mRNA_F-serratus_M_contig970.21042.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig970.21042.1
Unique NamemRNA_F-serratus_M_contig970.21042.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5JEM4_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM4_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 9.820e-27
Identity = 62/203 (30.54%), Postives = 108/203 (53.20%), Query Frame = 1
Query:    1 DGKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609
            D ++  ++ R+ A+G  ++  + +    S  P+ A I+ ++  A  K + L H D +QA + A + + + +  P+      G V  + + +YGL   GR W  +  D +   G+ Q + DPCVFRKVVDGE   ++V+ VDDIL  A D+   +     +  KF +KD+ +  +Y GC I  + +    KL Q  Y+ES++++
Sbjct:  342 DPQLIDFKARMVARGFSRIPDIDFYPSSSACPSAACIKTVIAEATEKGKNLAHWDVKQAYIHAKLKEEIYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILVTA-DEGEREELFASLNKKFPVKDLEECTWYDGCAIAMDVENGLTKLSQTAYIESMLRR 543          
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5KR39_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR39_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.100e-26
Identity = 63/202 (31.19%), Postives = 109/202 (53.96%), Query Frame = 1
Query:    4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609
            G +  ++ R+ A+G  Q+ GV +    S  P+  SI+ +V V+    R   H D +QA   A + + + + +P     + G    + + +YGL   GR W  +  D + + G+ Q + DPC+FRKVVDGE   ++V+ VDDI+  A ++   +  A+ +  +F +KD+GD  +Y GC I  + +    KL Q  Y+ES++ +
Sbjct:  176 GLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLAS-LQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNR 376          
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5L6D6_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D6_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.200e-26
Identity = 63/202 (31.19%), Postives = 109/202 (53.96%), Query Frame = 1
Query:    4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609
            G +  ++ R+ A+G  Q+ GV +    S  P+  SI+ +V V+    R   H D +QA   A + + + + +P     + G    + + +YGL   GR W  +  D + + G+ Q + DPC+FRKVVDGE   ++V+ VDDI+  A ++   +  A+ +  +F +KD+GD  +Y GC I  + +    KL Q  Y+ES++ +
Sbjct:  356 GLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLEQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLAS-LQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNR 556          
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A5H2XSA6_PRUDU (RmlC-like cupins superfamily protein n=2 Tax=Prunus dulcis TaxID=3755 RepID=A0A5H2XSA6_PRUDU)

HSP 1 Score: 116 bits (291), Expect = 1.220e-26
Identity = 65/203 (32.02%), Postives = 111/203 (54.68%), Query Frame = 1
Query:    1 DGKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQ-DFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVK 606
            DG +E+Y+ RL A+G  Q +G+ Y E +SPT    ++R L+ +AAA+   L  LD + A L   +D+ + +  P  F+      V  LNK +YGL    R W ++  + +   GF Q+K+D  +F +   G +   +++ VDDI+    D AS+      +  KF++KD+GD+ Y++G  ++R+   R + + Q  Y   I+K
Sbjct:   61 DGTIERYKARLVAKGYTQQEGLDYHETFSPTAKLVTVRCLLAIAAARHWPLHQLDVQNAFLHGHLDEEVYMLPPPGFRRQGENLVCRLNKSLYGLKQASRNWFSKFSNAIKMAGFIQSKADYSLFTRS-HGSSFTALLIYVDDIIITGNDPASIKSLMGVLHEKFRIKDLGDLKYFLGIEVSRS--KRGIVISQRKYTLDIIK 260          
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5K9E2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.310e-26
Identity = 63/202 (31.19%), Postives = 109/202 (53.96%), Query Frame = 1
Query:    4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609
            G +  ++ R+ A+G  Q+ GV +    S  P+  SI+ +V V+    R   H D +QA   A + + + + +P     + G    + + +YGL   GR W  +  D + + G+ Q + DPC+FRKVVDGE   ++V+ VDDI+  A ++   +  A+ +  +F +KD+GD  +Y GC I  + +    KL Q  Y+ES++ +
Sbjct:  609 GLIVDFKARMVARGFSQIPGVDFHHSSSACPSAVSIKTMVAVSTENGRRPVHWDIKQAYTHAKLKEEIYLRLPDGCGVWTGKAVKVERALYGLKQSGREWGFEAADALISNGYEQCRVDPCIFRKVVDGEVVGLIVIYVDDIMLSATEEEREELLAS-LQKRFPVKDLGDCTWYDGCAIEVDLENGTTKLSQTAYIESMLNR 809          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JEM4_9PHAE9.820e-2730.54Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KR39_9PHAE1.100e-2631.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5L6D6_9PHAE1.200e-2631.19Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5H2XSA6_PRUDU1.220e-2632.02RmlC-like cupins superfamily protein n=2 Tax=Prunu... [more]
A0A6H5K9E2_9PHAE1.310e-2631.19Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig970contigF-serratus_M_contig970:321282..322146 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score69.7
Seed ortholog evalue9e-10
Seed eggNOG ortholog5111.M1VW57
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs21AV1@147550,38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelSordariomycetes
Best eggNOG OGNA|NA|NA
Exons1
Model size865
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig970.21042.1prot_F-serratus_M_contig970.21042.1Fucus serratus malepolypeptideF-serratus_M_contig970 321606..321914 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932752.4154527-UTR-F-serratus_M_contig970:321281..3216051622932752.4154527-UTR-F-serratus_M_contig970:321281..321605Fucus serratus maleUTRF-serratus_M_contig970 321282..321605 +
1690964456.713789-UTR-F-serratus_M_contig970:321281..3216051690964456.713789-UTR-F-serratus_M_contig970:321281..321605Fucus serratus maleUTRF-serratus_M_contig970 321282..321605 +
1622932752.4593022-UTR-F-serratus_M_contig970:321914..3221461622932752.4593022-UTR-F-serratus_M_contig970:321914..322146Fucus serratus maleUTRF-serratus_M_contig970 321915..322146 +
1690964456.7407997-UTR-F-serratus_M_contig970:321914..3221461690964456.7407997-UTR-F-serratus_M_contig970:321914..322146Fucus serratus maleUTRF-serratus_M_contig970 321915..322146 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932752.438616-CDS-F-serratus_M_contig970:321605..3219141622932752.438616-CDS-F-serratus_M_contig970:321605..321914Fucus serratus maleCDSF-serratus_M_contig970 321606..321914 +
1690964456.7301335-CDS-F-serratus_M_contig970:321605..3219141690964456.7301335-CDS-F-serratus_M_contig970:321605..321914Fucus serratus maleCDSF-serratus_M_contig970 321606..321914 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig970.21042.1

>prot_F-serratus_M_contig970.21042.1 ID=prot_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFAT
EVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKKVRRQE
GN*
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mRNA from alignment at F-serratus_M_contig970:321282..322146+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig970.21042.1 ID=mRNA_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=mRNA|length=865bp|location=Sequence derived from alignment at F-serratus_M_contig970:321282..322146+ (Fucus serratus male)
GACGGCAAGGTTGAGAAGTACCAGTGTCGACTTGATGCTCAAGGGCTCTG GCAGGTGAAAGGTGTACACTACACGGAAAAGTACTCACCCACGCCAGCGA CCGCGTCAATCCGGATGCTTGTGAGGGTGGCGGCGGCCAAGGACAGAGAG CTGCGCCATTTAGACGCGGAGCAGGCATCTTTGAAGGCGGATATTGACGA TACAATGTGCATTGAGATCCCCAAGTAGTTCCAGGATTTTCCGGGGGCAG TGGGAGGACTGAACAAGGACATTTACGGACTCGGGTAGGTGGGAAGGTGT TGGAACAACCAGTTATGTGACGACATGACGGCAATTGGATTCGCGCAGGC AAAATCGGATCCGTGTGTGTTCCGCAAGGTCGTTGACGGCGAGGCGGAGA TGGTAGTAGTTGTACTCGTAGACGACATTCTTGCCCACGCTAAAGACCAG GCGTCGATGGATAGATTCGCGACTGAGGTTGGACATAAGTTCAAATTGAA GGACATGGGCGACGTCGGGTACTACATGGGCTGTCACATCACAAGGAACT GCAAGGCGCGCGAGTTGAAGCTCGACCAACACTTGTACGTGGAGTCGATA GTAAAAAAGGTTCGACGTCAAGAAGGCAACTAAGATACTGGCTGCGTTAG GGGTGTCAACGCTCTCAAAGGCGGACGAACCGCGAAACTCAGAGGAGAAG AAGGAAATGAGGAAGTTCCCGTACCAGGCGGCAGTGGGGGCGCTTATGTG GACGGCGACGATGACACGGCCGGGCATTGCGTGCACCGTACGCGCTGTGG CCAGGTTCTGCGAAAACCCCGGGCTGGCGCATAAGAAGGCAGTGATAAAG ACCTTGCAGTATCTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig970:321282..322146+

>mRNA_F-serratus_M_contig970.21042.1 ID=mRNA_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig970:321282..322146+ (Fucus serratus male)
ATGACGGCAATTGGATTCGCGCAGGCAAAATCGGATCCGTGTGTGTTCCG
CAAGGTCGTTGACGGCGAGGCGGAGATGGTAGTAGTTGTACTCGTAGACG
ACATTCTTGCCCACGCTAAAGACCAGGCGTCGATGGATAGATTCGCGACT
GAGGTTGGACATAAGTTCAAATTGAAGGACATGGGCGACGTCGGGTACTA
CATGGGCTGTCACATCACAAGGAACTGCAAGGCGCGCGAGTTGAAGCTCG
ACCAACACTTGTACGTGGAGTCGATAGTAAAAAAGGTTCGACGTCAAGAA
GGCAACTAAATGACGGCAATTGGATTCGCGCAGGCAAAATCGGATCCGTG
TGTGTTCCGCAAGGTCGTTGACGGCGAGGCGGAGATGGTAGTAGTTGTAC
TCGTAGACGACATTCTTGCCCACGCTAAAGACCAGGCGTCGATGGATAGA
TTCGCGACTGAGGTTGGACATAAGTTCAAATTGAAGGACATGGGCGACGT
CGGGTACTACATGGGCTGTCACATCACAAGGAACTGCAAGGCGCGCGAGT
TGAAGCTCGACCAACACTTGTACGTGGAGTCGATAGTAAAAAAGGTTCGA
CGTCAAGAAGGCAACTAA
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