mRNA_F-serratus_M_contig972.21055.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 231 bits (588), Expect = 1.540e-67 Identity = 131/426 (30.75%), Postives = 225/426 (52.82%), Query Frame = 1 Query: 148 EKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRAGC-------------------------------------GLCMEVYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQ 1314 E ++PT + +S+ L A+ ++ +L HFD + F+++++DE++++ +P+ G + +L K++ G +A R W++ + +G Q AD CVFR + +G M++ V+VDDI A + + D+F L + V +K++G+ +Y C R+ + L++ Q + E +A + ++ ++P L +V+ + +E E P+RE VG+LMW AT T PDIA AVRA G+ M+V+ D D+ + RR+VSG +++ G ++W SR Q+ T AEY +++V+ EVLFLRQV FM P + + FEDN GAI +A N I + +KHIDV+HH +R+ + +++ + +V + QHAD LTK + + Sbjct: 10 ELFAPTVSVSSVRLLAALACEQNLDLCHFDIQQAFVQSELDEDVFMRLPQGCGRLSGLIVKLCKSLYGLKQASRHWHSHLTRCLLLLGFLQCLADACVFRLMEEGRVIMIIVVHVDDIFAVGQKERC-DKFGEDLNEMVPVKNLGELRWYSACFYERDVERGLLRISQQRFAEELAAEYGIEWGRSVP-------LPVSVKLTDFDENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNP--ITNSNSKHIDVRHHFIRELVERKEISITHVPTHFQHADFLTKAISKE 425
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A6H5FV69_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FV69_9HEMI) HSP 1 Score: 241 bits (614), Expect = 1.330e-66 Identity = 151/453 (33.33%), Postives = 235/453 (51.88%), Query Frame = 1 Query: 73 DGKVQKYKCRLVAQGFWQVEGVHHTEKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EFPGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKA--TNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRA-----------------------------------GCGLCMEVYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQKF 1320 +G++ ++K RLV +G Q +G E +SP SI + A+ A D ++ DA FL+ D+ EEIY+ P + + V RL K+I G +A R WN K + IGL Q+K D CV+ K DG +++AV+VDD L + ++ + T L + K+ DMG A + +G ITR+R ++++ + Q Y+E + KRF+++ + + IP ++ LS EP++ EE+ +M K PY+E VG+L++ + ++ PDIA AV + M Y D D+ A +D RR+++G + + ISW ++ Q A T AEY +LS E L+LR + + P +G F DN GA LA N RTKHIDV+HH VR+ +++ + Y+ S + AD LTKPLD +KF Sbjct: 447 NGQIVQHKARLVVKGCAQQKGTDFEETFSPVVRYTSIRFIFALAAQLDLDIDQMDAVSAFLQGDLTEEIYMTQPIGYRDNTNRVCRLKKSIYGLKQASRAWNLKLDACLKEIGLLQSKFDTCVYYKRSDGGL-LIVAVWVDDFLIFSDNKKLKKQLKTHLTKTFKMTDMGAAKFVLGFQITRDRNSKKIWISQQAYLEQVLKRFNMENSNPSRIPMSSNE-KLSHQQEPKSEEERMKMNKIPYQEAVGSLLFASQVSRPDIAQAVNSVSRFNGNPGPAHWIAVKRILRYVRGTTDYKLQFDGNKSSVMHGYCDADWAADIDERRSLTGYIFVKCDAPISWCTKRQPTVALSTTEAEYMSLSAATQEALWLRGISLELMPASCIGPTRIFVDNEGARKLALN--GAYQARTKHIDVRHHFVRERIQKKEIELEYIPSAEMVADSLTKPLDAEKF 895
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A2N9H171_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9H171_FAGSY) HSP 1 Score: 241 bits (614), Expect = 1.990e-66 Identity = 151/448 (33.71%), Postives = 244/448 (54.46%), Query Frame = 1 Query: 22 PKDKLVVGTKMQRKIGQDG--KVQKYKCRLVAQGFWQVEGVHHTEKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EF--PGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVPT-LSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAVRAG---CGLC-------MEVYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQKF 1320 P+ + +G K KI +DG +V++Y+ RLV +GF Q EG+ E +SP ++ +LAM A D L D + FL +++EEIY+ PE F E V +LNK++ G +A RCW +F + S+G + +DPCV+ K ++L +YVDD+L ++ + L ++ ++KD+G A +G I R+R R++ L Q Y++ I +RF+++ IP + +S ++ P N E+ EM + PY VG+LM+ T PDIA AV G LC + Y D D+ LD ++ SG V LA GA+SW S++Q + A+ T AEY ++ E ++L+ + E +E + + F D+ A++LA N A +S +TKHI V++H VR+ + V + + ++D AD+LTKP++ KF Sbjct: 773 PQGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGFAQKEGIDFNEIFSPVVRLTTVRAVLAMCATFDLYLEQLDMKTAFLHGELEEEIYMLQPEGFEEKGKENLVCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRFGDGNFIILLLYVDDMLVAGPNKDCITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPTPLPINLKISSSMSPSNEAERMEMSQVPYASAVGSLMFAMVCTRPDIAQAVGVGTSNAALCYGGSDFTVRGYVDSDYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAIWLQMLLEELE--HKQEKIALFCDSQSALHLAKNP-AFHS-KTKHIRVQYHFVREKVEEGSVDIQKIHTKDNLADMLTKPINNDKF 1216
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A2N9IBB7_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IBB7_FAGSY) HSP 1 Score: 239 bits (610), Expect = 3.150e-66 Identity = 150/446 (33.63%), Postives = 241/446 (54.04%), Query Frame = 1 Query: 22 PKDKLVVGTKMQRKIGQDG--KVQKYKCRLVAQGFWQVEGVHHTEKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EF--PGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVKKATNIPAAAGVP-TLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAV--------RAGCGLCMEVYTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQKF 1320 P+ + +G K KI +DG +V++Y+ RLV +GF Q EG+ E +SP ++ +LAM A D L D + FL +++EEIY+ PE F E V +LNK++ G +A RCW +F + S+G + +DPCV+ K ++L +YVDD+L ++ + L ++ ++KD+G A +G I R+R R++ L Q Y++ I +RF+++ IP + LS ++ P N E+ EM + PY VG+LM+ T PDIA AV G + Y D D+ LD ++ SG V LA GA+SW S++Q + A+ T AEY ++ E ++L+ + E E + + F D+ A++LA N A +S +TKHI V++H VR+ + V + + ++D AD+LTKP++ KF Sbjct: 679 PQGRKAIGNKWVYKIKRDGNDQVERYRARLVVKGFAQKEGIDFNEIFSPVVRLTTVRVVLAMCATFDLYLEQLDVKTAFLHGELEEEIYMLQPEGFEEKGKENLVCKLNKSLYGLKQAPRCWYKRFDSFIMSLGYNRHSSDPCVYYKRFGDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPTPLPINFKLSSSMSPSNEAERMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMVNPGSDFTVRGYVDSDYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAIWLQMLLE--ELGHKQEKIALFCDSQSALHLAKNP-AFHS-KTKHIRVQYHFVREKVEEGSVDIQKIHTKDNLADMLTKPINNDKF 1120
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Match: A0A1Y1IQX0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQX0_KLENI) HSP 1 Score: 239 bits (611), Expect = 4.000e-66 Identity = 164/475 (34.53%), Postives = 251/475 (52.84%), Query Frame = 1 Query: 13 VARPKDKLVVGTKMQRKIGQD--GKVQKYKCRLVAQGFWQVEGVHHTEKYSPTSAAASIWTLLAMTAAKDGELRHFDAEHVFLKADIDEEIYIEIPEEF*EF-PGAVGRLNKAICGFVKAGRCWNNKFCEDMTSIGL*QAKADPCVFRKVVDGEAEMVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNRKARELKLDQHFYMEPIAKRFDVK--KATNIPAAAGVPTLSKAVEPRNPEEKEEMRKFPYRETVGALMWTATMTWPDIACAV---------------RAGCGLCMEV-------------------YTDLDFRACLDMRRTVSGAVLILAKGAISWDSRMQEVTASGTPTAEYATLSEVVNEVLFLRQVQEFMEP*RRVGAVDFFEDN*GAINLATNKHAINSLRTKHIDVKHHLVRDASDARKVRVAYVRSEDQHADLLTKPLDMQKF 1320 V +P+ V K KI QD G ++++K RLVA+GF Q +GV E Y+P S ++ LL + AA+D EL D + FL +++EEIY++ P+ + + P V RL K I G +A R W+ + ++ I +++D +F VVDGE V+ V+VDDIL A + + + L +K ++D+G A Y++G +TR+R+AR +KL Q + + R++++ KA + P ++G L K +P + K+PY E VG+L++ + T PDIA AV RA G+ + Y D D+ +D RR+ +G V ++ GA SW SR+Q A+ T AEY + + E L+LR++ +E GAV + DN GA+ L KH I S RTKHIDV HH VR+ R++R YV ++ AD+ TKPLD +F Sbjct: 871 VPKPEGVKPVPMKWVYKIKQDAAGNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPKTVCRLKKTIYGLRQAPRAWHQRLKAELGEIEFQASESDAALFTGVVDGERVWVV-VWVDDILIAAAGEKRLAKVKAHLSRKFDVRDLGPAEYFLGMELTRDRRARTVKLTQKKLTKELLGRYELEAAKARSTPLSSGE-KLQKEGDPL------DTGKYPYSELVGSLLYLSVCTRPDIAQAVGALARYMSGPTQEHWRAALGVVRYLSGTAELGVTFGGSAEPLVGYADADYAGDVDSRRSTTGYVFLVYGGAASWSSRLQPTVAASTVEAEYMSAASAAKEALWLRKLCGDLE--LPGGAVQIYGDNQGALQLL--KHPIASQRTKHIDVLHHFVRERVARRELRYEYVPTKQMVADVFTKPLDPGQF 1333 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig972.21055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig972.21055.1 >prot_F-serratus_M_contig972.21055.1 ID=prot_F-serratus_M_contig972.21055.1|Name=mRNA_F-serratus_M_contig972.21055.1|organism=Fucus serratus male|type=polypeptide|length=210bp MVLAVYVDDILAHAKDQATMDRFATGLGQKVKLKDMGDAGYYMGCHITRNback to top mRNA from alignment at F-serratus_M_contig972:213256..214683+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig972.21055.1 ID=mRNA_F-serratus_M_contig972.21055.1|Name=mRNA_F-serratus_M_contig972.21055.1|organism=Fucus serratus male|type=mRNA|length=1428bp|location=Sequence derived from alignment at F-serratus_M_contig972:213256..214683+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig972:213256..214683+ >mRNA_F-serratus_M_contig972.21055.1 ID=mRNA_F-serratus_M_contig972.21055.1|Name=mRNA_F-serratus_M_contig972.21055.1|organism=Fucus serratus male|type=CDS|length=1260bp|location=Sequence derived from alignment at F-serratus_M_contig972:213256..214683+ (Fucus serratus male)back to top |