mRNA_F-serratus_M_contig980.21118.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig980.21118.1
Unique NamemRNA_F-serratus_M_contig980.21118.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 1.100e-58
Identity = 124/344 (36.05%), Postives = 178/344 (51.74%), Query Frame = 1 
Query:    1 CEDLFSKLEDGPDGRKTQSVRLQVRGEPKSGTGMTQEWSWGALAHSCLYLQRLYGRKSCRILWRN---------ETDSTHHFRLETHSILFEPDL------AIHDASKPCTCTGVKGVNIEFSAGRKHMLPVDPTCRWFHTRGISN*GFRACEPPDGGSVENQPQLWACVQESMCDLTDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLVKEKIDSVDHFFVNHLDAITQWTSLRYF-LFTQLASETSEVFWYEDAVADPIEWHGRYFTFVGLRPPPRVVHHTAAIATLGGSILGFPAKGLDYHPDGEEQAPTRTFRDELNNGSLAIMDDVLRKWLPPIILRRF 984
            CE +F KL         Q V LQ+RGEPKSGT    EW+  AL  +C  L RLYG  +C   WR           +  T    ++    +F+P+       A   ++ PC C+ V  V+I  S+  KH LPV P+C W H   ++    + C   +G  V N      C+Q+  C + DD +Q+ +LRDPRAV VSS+F L     P       +SVD F +  L  I  +  LRY  L  +L  +T E F Y++++ADP++WH R+ + VGL PPP VV    A  T      GF  KG+D HP G+E    RT+ DE+++     ++ + R+WLPP++L +F
Sbjct:   86 CETMFGKLNGAQ-----QHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPEN-KGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVE-FTYDESLADPLQWHQRWLSSVGLTPPPGVV--LQATNTSLRREYGFAGKGVDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKF 420
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BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 5.000e-42
Identity = 89/234 (38.03%), Postives = 127/234 (54.27%), Query Frame = 1 
Query:  298 VKGVNIEFSAGRKHMLPVDPTCRWFHTRGISN*GFRACEPPDGGSVENQPQLWACVQESMCDLTDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLVKEKIDSVDHFFVNHLDAITQWTSLRYFLFTQLASETSEVFWYEDAVADPIEWHGRYFTFVGLRPPPRVVHHTAAIATLGGSILGFPA-----KGLDYHPDGEEQAPTRTFRDELNNGSLAIMDDVLRKWLPPIILRRF 984
            ++ V I  S   KH LPV+ +C W H  G  + G   C   DG  VE    LWAC+Q++ C++TD+ LQ   +RDPRAV VS+YF    + +    ++   S+D   +  L  +  +T+LR+ LF  L S  +E+FWYE  V DP +WH R+ +F GL  P             GG I G  A     K L+ HP G E +  RT++DE++ G    MD +LRKWLP ++L R+
Sbjct:    2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGD-GCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNY--QKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILP-------------GGWIDGMVAENQAHKHLNPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARY 219
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BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 6.640e-25
Identity = 63/169 (37.28%), Postives = 92/169 (54.44%), Query Frame = 1 
Query:  484 LTDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLVKEKID---SVDHFFVNHLDAITQWTSLRYFLFTQLASETSEVFWYEDAVADPIEWHGRYFTFVGLRPPPRVVHHTAAIATLGGSILGFPAKGLDYHPDGEEQAPTRTFRDELNNGSLAIMDDVLRKWLPPIILRR 981
            L DDSLQ AVLRDPRAV VS+YF +  +  P    + +    S+D   +  L  + Q+T++R+ LF    S+ SE+FWYEDA+ DP+ WH R+ +F G   P   +    A        +       D HP G++ +  RT+ DE++      MD +LR WLP ++L R
Sbjct:   25 LLDDSLQFAVLRDPRAVAVSTYFYV--KSHPAFYSDHVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDIDATLPEAQQKVK-----RDPHPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLER 186
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BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Match: A0A6H5JP89_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP89_9PHAE)

HSP 1 Score: 102 bits (253), Expect = 1.160e-22
Identity = 57/149 (38.26%), Postives = 85/149 (57.05%), Query Frame = 1 
Query:  541 SSYFQLARQKSPMLVKEKIDSVDHFFVNHLDAITQWTSLRYF-LFTQLASETSEVFWYEDAVADPIEWHGRYFTFVGLRPPPRVVHHTAAIATLGGSILGFPAKGLDYHPDGEEQAPTRTFRDELNNGSLAIMDDVLRKWLPPIILRRF 984
            SS+F L    +P+      +SVD F +  L  I  +  LRY  L  +L  +T E F Y++++ADP++WH R+ + VGL PPP VV    A  T      GF  KG+D HP G+E    RT+ DE++      ++D+ R+WLPP++L +F
Sbjct:    8 SSFFHLKTHHTPLWKYWHDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVE-FTYDESLADPLQWHQRWLSSVGLTPPPAVV--LQATNTSLRREYGFVGKGVDKHPGGKEATEKRTWEDEISREVAEQLEDICREWLPPVLLEKF 153
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BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.440e-21
Identity = 55/157 (35.03%), Postives = 85/157 (54.14%), Query Frame = 1 
Query:  514 LRDPRAVTVSSYFQLARQKSPMLVKEKIDSVDHFFVNHLDAITQWTSLRYFLFTQLASETSEVFWYEDAVADPIEWHGRYFTFVGLRPPPRVVHHTAAIATLGGSILGFPAKGLDYHPDGEEQAPTRTFRDELNNGSLAIMDDVLRKWLPPIILRRF 984
            +RDPRAV VS+YF + R    +    +  S+D   V  L  I Q+T++R+ LF    S+ SE+FWYEDA+ DP+ W+ R+ +  G   P R +    A  T          +  + HP G+  +  RT+ DE++  +   M+ +LR WLP ++L RF
Sbjct:    1 MRDPRAVAVSTYFYIKRSPIHLHHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAEN----DRKREPHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARF 153
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig980.21118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LJE4_ECTSI1.100e-5836.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDV7_9PHAE5.000e-4238.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JG38_9PHAE6.640e-2537.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP89_9PHAE1.160e-2238.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2T4_ECTSI2.440e-2135.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig980contigF-serratus_M_contig980:252288..255094 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size999
Cds size525
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig980.21118.1prot_F-serratus_M_contig980.21118.1Fucus serratus malepolypeptideF-serratus_M_contig980 254570..255094 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932766.815311-UTR-F-serratus_M_contig980:252287..2523841622932766.815311-UTR-F-serratus_M_contig980:252287..252384Fucus serratus maleUTRF-serratus_M_contig980 252288..252384 +
1690964464.045519-UTR-F-serratus_M_contig980:252287..2523841690964464.045519-UTR-F-serratus_M_contig980:252287..252384Fucus serratus maleUTRF-serratus_M_contig980 252288..252384 +
1622932766.8310757-UTR-F-serratus_M_contig980:253630..2538381622932766.8310757-UTR-F-serratus_M_contig980:253630..253838Fucus serratus maleUTRF-serratus_M_contig980 253631..253838 +
1690964464.0616798-UTR-F-serratus_M_contig980:253630..2538381690964464.0616798-UTR-F-serratus_M_contig980:253630..253838Fucus serratus maleUTRF-serratus_M_contig980 253631..253838 +
1622932766.843801-UTR-F-serratus_M_contig980:254400..2545691622932766.843801-UTR-F-serratus_M_contig980:254400..254569Fucus serratus maleUTRF-serratus_M_contig980 254401..254569 +
1690964464.0734994-UTR-F-serratus_M_contig980:254400..2545691690964464.0734994-UTR-F-serratus_M_contig980:254400..254569Fucus serratus maleUTRF-serratus_M_contig980 254401..254569 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932766.8617873-CDS-F-serratus_M_contig980:254569..2550941622932766.8617873-CDS-F-serratus_M_contig980:254569..255094Fucus serratus maleCDSF-serratus_M_contig980 254570..255094 +
1690964464.0854363-CDS-F-serratus_M_contig980:254569..2550941690964464.0854363-CDS-F-serratus_M_contig980:254569..255094Fucus serratus maleCDSF-serratus_M_contig980 254570..255094 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig980.21118.1

>prot_F-serratus_M_contig980.21118.1 ID=prot_F-serratus_M_contig980.21118.1|Name=mRNA_F-serratus_M_contig980.21118.1|organism=Fucus serratus male|type=polypeptide|length=175bp
MCDLTDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLVKEKIDSVDHFFVN
HLDAITQWTSLRYFLFTQLASETSEVFWYEDAVADPIEWHGRYFTFVGLR
PPPRVVHHTAAIATLGGSILGFPAKGLDYHPDGEEQAPTRTFRDELNNGS
LAIMDDVLRKWLPPIILRRFRLID*
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mRNA from alignment at F-serratus_M_contig980:252288..255094+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig980.21118.1 ID=mRNA_F-serratus_M_contig980.21118.1|Name=mRNA_F-serratus_M_contig980.21118.1|organism=Fucus serratus male|type=mRNA|length=2807bp|location=Sequence derived from alignment at F-serratus_M_contig980:252288..255094+ (Fucus serratus male)
TGTGAGGATCTGTTCAGTAAGCTCGAAGACGGGCCGGATGGAAGGAAGAC
GCAGTCCGTGAGGCTGCAAGTGCGAGGAGAGCCGAAGAGTGGCACAGGTG
CGATTTTTTTTATAATATATATTTTTATTAATAATGGCATTCGCGGGGTT
TAGGTCCACGTGGTCTCCGCACGAGTTCAAGAAAAAATCTGAACGCGCCT
AGACCTTCTGAGCATCCCTCAGCCAGGGGGGGGAAAGGGTCAAAACGTTT
AGGTGGGGATCATAGGCTTTTGGACCTCCAATTACCATCCTGCCTGTGGT
CACAAAGGATCTTCCCCTCTCTCCCCGGTTCACGCCTTACGATTTATATC
GCGATGCAAGGTCAGAACTTTGGAGGGGGGGGGGCGAAGGGGGCGGGGGG
TTGTGCGTTTTTCCGGGTGCTCGACATCAATGCCGCTATTATTGAACTTG
TTTCACCATGTCGAAGGCAGTGCGCTCTCCCCCCCCTCGAGAGCTCAAAT
GTCATGCACTGCGAAAATAGGATATCTCAGAAGCTTTTTTGTTCGTCTTT
TTCTATTTTGTAACCGCGGGGAAATCTACGTCGCACCCTCAGCGTTCATC
GAAGGCTCAGAAACCGAACCCCACCTTCCAGCCCCCCCCCCCCCATTCCT
GTCCCTCCAAAAATTATACATATACAATACTCAAAACCGTTCAGTTACCG
TCCGGCGGAGCCTTCTCGCCGTCTTTACCCAACCACCCACTTGCAGTGGT
GGAGCTGAATCTCCTGCCACGAGGGTAAAACCCTCCGTAAACTTGACACC
GTCCAGGACTACCCCCGTGCTCTCCTCCAAACCTGTCCATGCACGCGCGC
CATGCACGCTGATTCGCCGTCAGCCCACGCCACGGCTGCGTGGAACGATT
TTCAGAACGCTTACGCTGCAGGCGGCTAGTGGCGGCCTCCCCTCCTCCTT
GTCTGATAGGCTTCTTAAATACCTCATCCGCGCGGCAACAATCGTGCGTG
GCCGACACAATGTTGTTTTCTTCGCGCAGTTTTCTTGCCGTTTTTTCCGC
CAGATGTGCCGCGGCTCCCTCCCTCCCAAGGTCCGCCTGTCACTCTCAAC
GTGAACTAGAGGCCTCAACCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
ATCTGAATACATGGAGAGTGCTGATCTGAATAACTGATCTGAATGCTGGT
ATGAATACACACGAGTAGTACCGATCTGAATGCTGATCTGAATACACATG
GAACACTGATCTGAACGCTGAAATGAATAACTGATCTGAATGCTGATATG
AATATACATGAAATATATACGGATCTGAATGCTGACAATACAGGTATGAC
GCAAGAGTGGAGCTGGGGGGCGCTGGCTCACTCGTGCCTCTACCTGCAAC
GACTGTACGGCCGGAAAAGCTGCCGCATCCTGTGGAGGAACGAGACCGAC
AGCACCCACCACTTCCGTCTGGAGACCCACTCGATCTTGTTCGAGCCGGA
TCTAGCCATCCACGACGCCAGCAAGCCTTGCACCTGCACTGGCGTCAAGG
GGTAAGCGCGGAAGCAGCGTTCAGGGAAAACATTGTGTGTGTACGTGGTG
GCTTCGTGGTCTCATTTCGCGATCAACGTTCGGCCGCTTCATTGGTATTT
TGAAGCCTGGTTGGTACGAGTTAGAAATGCCGAGTTCGTGTGACAAAAAA
CTGTTATTGTTTTTTTACCGCGTTATCACCAAAAACGCCTCGAAGCTGTG
GACAACCCCTTGCGCTCGGGCACGCGCATCGCGAAACGTAAGCGGGGTCG
GATCTCAAGGTCGCAACCTCCCTCGTAGCCAGAAACACAACCCTTGCCGG
CTGGTGTTCCGCCGTGCACCTCACGACATGTTAAAGGGCATCACGCGAGA
GTTCGCACGGAAGTACTTGTTCCTCGACGAAGAATATGACTGCGGTGCGC
GCTAGCACCTCCCGCTTGTTACTCGTCTCGACACGCATTATAAATACCCC
CTGTCCGTACCGCTTCTTTACCTCCCGAAAACCTTGCTCCCCACCGCCGC
TTTTGCGACCGCACGCGGCGTTTTTTCGTCTCATTCCGCCCTCCCTTGTA
TTCATACTTGCAGTGTGAACATTGAATTTTCCGCAGGGCGAAAGCACATG
CTGCCCGTTGACCCGACTTGCCGCTGGTTTCACACTCGCGGCATCTCCAA
TTAGGGCTTCCGGGCGTGCGAGCCGCCGGACGGCGGGTCGGTGGAAAATC
AACCCCAGCTGTGGGCGTGCGTGCAGGAGTCCATGTGCGACCTCACGGAC
GATAGCCTCCAGATTGCGGTGCTTCGCGACCCGCGCGCCGTGACAGTCAG
CTCCTACTTTCAGCTCGCCCGGCAGAAGTCGCCCATGCTGGTCAAGGAGA
AAATCGATTCCGTCGACCACTTTTTCGTGAACCATCTGGACGCCATCACC
CAGTGGACCAGCCTCCGATACTTTCTCTTCACCCAGCTCGCGTCGGAGAC
GTCGGAAGTGTTCTGGTACGAGGACGCGGTCGCTGATCCGATCGAGTGGC
ACGGCCGTTACTTCACCTTCGTGGGTCTCCGGCCGCCCCCTCGGGTGGTT
CACCACACCGCAGCCATTGCCACCCTGGGTGGGAGCATTTTGGGCTTCCC
CGCCAAGGGTCTCGATTACCACCCCGACGGCGAGGAGCAAGCACCCACTC
GAACCTTTAGGGACGAGCTCAACAACGGATCACTGGCCATCATGGACGAC
GTGCTGCGCAAGTGGCTCCCACCGATCATCCTGAGGCGATTTCGTCTGAT
CGACTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig980:252288..255094+

>mRNA_F-serratus_M_contig980.21118.1 ID=mRNA_F-serratus_M_contig980.21118.1|Name=mRNA_F-serratus_M_contig980.21118.1|organism=Fucus serratus male|type=CDS|length=1050bp|location=Sequence derived from alignment at F-serratus_M_contig980:252288..255094+ (Fucus serratus male)
ATGTGCGACCTCACGGACGATAGCCTCCAGATTGCGGTGCTTCGCGACCC
GCGCGCCGTGACAGTCAGCTCCTACTTTCAGCTCGCCCGGCAGAAGTCGC
CCATGCTGGTCAAGGAGAAAATCGATTCCGTCGACCACTTTTTCGTGAAC
CATCTGGACGCCATCACCCAGTGGACCAGCCTCCGATACTTTCTCTTCAC
CCAGCTCGCGTCGGAGACGTCGGAAGTGTTCTGGTACGAGGACGCGGTCG
CTGATCCGATCGAGTGGCACGGCCGTTACTTCACCTTCGTGGGTCTCCGG
CCGCCCCCTCGGGTGGTTCACCACACCGCAGCCATTGCCACCCTGGGTGG
GAGCATTTTGGGCTTCCCCGCCAAGGGTCTCGATTACCACCCCGACGGCG
AGGAGCAAGCACCCACTCGAACCTTTAGGGACGAGCTCAACAACGGATCA
CTGGCCATCATGGACGACGTGCTGCGCAAGTGGCTCCCACCGATCATCCT
GAGGCGATTTCGTCTGATCGACTAGATGTGCGACCTCACGGACGATAGCC
TCCAGATTGCGGTGCTTCGCGACCCGCGCGCCGTGACAGTCAGCTCCTAC
TTTCAGCTCGCCCGGCAGAAGTCGCCCATGCTGGTCAAGGAGAAAATCGA
TTCCGTCGACCACTTTTTCGTGAACCATCTGGACGCCATCACCCAGTGGA
CCAGCCTCCGATACTTTCTCTTCACCCAGCTCGCGTCGGAGACGTCGGAA
GTGTTCTGGTACGAGGACGCGGTCGCTGATCCGATCGAGTGGCACGGCCG
TTACTTCACCTTCGTGGGTCTCCGGCCGCCCCCTCGGGTGGTTCACCACA
CCGCAGCCATTGCCACCCTGGGTGGGAGCATTTTGGGCTTCCCCGCCAAG
GGTCTCGATTACCACCCCGACGGCGAGGAGCAAGCACCCACTCGAACCTT
TAGGGACGAGCTCAACAACGGATCACTGGCCATCATGGACGACGTGCTGC
GCAAGTGGCTCCCACCGATCATCCTGAGGCGATTTCGTCTGATCGACTAG
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