCGTGTGCTTTGTTGA
GCAATCTCTCGCCCACCGATCATTCAAACCTTACCTTTTCCCCTCTGTAG
TAGGTAACCTGCATACCTGCTAGCGCGGAAGTCGTGAGTTCGATTCTTAG
CTTAAGCAGAATTTATGTTCTTTCTTTCGTAACGGAAAGCGTGAGAACGT
GAGTAAGTGAAATTCAACCATTGGTTGACGAGTTGTAAGAGTGCTGAACT
TGCATCGCGATAAAAACTAGTAGGGTAAGGCGTGAACCGGGAGAGATAGG
AAGATCCTTTGTGACCACAGGCAGGATGGTAATTGGAGGTCCATCGGCTA
TAAGTGTGTGGTGAGTTTTAGCGGGGCTTCACAGCATATTTTAAACCTTT
TTTTATTGGGGGCGTTTATTACTTCTTGGTACAGCGGTGGCATAGATAGA
CCTTGAGGGGTTGTGTTGTCTGTGGGGCGCATGTTCTAGCTGCTGTTGTC
GTGTCGTTTTCATAGGGACATAAAAGTTGCAGTCAGTATTACATACTCTC
TCTGGGTAGAGCCTAATAGTGTTTCTGACCGGTGGCTTTCGCCACATGGG
TCATCGACGACGCTTTGTACACCACGCTGTCGGCGATCGGGACCGTTGAG
GGGATCGCGGTAGTATTGTTCTCTTCACGCGGTAACACCATTCCATTTAT
TGGGAGCATCCCAGTCTCAACCGTGTCGCGTTCCTTGCCCACGGAGAGCA
CCCTTGTCGCTGTAGTTCTTCAGTTGCGAGACCCATACGCTGAAAGGAAG
AATCACCAAAGACAACAACTTTTGCCGCGCCCTGGACCTCATGTGTACGT
CGTGGCTCGGTGGTGGCCGTGAGCGTGGTCGCGCGTTGTTGACGCGTGTT
CGGTACCCATCTGCACTTGGCGCCATCGAGCGCAACGCGTTTGTAGCTCA
GGAAGTATGACCTCATTCCTTCTTGTTGGCCAGTACCAGGTAGGGTTTAA
TTTCGCTATCTACTGAGCCAAGAAACGGGGTTCGTTGAGTTTGTTGAGAG
TTTTGCTTTTCTCCGACTTTCGACAGGGCGAGAGGTGGCTTGAGAATCTT
CTTTTCTTCAGCTTGCGCGCATCTTGGAGAGTCTCTTTACCATTTCTATC
CTTCGATCATGTTAATTACTTCTGCGATAAAATAGAACATACTGCGATTT
AGTAGTGGGTGATGCGGCGTGCTAGGCACTGCTGTGACGCCAGTCGACAC
GCTGGCGATTACCCTGTCCTGCTCGCGCACCCCGGCTACGACCGCTCTTT
CGCGTCGCCCGTTCTGCGCGCAGGCGTGCATTGATCGAGTTGAGAAAAAG
GGATTTGGAACGTGCGAGCCATGGTTCTTCGACTACCTCTCGTGTGTCGA
CAAATGTGTGAGTGCATGCATGCGTAGATAATACGTTCGAGTGATCCCTC
TACTTCGCGTACGTGAAATAGCTATTGATAGACATACCTTGTGCTATTAA
TAGTGACACTGACCGCTGCTTGACAAATATTCTCTGAGAATAAACTCCAA
GTGTCGAAGAAGACGCGGAGAACGCGGCAAATCCCTTTCATGTCAACGAA
AAATATTCTCGACGACGTTATTCAATAACACCCGACGAAAAGATGGACGA
ACACTACAGTAAAGACGCACATCCCGCAGGATTTTTTTAATTATGCACGA
GCTCCCTCGGAGGCATAGCTCACCCCCCCCCCTCCCCCCGACCCTGAATT
TTCCATTTTGATTGCTCTTTCCCTCTATGGTGCCCCTCAGGTGGCTCCCA
AGATTATGAAAGTTCTAAAGTAACGCGGGCTTTTTCGGGTGAATGTACGG
TGGTAACTCACTCGGAACTGGCCATGTTAGGGGCGTCTCGGTAGGGTAGT
AAGCGTTTTGCGTCAGGGGTTTCATGTCGAGGTTTCCGGCATCGTTGTTA
GAGTGCCGTCGAGTTGGAGGGCTGGGGGTGTTCGCTGGACGGCGGGAGAG
AGGGAAGATGGGGCGGGGGAATTTCCGGGAAATATCGTGGAAATTTAAGA
AATGGGCCACGCCGCCGTTCAGTGCCGGCCTCTCGAGCGGGCTGCTCGTG
ATGCAGGGTACGTGTTAGGTGGGTGAGACCGGGAGATGCTTTTGCGGATT
CGCGAGTGCTCATTTACATGTTACTCGGTCCTTTTCGTTTCCCGTCGGTG
GTTGCTGTCGTCGAGAAAACACGCACGGCAAGCCGAGCAAAGGAACCTTT
TTCCCCCCACATGAATGCATTCAACTTACAAGGTTTAGAGGGGTAAGAGA
GCAAAGGTGGAGACGGTCGAGAAAGTATGAGGTGCACTAGGTTGGTCGAT
GGAACCGCCCCCGCTGGTTTGTCCTCGTGGGCGCGTGGCGTTCCGTTCGA
CTCCTTCCTCCTTCCTCGCGGCTTTCATAGACACACCCTCTCGAGTTTTT
CTGCGACGAGTCGCTTTGTGATCAGAGTCCCGGGACGTTCTCAAATCGAG
ACAACCGTTGGGGATTGATTGGAGTACCGCAAAAAGGACGACGTGGACAT
CTCCTAGCGTGAGCGGTACGCTTTTTCAACCGCTCAGCCAGGAAAAAACC
TGCATCCTAAGTCAGTTGGAGGATTTTGGTGTATACTGTATGTACGTGGT
GTCCCCTCCCCATCTTGAACCTCGATCGCATCCATGATGAGTCTCAATAA
TCAGGTATTACTTCGAGCTTTCCCGCAGATTACAGCACGAGTAAGACTCT
GGACATTTATCTTCCATTTGAGAGGAAAGTTGGGGAGAGATCGCCCTCCA
TTTGTCCTACTGTCGACGCAAATATGGAGACCTTGGGACGACCTAACGTT
CTTGCATTTCTGGAGTCGAGTACGGAAGGGAATATAGGCGAGTAGCTCCC
GCGAGGCTTTGTGGGCAATTCCGCCAGGCTTTGTACGGAAGGGTGCTAGA
AAACTTCCCAGCATGTACTACATACTTCATATATGATCTTCCCTCACATG
AAGTGTACTGGGATGAACACATAATTCTCCACAAAAGTAAGCGTGTACGT
CTACGAGCGCTACATCTGCTATATATTGTAAATTGCGCACACCTGAAATC
AACTGAGTCAGTCAGCACAGCACCTGTAGAATTTTAAAACCGCCAAAGAG
CTATAGCTCAGGATAGAACAAAGTTCAAATGCCATGAAGAGGTTTTGTGT
TTGCAGCCTATGATCCCACCCAAACGTTTTGACAATTTTCCCCCTGACTG
GGGGATGCTCAGGTCTAGATACGTTTAGATTTTTCTT
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Coding sequence (CDS) from alignment at F-serratus_M_contig99:841221..844657-

>mRNA_F-serratus_M_contig99.21202.1 ID=mRNA_F-serratus_M_contig99.21202.1|Name=mRNA_F-serratus_M_contig99.21202.1|organism=Fucus serratus male|type=CDS|length=264bp|location=Sequence derived from alignment at F-serratus_M_contig99:841221..844657- (Fucus serratus male)
ATGTCCGAGTACAAGATGTCCGAGTACAAGGCGTGCATTGATCGAGTTGA
GAAAAAGGGATTTGGAACGTGCGAGCCATGGTTCTTCGACTACCTCTCGT
GTGTCGACAAATGTGCGTGCATTGATCGAGTTGAGAAAAAGGGATTTGGA
ACGTGCGAGCCATGGTTCTTCGACTACCTCTCGTGTGTCGACAAATGTGT
GGCTCCCAAGATTATGAAAGTTCTAAAGTAAGTGGCTCCCAAGATTATGA
AAGTTCTAAAGTAA
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