mRNA_F-serratus_M_contig970.21042.1 (mRNA) Fucus serratus male
Overview
Homology
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5KY81_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY81_9PHAE) HSP 1 Score: 125 bits (315), Expect = 1.350e-29 Identity = 66/202 (32.67%), Postives = 108/202 (53.47%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ G+ + S P ASI+ ++ VA K ++L H D +QA + A +++ + + P+ G V + + +YGL GR W + D + G+ Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + + F +K MG+ + GC I + KL Q Y+ES++K+ Sbjct: 161 GLIVDFKARMVARGFSQIPGIDFHHSSSACPPAASIKTMIAVATEKGKKLDHWDVKQAYIHATLNEEIYLRFPEGHGSMSGKVVKVERALYGLKQSGREWGVEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREGLFASLNKNFPVKGMGECTWVDGCAIAMDVDNGIPKLSQTAYIESMLKR 361
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A1Y1IVX6_KLENI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IVX6_KLENI) HSP 1 Score: 127 bits (320), Expect = 2.170e-29 Identity = 69/193 (35.75%), Postives = 113/193 (58.55%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*F-QDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQ 579 G +E+++ RL A+G Q +GV + E Y+P ++R L+ V AA+D EL LD + A L ++++ + ++ P+ + Q P V L K IYGL R W+ +L ++ I F ++SD +F V+DGE + VVV VDDIL AK + + + + KF ++D+G Y++G +TR+ +AR +KL Q Sbjct: 619 GNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPETVCRLKKTIYGLRQAPRAWHQKLKTELGEIEFRASESDAALFTGVIDGE-RVWVVVWVDDILIAAKGEQRLAKVKAHLSEKFDVRDLGPAEYFLGMELTRDRRARTIKLTQ 810
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5JXE8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXE8_9PHAE) HSP 1 Score: 125 bits (314), Expect = 3.390e-29 Identity = 63/202 (31.19%), Postives = 110/202 (54.46%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G ++ G+ + S P+ ASI+ ++ VA K ++L H D +QA + A +++ + + P+ + G V + + +YG GR W + D + G+ Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + + K +KD+G+ +Y GC + + KL Y+ES++K+ Sbjct: 75 GLIVDFKARMVARGFSRIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLEEEIYLRFPEGCRGMSGKVVKVERALYGPKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKVPVKDLGECTWYDGCATAMDVENGIAKLSHTAYIESMLKR 275
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5K1G1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1G1_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.080e-28 Identity = 66/202 (32.67%), Postives = 108/202 (53.47%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + + R+ A+ Q+ G+ + S P+ ASI+ ++ VA K ++L H D +QA + A + + + P+ G V + + +YGL GR W + D + + Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + + KF +KD+G+ +Y GC I + + KL Q Y+ES++K+ Sbjct: 75 GLIVDNKARMVARVFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAMLKEETYLRFPEGCGSISGKVVKVERALYGLKQSGREWGFEAADALIESEYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIESMLKR 275
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5JDR8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDR8_9PHAE) HSP 1 Score: 124 bits (312), Expect = 1.670e-28 Identity = 66/202 (32.67%), Postives = 109/202 (53.96%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 G + ++ R+ A+G Q+ G+ + S P+ ASI+ ++ VA K ++L H D +QA + + + + P+ G V + + +YGL GR W + D + G+ Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + + KF +KD+G+ +Y GC I + + KL Q Y+E ++K+ Sbjct: 59 GLIVDFKARMVARGFSQIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHVKLKEEN-LRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNMKFPVKDLGECTWYDGCAIAMDVENGITKLSQTAYIEIMLKR 258
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A1Y1IQX0_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQX0_KLENI) HSP 1 Score: 125 bits (313), Expect = 1.930e-28 Identity = 69/193 (35.75%), Postives = 112/193 (58.03%), Query Frame = 1 Query: 4 GKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*F-QDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQ 579 G +E+++ RL A+G Q +GV + E Y+P ++R L+ V AA+D EL LD + A L ++++ + ++ P+ + Q P V L K IYGL R W+ +L ++ I F ++SD +F VVDGE + VVV VDDIL A + + + + KF ++D+G Y++G +TR+ +AR +KL Q Sbjct: 894 GNIERFKSRLVAKGFLQRQGVDFEEVYAPVSKHTTLRALLGVVAARDLELHQLDVKTAFLNGELEEEIYMQQPQGYEQGGPKTVCRLKKTIYGLRQAPRAWHQRLKAELGEIEFQASESDAALFTGVVDGE-RVWVVVWVDDILIAAAGEKRLAKVKAHLSRKFDVRDLGPAEYFLGMELTRDRRARTVKLTQ 1085
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A2B4R8Q4_STYPI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4R8Q4_STYPI) HSP 1 Score: 124 bits (310), Expect = 4.540e-28 Identity = 75/212 (35.38%), Postives = 116/212 (54.72%), Query Frame = 1 Query: 1 DGKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGA---VGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVF-RKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKKVRRQE 624 DG VE+++ L A+G Q G+ Y E +SP +SIR L+ A D + +D E A L +D+ + ++ P+ + PG V L K +YGL RCWN L + + IGF QA DPCVF RK +A + V VDD++ A++ M + +FK+KDMG++ YY+G I ++ K +++ L Q YVE +++K + E Sbjct: 570 DGTVERFKAGLVAKGYTQKYGIDYDETFSPVVRFSSIRYLLAFAVQNDLLIHQMDVETAFLNGKLDEEIYMQQPEGYMK-PGEEHLVCKLEKSLYGLKQSSRCWNKVLRECIEKIGFIQASEDPCVFIRK----DALTITGVHVDDLMILARNITEMRSVKDSLKLQFKMKDMGELHYYVGVCIVQDVKNKQVFLHQGHYVEKMLEKFGQTE 776
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5J7P7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7P7_9PHAE) HSP 1 Score: 121 bits (303), Expect = 1.840e-27 Identity = 65/203 (32.02%), Postives = 108/203 (53.20%), Query Frame = 1 Query: 1 DGKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 +G ++ R+ A+G Q+ G+ + P+ ASI+ ++ VA K ++L D +QA + A + + + + P+ G V + + +YGL GR W + D + G+ Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + + KF +KD+G+ +Y GC I + L Q Y+ES++K+ Sbjct: 202 NGLTVDFKARMVARGFSQIPGIDFHHSSLACPSAASIKTVIAVATEKGKKLAQWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWWFEAADALIENGYEQCRVDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKKFPVKDLGECTWYDGCAIA-------MDLSQTAYIESMLKR 396
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: Q9XII7_ARATH (Putative retroelement pol polyprotein n=1 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9XII7_ARATH) HSP 1 Score: 120 bits (301), Expect = 7.600e-27 Identity = 60/188 (31.91%), Postives = 110/188 (58.51%), Query Frame = 1 Query: 1 DGKVEKYQCRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPG------AVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITR 546 DG +E+Y+ RL A+G Q +G+ YT+ +SP +I++L++V+A+K L+ LD A L ++++ + ++IP+ + + G V L + IYGL R W + + ++GF + D +F K+ DGE ++V+V VDDI+ + +A+ + E+ +FKL+D+GD+ Y++G + R Sbjct: 994 DGNLERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNGELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKTHGDHTLFLKMYDGEF-VIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGLEVAR 1180
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Match: A0A6H5KZ30_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ30_9PHAE) HSP 1 Score: 118 bits (295), Expect = 9.640e-27 Identity = 62/195 (31.79%), Postives = 105/195 (53.85%), Query Frame = 1 Query: 25 CRLDAQGLWQVKGVHYTEKYSPTPATASIRMLVRVAAAKDRELRHLDAEQASLKADIDDTMCIEIPK*FQDFPGAVGGLNKDIYGLG*VGRCWNNQLCDDMTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATEVGHKFKLKDMGDVGYYMGCHITRNCKARELKLDQHLYVESIVKK 609 R+ A+G Q+ G+ + + S P+ ASI+ ++ VA K ++L D +QA + A + + + + P+ G V + + +YGL GR W + D + + Q + DPCVFRKVVDGE ++V+ VDDIL A D+ + + +F +KD+G+ +Y C I + + KL Q +ES++K+ Sbjct: 176 ARMVARGFSQIPGIDFHKSSSACPSAASIKTVIAVATEKGKKLAQWDVKQAYIHAKLKEEIYLRFPEGCGSMSGKVVKVERALYGLKQSGREWGFEAADALMENAYEQCRFDPCVFRKVVDGEVVGLIVIYVDDILV-AADEGEREELFASLNKRFSVKDLGECTWYDRCAIAMDVENSIPKLSQTACIESMLKR 369 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig970.21042.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig970.21042.1 >prot_F-serratus_M_contig970.21042.1 ID=prot_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=polypeptide|length=103bp MTAIGFAQAKSDPCVFRKVVDGEAEMVVVVLVDDILAHAKDQASMDRFATback to top mRNA from alignment at F-serratus_M_contig970:321282..322146+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig970.21042.1 ID=mRNA_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=mRNA|length=865bp|location=Sequence derived from alignment at F-serratus_M_contig970:321282..322146+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig970:321282..322146+ >mRNA_F-serratus_M_contig970.21042.1 ID=mRNA_F-serratus_M_contig970.21042.1|Name=mRNA_F-serratus_M_contig970.21042.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig970:321282..322146+ (Fucus serratus male)back to top |