mRNA_F-serratus_M_contig99.21174.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig99.21174.1
Unique NamemRNA_F-serratus_M_contig99.21174.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig99.21174.1 vs. uniprot
Match: A0A6H5KC39_9PHAE (Aa_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC39_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 5.320e-9
Identity = 31/49 (63.27%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 IIVLRHSLYALRGGDVMTAPFGQVAWITIGVLALIVIFVVVLDLFDVAQ 147
            +IV+RHSLYALRG DVM A FGQVAW+T  +LAL+V  +V L+   VAQ
Sbjct:  415 VIVMRHSLYALRGKDVMVAEFGQVAWVTFALLALVVGAMVGLNTVGVAQ 463
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BLAST of mRNA_F-serratus_M_contig99.21174.1 vs. uniprot
Match: D7FZR9_ECTSI (Transmembrane amino acid transporter protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR9_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 1.860e-8
Identity = 31/49 (63.27%), Postives = 37/49 (75.51%), Query Frame = 1 
Query:    1 IIVLRHSLYALRGGDVMTAPFGQVAWITIGVLALIVIFVVVLDLFDVAQ 147
            +IV+RHSLYALRG DVM A FGQVAW+T  +LAL V  +V L+   VAQ
Sbjct:  415 VIVMRHSLYALRGKDVMVAEFGQVAWVTFALLALAVGAMVGLNTVGVAQ 463
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig99.21174.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC39_9PHAE5.320e-963.27Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
D7FZR9_ECTSI1.860e-863.27Transmembrane amino acid transporter protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig99contigF-serratus_M_contig99:64327..64473 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932780.334273-CDS-F-serratus_M_contig99:64326..644731622932780.334273-CDS-F-serratus_M_contig99:64326..64473Fucus serratus maleCDSF-serratus_M_contig99 64327..64473 -
1690964471.498661-CDS-F-serratus_M_contig99:64326..644731690964471.498661-CDS-F-serratus_M_contig99:64326..64473Fucus serratus maleCDSF-serratus_M_contig99 64327..64473 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig99.21174.1prot_F-serratus_M_contig99.21174.1Fucus serratus malepolypeptideF-serratus_M_contig99 64327..64473 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig99.21174.1

>prot_F-serratus_M_contig99.21174.1 ID=prot_F-serratus_M_contig99.21174.1|Name=mRNA_F-serratus_M_contig99.21174.1|organism=Fucus serratus male|type=polypeptide|length=49bp
IIVLRHSLYALRGGDVMTAPFGQVAWITIGVLALIVIFVVVLDLFDVAQ
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mRNA from alignment at F-serratus_M_contig99:64327..64473-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig99.21174.1 ID=mRNA_F-serratus_M_contig99.21174.1|Name=mRNA_F-serratus_M_contig99.21174.1|organism=Fucus serratus male|type=mRNA|length=147bp|location=Sequence derived from alignment at F-serratus_M_contig99:64327..64473- (Fucus serratus male)
ATAATTGTTCTGCGACATAGCCTGTACGCACTAAGAGGAGGCGACGTCAT
GACCGCTCCGTTCGGCCAAGTGGCCTGGATAACGATCGGAGTTCTGGCGC
TGATCGTGATCTTCGTAGTTGTTCTCGACTTGTTCGATGTCGCGCAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig99:64327..64473-

>mRNA_F-serratus_M_contig99.21174.1 ID=mRNA_F-serratus_M_contig99.21174.1|Name=mRNA_F-serratus_M_contig99.21174.1|organism=Fucus serratus male|type=CDS|length=294bp|location=Sequence derived from alignment at F-serratus_M_contig99:64327..64473- (Fucus serratus male)
ATAATTGTTCTGCGACATAGCCTGTACGCACTAAGAGGAGGCGACGTCAT
GACCGCTCCGTTCGGCCAAGTGGCCTGGATAACGATCGGAGTTCTGGCGC
TGATCGTGATCTTCGTAGTTGTTCTCGACTTGTTCGATGTCGCGCAGATA
ATTGTTCTGCGACATAGCCTGTACGCACTAAGAGGAGGCGACGTCATGAC
CGCTCCGTTCGGCCAAGTGGCCTGGATAACGATCGGAGTTCTGGCGCTGA
TCGTGATCTTCGTAGTTGTTCTCGACTTGTTCGATGTCGCGCAG
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