mRNA_F-serratus_M_contig99.21202.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: D8LEI8_ECTSI (Ubiquinol cytochrome c reductase subunit 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEI8_ECTSI) HSP 1 Score: 120 bits (302), Expect = 1.370e-29 Identity = 51/67 (76.12%), Postives = 57/67 (85.07%), Query Frame = 1 Query: 1 DEEPVDPLTGIREGCSETKPCASTMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 201 D+EPVDPLTGIR C ET C++TMSEYKAC++RV KGFGTCEPWFFDY+SCVDKC APKIMK K Sbjct: 3 DDEPVDPLTGIRATCGETTACSATMSEYKACVERVTSKGFGTCEPWFFDYISCVDKCAAPKIMKATK 69
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: A0A6H5K2B5_9PHAE (UCR_hinge domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2B5_9PHAE) HSP 1 Score: 119 bits (298), Expect = 4.960e-29 Identity = 52/67 (77.61%), Postives = 57/67 (85.07%), Query Frame = 1 Query: 1 DEEPVDPLTGIREGCSETKPCASTMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 201 DEEPVDPLT IR C+ET CA+ MSEYKAC++RV KGFGTCEPWFFDY+SCVDKC APKIMKV K Sbjct: 3 DEEPVDPLTKIRATCAETTACAAAMSEYKACVERVISKGFGTCEPWFFDYISCVDKCAAPKIMKVTK 69
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: F0XZK5_AURAN (UCR_hinge domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZK5_AURAN) HSP 1 Score: 77.4 bits (189), Expect = 4.010e-14 Identity = 33/67 (49.25%), Postives = 43/67 (64.18%), Query Frame = 1 Query: 1 DEEPVDPLTGIREGCSETKPCASTMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 201 DEEPV PL +R+ C C Y +C+DR+E KG G CEP++FD+L C+DKC P IM+ LK Sbjct: 3 DEEPVCPLPAMRKACE--PKCTDAYKAYLSCVDRIEAKGGGDCEPYYFDWLKCLDKCAMPHIMQKLK 67
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: A0A5A8DS32_CAFRO (Cytochrome b-c1 complex subunit 6 n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DS32_CAFRO) HSP 1 Score: 71.2 bits (173), Expect = 5.910e-12 Identity = 31/67 (46.27%), Postives = 41/67 (61.19%), Query Frame = 1 Query: 1 DEEPVDPLTGIREGCSETKPCASTMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 201 D E VD I + C + C +Y+AC+ R+ KG G+CEPW FDY +CVDKC AP++ VLK Sbjct: 3 DAEVVDQKPRIEKECHSS--CTGQWGKYEACVKRITAKGSGSCEPWAFDYWTCVDKCTAPRLFAVLK 67
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: A0A0R3SCJ8_HYMDI (UCR_hinge domain-containing protein n=1 Tax=Hymenolepis diminuta TaxID=6216 RepID=A0A0R3SCJ8_HYMDI) HSP 1 Score: 68.9 bits (167), Expect = 3.850e-11 Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 1 Query: 4 EEPVDPLTGIREGCSETKPCASTMSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK 201 EE VDP+ +R+ C ETK CA + +++C DR + K +CE F D + CVDKCV PK+ KVLK Sbjct: 3 EEIVDPIHALRQECRETKECAKFVKLFESCSDR-QTKTKESCEEEFIDLIQCVDKCVGPKLFKVLK 67
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: I1QXY5_ORYGL (Cytochrome b-c1 complex subunit 6 n=6 Tax=BOP clade TaxID=359160 RepID=I1QXY5_ORYGL) HSP 1 Score: 68.2 bits (165), Expect = 7.580e-11 Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 1 Query: 1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 201 DEEPVDP + E C KP C + EY+ C+ RVEK G C +FDY SC+DKCVAPK+++ LK Sbjct: 3 DEEPVDPKKYLEERC---KPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCVAPKLLEKLK 69
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: A0A0E0F2V6_9ORYZ (Cytochrome b-c1 complex subunit 6 n=2 Tax=Oryza TaxID=4527 RepID=A0A0E0F2V6_9ORYZ) HSP 1 Score: 68.2 bits (165), Expect = 1.230e-10 Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 1 Query: 1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 201 DEEPVDP + E C KP C + EY+ C+ RVEK G C +FDY SC+DKCVAPK+++ LK Sbjct: 21 DEEPVDPKKYLEERC---KPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCVAPKLLEKLK 87
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: Q53PN7_ORYSJ (Ubiquinol--cytochrome-c reductase, putative n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53PN7_ORYSJ) HSP 1 Score: 68.2 bits (165), Expect = 1.570e-10 Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 1 Query: 1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 201 DEEPVDP + E C KP C + EY+ C+ RVEK G C +FDY SC+DKCVAPK+++ LK Sbjct: 30 DEEPVDPKKYLEERC---KPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCVAPKLLEKLK 96
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: A0A0E0F2V4_9ORYZ (UCR_hinge domain-containing protein n=1 Tax=Oryza meridionalis TaxID=40149 RepID=A0A0E0F2V4_9ORYZ) HSP 1 Score: 68.2 bits (165), Expect = 1.700e-10 Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 1 Query: 1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 201 DEEPVDP + E C KP C + EY+ C+ RVEK G C +FDY SC+DKCVAPK+++ LK Sbjct: 33 DEEPVDPKKYLEERC---KPQCVKPLYEYEKCVKRVEKDDTGHKHCTGQYFDYWSCIDKCVAPKLLEKLK 99
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Match: A0A0Q3IT18_BRADI (UCR_hinge domain-containing protein n=1 Tax=Brachypodium distachyon TaxID=15368 RepID=A0A0Q3IT18_BRADI) HSP 1 Score: 67.8 bits (164), Expect = 2.580e-10 Identity = 35/70 (50.00%), Postives = 43/70 (61.43%), Query Frame = 1 Query: 1 DEEPVDPLTGIREGCSETKP-CASTMSEYKACIDRVEKKGFGT--CEPWFFDYLSCVDKCVAPKIMKVLK 201 DEEPVDP + E C KP C + EY+ C+ RVE G C +FDYLSC+DKCVAPK+ + LK Sbjct: 37 DEEPVDPKKYLEERC---KPQCVKPLYEYERCVKRVESDDTGHKHCTGQYFDYLSCIDKCVAPKLFEKLK 103 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig99.21202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig99.21202.1 >prot_F-serratus_M_contig99.21202.1 ID=prot_F-serratus_M_contig99.21202.1|Name=mRNA_F-serratus_M_contig99.21202.1|organism=Fucus serratus male|type=polypeptide|length=44bp MSEYKACIDRVEKKGFGTCEPWFFDYLSCVDKCVAPKIMKVLK*back to top mRNA from alignment at F-serratus_M_contig99:841221..844657- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig99.21202.1 ID=mRNA_F-serratus_M_contig99.21202.1|Name=mRNA_F-serratus_M_contig99.21202.1|organism=Fucus serratus male|type=mRNA|length=3437bp|location=Sequence derived from alignment at F-serratus_M_contig99:841221..844657- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig99:841221..844657- >mRNA_F-serratus_M_contig99.21202.1 ID=mRNA_F-serratus_M_contig99.21202.1|Name=mRNA_F-serratus_M_contig99.21202.1|organism=Fucus serratus male|type=CDS|length=264bp|location=Sequence derived from alignment at F-serratus_M_contig99:841221..844657- (Fucus serratus male)back to top |