mRNA_F-serratus_M_contig97.21000.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-serratus_M_contig97.21000.1
Unique Name	mRNA_F-serratus_M_contig97.21000.1
Type	mRNA
Organism	Fucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))

Homology

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BLAST of mRNA_F-serratus_M_contig97.21000.1 vs. uniprot
Match: D7G6B6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6B6_ECTSI)

HSP 1 Score: 210 bits (535), Expect = 2.180e-64
Identity = 109/180 (60.56%), Postives = 130/180 (72.22%), Query Frame = 3

Query:   96 MADRRARRRTNSRKVHAEDGIQKAKPGEIADMLHMDMMAHRKKTADFNASWKRVLCFAALGLSGVSILKAIEKASEGDPGWMERCLTSANAGLIAAWVALVDLVNHRARSTSLFVKLTVFALSLYQLVAWWNSREGGGQPDFPVAVILFIVAVXXXXSMESTLETAEKAFRASGSLANKV 635
            M D   RRRT   KV  EDGIQ+ +PGEIA +LHMDM AH+KKTADFN  WKR L FA++GL+ VS+LKA+EKA EGD GW+ER LTSANAGLI  WV+ VDL   +A  + L+ K+  FA+SLYQLV+WW SR+     DFPVAVIL IV V    SM+S L  A+ AFRAS +LA KV
Sbjct:    1 MRDGNPRRRTARTKVQTEDGIQRPRPGEIAHLLHMDMAAHQKKTADFNNGWKRALLFASIGLAAVSLLKAVEKAREGDLGWLERGLTSANAGLIGFWVSQVDLQTDKA--SLLYCKIAAFAVSLYQLVSWWTSRQSEIHVDFPVAVILLIVVVASVASMKSALNEADNAFRASEALAEKV 178

The following BLAST results are available for this feature:

BLAST of mRNA_F-serratus_M_contig97.21000.1 vs. uniprot

BLAST of mRNA_F-serratus_M_contig97.21000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7G6B6_ECTSI	2.180e-64	60.56	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-serratus_M_contig97	contig	F-serratus_M_contig97:15691..18057 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90	2022-09-19
OGS1.0 of Fucus serratus male	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	3
Model size	984
Cds size	561
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-serratus_M_contig97.21000.1	prot_F-serratus_M_contig97.21000.1	Fucus serratus male	polypeptide	F-serratus_M_contig97 15786..17729 +

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932744.7810824-UTR-F-serratus_M_contig97:15690..15785	1622932744.7810824-UTR-F-serratus_M_contig97:15690..15785	Fucus serratus male	UTR	F-serratus_M_contig97 15691..15785 +
1690964452.6933277-UTR-F-serratus_M_contig97:15690..15785	1690964452.6933277-UTR-F-serratus_M_contig97:15690..15785	Fucus serratus male	UTR	F-serratus_M_contig97 15691..15785 +
1622932744.862945-UTR-F-serratus_M_contig97:17729..18057	1622932744.862945-UTR-F-serratus_M_contig97:17729..18057	Fucus serratus male	UTR	F-serratus_M_contig97 17730..18057 +
1690964452.7494595-UTR-F-serratus_M_contig97:17729..18057	1690964452.7494595-UTR-F-serratus_M_contig97:17729..18057	Fucus serratus male	UTR	F-serratus_M_contig97 17730..18057 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622932744.8018064-CDS-F-serratus_M_contig97:15785..15839	1622932744.8018064-CDS-F-serratus_M_contig97:15785..15839	Fucus serratus male	CDS	F-serratus_M_contig97 15786..15839 +
1690964452.7154675-CDS-F-serratus_M_contig97:15785..15839	1690964452.7154675-CDS-F-serratus_M_contig97:15785..15839	Fucus serratus male	CDS	F-serratus_M_contig97 15786..15839 +
1622932744.8213482-CDS-F-serratus_M_contig97:17031..17133	1622932744.8213482-CDS-F-serratus_M_contig97:17031..17133	Fucus serratus male	CDS	F-serratus_M_contig97 17032..17133 +
1690964452.7266908-CDS-F-serratus_M_contig97:17031..17133	1690964452.7266908-CDS-F-serratus_M_contig97:17031..17133	Fucus serratus male	CDS	F-serratus_M_contig97 17032..17133 +
1622932744.8410532-CDS-F-serratus_M_contig97:17324..17729	1622932744.8410532-CDS-F-serratus_M_contig97:17324..17729	Fucus serratus male	CDS	F-serratus_M_contig97 17325..17729 +
1690964452.7376413-CDS-F-serratus_M_contig97:17324..17729	1690964452.7376413-CDS-F-serratus_M_contig97:17324..17729	Fucus serratus male	CDS	F-serratus_M_contig97 17325..17729 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-serratus_M_contig97:15691..18057+
coding sequence from alignment at F-serratus_M_contig97:15691..18057+

protein sequence of mRNA_F-serratus_M_contig97.21000.1

>prot_F-serratus_M_contig97.21000.1 ID=prot_F-serratus_M_contig97.21000.1|Name=mRNA_F-serratus_M_contig97.21000.1|organism=Fucus serratus male|type=polypeptide|length=187bp
MADRRARRRTNSRKVHAEDGIQKAKPGEIADMLHMDMMAHRKKTADFNAS
WKRVLCFAALGLSGVSILKAIEKASEGDPGWMERCLTSANAGLIAAWVAL
VDLVNHRARSTSLFVKLTVFALSLYQLVAWWNSREGGGQPDFPVAVILFI
VAVVAIASMESTLETAEKAFRASGSLANKVGQGSRR*

mRNA from alignment at F-serratus_M_contig97:15691..18057+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-serratus_M_contig97.21000.1 ID=mRNA_F-serratus_M_contig97.21000.1|Name=mRNA_F-serratus_M_contig97.21000.1|organism=Fucus serratus male|type=mRNA|length=2367bp|location=Sequence derived from alignment at F-serratus_M_contig97:15691..18057+ (Fucus serratus male)
CTTGGTCAACCATCAGCCAGAGGGCAAGAGTACCGGTATCCCGGAGAAAT
TTTGACCTATTTGCTGATCTAATAAGCTTTTGTGCTTGCTTCAGTATGGC
CGACAGAAGAGCTAGGCGTCGAACCAACTCAAGAAAAGTACACGCTGAGG
TGCGGTATAGTTGATTTATGTTATATTTATGACCACAGTTTGTACTGCTG
TGGTGGTACGTGGAGTATGTAGAAATGGCGCTTGCGTCTCTGATAATAAT
AGTTAGTTAGACTACATGTGTAGTGACTGCAGTAATTTCATGATGCTGCA
TGTAAGCTTGTCGGGGTTCGTCGTTCTCCGCTATTACGGTAATACAAGAC
ACAGGTTACTGTATTAAGTGGTTTGCAATACCTACATGTAAACCGTGTGG
ACGACCCTGCTCCGCACTGTACTGCTGTATACTCCATGTTGACCAGATTT
AGGACATAGATTCGACACAAAGCGGTACACCGGCTTGCCTCCTAATTGAA
GAAAACACTTCATGCGGGATATAGACCTGATGGCAGCACTGCTGTATCTT
AAAAAGTACCTCGTGGAACTATTTGTACTACAGTATATTGCACGTTCATC
CGCTGACCGGTACAAGTAGCCCTGGCTATGACTGGCTCTATTGTATAGCG
TTCATGATCAAATGATGGGTACCACGACGTGTCATTTTCCTCTTTGGGCG
CTCCAACTCTCCCCAACACCAGCTATATATGTATGTATGCATGTATAGAT
GGTCATCACATATAGCAGAGTATGGATCAACCGGGTAAGGTTGCCAATCC
TACTCGTGGTCAGCTGAACAGGAAAAATAATATTCCCCTGTCCCCGTGCG
TGCCTGAGAATTTGGTCTCGCGAGACGGGTTCAGCCTTACCGTGCCGCGT
CAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCTTACTTACAGGA
TTTCTCCCGAGTTCCGCGGCGGCGTCCATTTATGAAACCGCCATACGCCA
TCGGGTCAGTCCCGAGTGTATCGGGTCACGCAATTGCGTACCGATGGCGT
TCACTACCGAGAGTCCGCCGGCACAGGGTCAGTAAACCTCAAGGAAGTTC
CGAACGAGTGCTGCCTTGGCAGGTCACCATGGACCAATTAATATCCGCCT
CTCTTTCCACACCCACCATTGGTATGAAGTGGGCATGTTGAAAGTACCGG
CAAATGTACCTGCCGATGAGCCTCTGTCATGTGCCGTGGTATTCTTTTCC
TTTCATGATTTATTAATATCAATTCTACAGTATTAACTTTTGACGTGCTT
TCATGGCTTGACTTGTAATGATTAATGTTCCTAAAAAGCAGGATGGGATT
CAGAAAGCGAAGCCCGGGGAGATTGCAGACATGCTGCACATGGATATGAT
GGCTCATCGGAAGAAAACCGCCGACTTCAACGCCTCCTGGAAGGTACGCT
GACTTGACATATATTCAAGTTGTTGTATCTGGGATGGCCCATGTTTAGCT
ATGATAAGGCGTTGTAACTCTGTAGAGATGTAATCCCACTCTCTCTCAAC
AGTGTGTATCTGGGTGCAGTATGAACCCGATTTTGGCTCCGTCGCAAGAT
TCCCGTCAACCGCAATCTCGTTCTCTGGTTGCAGCGTGTGCTCTGCTTCG
CTGCCCTTGGGCTGTCGGGGGTGAGCATACTCAAGGCGATCGAGAAGGCG
AGCGAGGGGGATCCCGGCTGGATGGAGCGCTGCTTGACGTCAGCTAACGC
CGGCTTGATCGCCGCATGGGTGGCGCTGGTCGATCTGGTTAATCATCGAG
CACGGAGTACGTCTCTGTTTGTTAAATTGACTGTGTTCGCCTTGTCTCTC
TACCAGCTGGTGGCTTGGTGGAACAGTCGTGAGGGTGGAGGGCAACCAGA
CTTCCCGGTTGCGGTCATACTCTTTATTGTTGCCGTAGTCGCTATCGCCT
CCATGGAGTCCACTCTCGAGACTGCCGAGAAAGCGTTCCGAGCAAGCGGC
TCACTTGCTAACAAAGTAGGGCAAGGGAGTCGTCGGTAGAAATGTCATGC
GTGGGATCCTGCCCTGCCCTACCCCGCTCGGGTAAGGTCATTCGATATCG
TCTTCGGTCTCCTTGGGGTACCTGGTGGGCACAGCCGTTGTTAGGTGTAC
GTGTAACAACTTGTAGCTTCGCCCGTCCGTCTCATTTCTAGCTTCCATTT
CTGCCGTTTGGTAGTACCTGACCGCGTCGGGGGCGACGATCAAGCTGTAT
TTCACTTGTCGTTGTCCTGTAAATTGAACCAAGTAATTGAATCACTTATT
CGGTACAGTAGCCTGCGTAATAAGAGCTGGAACACCTAAATCTGGACATG
CAATTCAACATACCTCC

Coding sequence (CDS) from alignment at F-serratus_M_contig97:15691..18057+

>mRNA_F-serratus_M_contig97.21000.1 ID=mRNA_F-serratus_M_contig97.21000.1|Name=mRNA_F-serratus_M_contig97.21000.1|organism=Fucus serratus male|type=CDS|length=1122bp|location=Sequence derived from alignment at F-serratus_M_contig97:15691..18057+ (Fucus serratus male)
ATGGCCGACAGAAGAGCTAGGCGTCGAACCAACTCAAGAAAAGTACACGC
TGAGATGGCCGACAGAAGAGCTAGGCGTCGAACCAACTCAAGAAAAGTAC
ACGCTGAGGATGGGATTCAGAAAGCGAAGCCCGGGGAGATTGCAGACATG
CTGCACATGGATATGATGGCTCATCGGAAGAAAACCGCCGACTTCAACGC
CTCCTGGAAGGATGGGATTCAGAAAGCGAAGCCCGGGGAGATTGCAGACA
TGCTGCACATGGATATGATGGCTCATCGGAAGAAAACCGCCGACTTCAAC
GCCTCCTGGAAGCGTGTGCTCTGCTTCGCTGCCCTTGGGCTGTCGGGGGT
GAGCATACTCAAGGCGATCGAGAAGGCGAGCGAGGGGGATCCCGGCTGGA
TGGAGCGCTGCTTGACGTCAGCTAACGCCGGCTTGATCGCCGCATGGGTG
GCGCTGGTCGATCTGGTTAATCATCGAGCACGGAGTACGTCTCTGTTTGT
TAAATTGACTGTGTTCGCCTTGTCTCTCTACCAGCTGGTGGCTTGGTGGA
ACAGTCGTGAGGGTGGAGGGCAACCAGACTTCCCGGTTGCGGTCATACTC
TTTATTGTTGCCGTAGTCGCTATCGCCTCCATGGAGTCCACTCTCGAGAC
TGCCGAGAAAGCGTTCCGAGCAAGCGGCTCACTTGCTAACAAAGTAGGGC
AAGGGAGTCGTCGGTAGCGTGTGCTCTGCTTCGCTGCCCTTGGGCTGTCG
GGGGTGAGCATACTCAAGGCGATCGAGAAGGCGAGCGAGGGGGATCCCGG
CTGGATGGAGCGCTGCTTGACGTCAGCTAACGCCGGCTTGATCGCCGCAT
GGGTGGCGCTGGTCGATCTGGTTAATCATCGAGCACGGAGTACGTCTCTG
TTTGTTAAATTGACTGTGTTCGCCTTGTCTCTCTACCAGCTGGTGGCTTG
GTGGAACAGTCGTGAGGGTGGAGGGCAACCAGACTTCCCGGTTGCGGTCA
TACTCTTTATTGTTGCCGTAGTCGCTATCGCCTCCATGGAGTCCACTCTC
GAGACTGCCGAGAAAGCGTTCCGAGCAAGCGGCTCACTTGCTAACAAAGT
AGGGCAAGGGAGTCGTCGGTAG