mRNA_F-serratus_M_contig980.21118.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI) HSP 1 Score: 204 bits (518), Expect = 1.100e-58 Identity = 124/344 (36.05%), Postives = 178/344 (51.74%), Query Frame = 1 Query: 1 CEDLFSKLEDGPDGRKTQSVRLQVRGEPKSGTGMTQEWSWGALAHSCLYLQRLYGRKSCRILWRN---------ETDSTHHFRLETHSILFEPDL------AIHDASKPCTCTGVKGVNIEFSAGRKHMLPVDPTCRWFHTRGISN*GFRACEPPDGGSVENQPQLWACVQESMCDLTDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLVKEKIDSVDHFFVNHLDAITQWTSLRYF-LFTQLASETSEVFWYEDAVADPIEWHGRYFTFVGLRPPPRVVHHTAAIATLGGSILGFPAKGLDYHPDGEEQAPTRTFRDELNNGSLAIMDDVLRKWLPPIILRRF 984 CE +F KL Q V LQ+RGEPKSGT EW+ AL +C L RLYG +C WR + T ++ +F+P+ A ++ PC C+ V V+I S+ KH LPV P+C W H ++ + C +G V N C+Q+ C + DD +Q+ +LRDPRAV VSS+F L P +SVD F + L I + LRY L +L +T E F Y++++ADP++WH R+ + VGL PPP VV A T GF KG+D HP G+E RT+ DE+++ ++ + R+WLPP++L +F Sbjct: 86 CETMFGKLNGAQ-----QHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPEN-KGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVE-FTYDESLADPLQWHQRWLSSVGLTPPPGVV--LQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKF 420
BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE) HSP 1 Score: 154 bits (390), Expect = 5.000e-42 Identity = 89/234 (38.03%), Postives = 127/234 (54.27%), Query Frame = 1 Query: 298 VKGVNIEFSAGRKHMLPVDPTCRWFHTRGISN*GFRACEPPDGGSVENQPQLWACVQESMCDLTDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLVKEKIDSVDHFFVNHLDAITQWTSLRYFLFTQLASETSEVFWYEDAVADPIEWHGRYFTFVGLRPPPRVVHHTAAIATLGGSILGFPA-----KGLDYHPDGEEQAPTRTFRDELNNGSLAIMDDVLRKWLPPIILRRF 984 ++ V I S KH LPV+ +C W H G + G C DG VE LWAC+Q++ C++TD+ LQ +RDPRAV VS+YF + + ++ S+D + L + +T+LR+ LF L S +E+FWYE V DP +WH R+ +F GL P GG I G A K L+ HP G E + RT++DE++ G MD +LRKWLP ++L R+ Sbjct: 2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGD-GCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNY--QKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILP-------------GGWIDGMVAENQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARY 219
BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE) HSP 1 Score: 108 bits (271), Expect = 6.640e-25 Identity = 63/169 (37.28%), Postives = 92/169 (54.44%), Query Frame = 1 Query: 484 LTDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLVKEKID---SVDHFFVNHLDAITQWTSLRYFLFTQLASETSEVFWYEDAVADPIEWHGRYFTFVGLRPPPRVVHHTAAIATLGGSILGFPAKGLDYHPDGEEQAPTRTFRDELNNGSLAIMDDVLRKWLPPIILRR 981 L DDSLQ AVLRDPRAV VS+YF + + P + + S+D + L + Q+T++R+ LF S+ SE+FWYEDA+ DP+ WH R+ +F G P + A + D HP G++ + RT+ DE++ MD +LR WLP ++L R Sbjct: 25 LLDDSLQFAVLRDPRAVAVSTYFYV--KSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVK-----RDPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLER 186
BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Match: A0A6H5JP89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP89_9PHAE) HSP 1 Score: 102 bits (253), Expect = 1.160e-22 Identity = 57/149 (38.26%), Postives = 85/149 (57.05%), Query Frame = 1 Query: 541 SSYFQLARQKSPMLVKEKIDSVDHFFVNHLDAITQWTSLRYF-LFTQLASETSEVFWYEDAVADPIEWHGRYFTFVGLRPPPRVVHHTAAIATLGGSILGFPAKGLDYHPDGEEQAPTRTFRDELNNGSLAIMDDVLRKWLPPIILRRF 984 SS+F L +P+ +SVD F + L I + LRY L +L +T E F Y++++ADP++WH R+ + VGL PPP VV A T GF KG+D HP G+E RT+ DE++ ++D+ R+WLPP++L +F Sbjct: 8 SSFFHLKTHHTPLWKYWHDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVE-FTYDESLADPLQWHQRWLSSVGLTPPPAVV--LQATNTSLRREYGFVGKGVDKHPGGKEATEKRTWEDEISREVAEQLEDICREWLPPVLLEKF 153
BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI) HSP 1 Score: 98.6 bits (244), Expect = 2.440e-21 Identity = 55/157 (35.03%), Postives = 85/157 (54.14%), Query Frame = 1 Query: 514 LRDPRAVTVSSYFQLARQKSPMLVKEKIDSVDHFFVNHLDAITQWTSLRYFLFTQLASETSEVFWYEDAVADPIEWHGRYFTFVGLRPPPRVVHHTAAIATLGGSILGFPAKGLDYHPDGEEQAPTRTFRDELNNGSLAIMDDVLRKWLPPIILRRF 984 +RDPRAV VS+YF + R + + S+D V L I Q+T++R+ LF S+ SE+FWYEDA+ DP+ W+ R+ + G P R + A T + + HP G+ + RT+ DE++ + M+ +LR WLP ++L RF Sbjct: 1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAEN----DRKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARF 153 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig980.21118.1 >prot_F-serratus_M_contig980.21118.1 ID=prot_F-serratus_M_contig980.21118.1|Name=mRNA_F-serratus_M_contig980.21118.1|organism=Fucus serratus male|type=polypeptide|length=175bp MCDLTDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLVKEKIDSVDHFFVNback to top mRNA from alignment at F-serratus_M_contig980:252288..255094+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig980.21118.1 ID=mRNA_F-serratus_M_contig980.21118.1|Name=mRNA_F-serratus_M_contig980.21118.1|organism=Fucus serratus male|type=mRNA|length=2807bp|location=Sequence derived from alignment at F-serratus_M_contig980:252288..255094+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig980:252288..255094+ >mRNA_F-serratus_M_contig980.21118.1 ID=mRNA_F-serratus_M_contig980.21118.1|Name=mRNA_F-serratus_M_contig980.21118.1|organism=Fucus serratus male|type=CDS|length=1050bp|location=Sequence derived from alignment at F-serratus_M_contig980:252288..255094+ (Fucus serratus male)back to top |