mRNA_F-serratus_M_contig970.21042.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5JEM4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM4_9PHAE) HSP 1 Score: 119 bits (299), Expect = 9.820e-27 Identity = 62/203 (30.54%), Postives = 108/203 (53.20%), Query Frame = 1 Query: 1 DGKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 D ++ ++ R+ A+G ++ + + S P+ A I+ ++ A K + L H D +QA + A + + + + P+ G V + + +YGL GR W + D + G+ Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + + KF +KD+ + +Y GC I + + KL Q Y+ES++++ Sbjct: 342 DPQLIDFKARMVARGFSRIPDIDFYPSSSACPSAACIKTVIAEATEKGKNLAHWDVKQAYIHAKLKEEIYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVTA-DEGEREELFASLNKKFPVKDLEECTWYDGCAIAMDVENGLTKLSQTAYIESMLRR 543
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE) HSP 1 Score: 119 bits (299), Expect = 1.100e-26 Identity = 63/202 (31.19%), Postives = 109/202 (53.96%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ GV + S P+ SI+ +V V+ R H D +QA A + + + + +P + G + + +YGL GR W + D + + G+ Q + DPC+FRKVVDGE ++V+ VDDI+ A ++ + A+ + +F +KD+GD +Y GC I + + KL Q Y+ES++ + Sbjct: 176 GLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLAS-LQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNR 376
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE) HSP 1 Score: 119 bits (299), Expect = 1.200e-26 Identity = 63/202 (31.19%), Postives = 109/202 (53.96%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ GV + S P+ SI+ +V V+ R H D +QA A + + + + +P + G + + +YGL GR W + D + + G+ Q + DPC+FRKVVDGE ++V+ VDDI+ A ++ + A+ + +F +KD+GD +Y GC I + + KL Q Y+ES++ + Sbjct: 356 GLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLEQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLAS-LQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNR 556
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A5H2XSA6_PRUDU (RmlC-like cupins superfamily protein n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XSA6_PRUDU) HSP 1 Score: 116 bits (291), Expect = 1.220e-26 Identity = 65/203 (32.02%), Postives = 111/203 (54.68%), Query Frame = 1 Query: 1 DGKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQ-DFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVK 606 DG +E+Y+ RL A+G Q +G+ Y E +SPT ++R L+ +AAA+ L LD + A L +D+ + + P F+ V LNK +YGL R W ++ + + GF Q+K+D +F + G + +++ VDDI+ D AS+ + KF++KD+GD+ Y++G ++R+ R + + Q Y I+K Sbjct: 61 DGTIERYKARLVAKGYTQQEGLDYHETFSPTAKLVTVRCLLAIAAARHWPLHQLDVQNAFLHGHLDEEVYMLPPPGFRRQGENLVCRLNKSLYGLKQASRNWFSKFSNAIKMAGFIQSKADYSLFTRS-HGSSFTALLIYVDDIIITGNDPASIKSLMGVLHEKFRIKDLGDLKYFLGIEVSRS--KRGIVISQRKYTLDIIK 260
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE) HSP 1 Score: 119 bits (299), Expect = 1.310e-26 Identity = 63/202 (31.19%), Postives = 109/202 (53.96%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ GV + S P+ SI+ +V V+ R H D +QA A + + + + +P + G + + +YGL GR W + D + + G+ Q + DPC+FRKVVDGE ++V+ VDDI+ A ++ + A+ + +F +KD+GD +Y GC I + + KL Q Y+ES++ + Sbjct: 609 GLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLAS-LQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNR 809 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pages
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig970.21042.1 >prot_F-serratus_M_contig970.21042.1 ID=prot_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=polypeptide|length=103bp MTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATback to top mRNA from alignment at F-serratus_M_contig970:321282..322146+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig970.21042.1 ID=mRNA_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=mRNA|length=865bp|location=Sequence derived from alignment at F-serratus_M_contig970:321282..322146+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig970:321282..322146+ >mRNA_F-serratus_M_contig970.21042.1 ID=mRNA_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig970:321282..322146+ (Fucus serratus male)back to top |