mRNA_F-serratus_M_contig969.20999.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig969.20999.1
Unique NamemRNA_F-serratus_M_contig969.20999.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Match: A0A6H5L1Z9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z9_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 2.410e-78
Identity = 133/240 (55.42%), Postives = 169/240 (70.42%), Query Frame = 1 
Query:    1 PKKTMRKTIRPMQLVYTDLMGLFTPAAKGG---YRFVSKFTDDYSRMKEIFLLKNKTEAAESLHQ*NMTVAAPLGLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNGVSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEATPYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSKAYRIHIPAKGTVVESRNATFLET 711
            PKKT R   +P QLV  D MG   P AK     Y +V+K TD ++RM+E++LL+++TE  ++LH  NM VA+  G RIE LRCDKGGE TG+  R  C  + I +E+ ATNTPQ+ GVSERDG TLA +TR L++ G+FP  MWGELM TA YL NR+PH+ L  ATPYS++++  PDL+ LRAIG RAFVH + Y KKL++R FEGKLC Y   SK YRI++  K  V ESRN TF+ET
Sbjct:  598 PKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRTFEGKLCGYGPGSKTYRIYVEGKDKVYESRNVTFIET 836
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BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 1.290e-77
Identity = 133/240 (55.42%), Postives = 169/240 (70.42%), Query Frame = 1 
Query:    1 PKKTMRKTIRPMQLVYTDLMGLFTPAAKGG---YRFVSKFTDDYSRMKEIFLLKNKTEAAESLHQ*NMTVAAPLGLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNGVSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEATPYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSKAYRIHIPAKGTVVESRNATFLET 711
            PKKT R   +P QLV  D MG   P AK     Y +V+K TD ++RM+E++LL+++TE  ++LH  NM VA+  G RIE LRCDKGGE TG+  R  C  + I +E+ ATNTPQ+ GVSERDG TLA +TR L++ G+FP  MWGELM TA YL NR+PH+ L  ATPYS++++  PDL+ LRAIG RAFVH + Y KKL++R FEGKLC Y   SK YRI++  K  V ESRN TF+ET
Sbjct:  598 PKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRTFEGKLCGYGPGSKTYRIYVEGKDKVYESRNVTFIET 836
[Close]
BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Match: A0A6H5JTQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTQ0_9PHAE)

HSP 1 Score: 262 bits (670), Expect = 5.980e-77
Identity = 133/240 (55.42%), Postives = 170/240 (70.83%), Query Frame = 1 
Query:    1 PKKTMRKTIRPMQLVYTDLMGLFTPAAKGG---YRFVSKFTDDYSRMKEIFLLKNKTEAAESLHQ*NMTVAAPLGLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNGVSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEATPYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSKAYRIHIPAKGTVVESRNATFLET 711
            PKKT R   +P QLV  D MG   P AK     Y +V+K TD ++RM+E++LL+++TE  ++LH  NM VA+  G RIE LRCDKGGE TG+  R  C  + I +E+ ATNTPQ+ GVSERDG TLA +TR L++ G+FP  MWGELM TA YL NR+PH+ L  ATPYS++++  PDL+ LRAIG RAFV+ + Y KKL +RAFEGKLC Y  +SK YRI++  K  V ESRN TF+ET
Sbjct:  598 PKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVYHERYKKKLVDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 836
[Close]
BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Match: A0A6H5K8D4_9PHAE (Uncharacterized protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8D4_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 3.720e-76
Identity = 131/240 (54.58%), Postives = 168/240 (70.00%), Query Frame = 1 
Query:    1 PKKTMRKTIRPMQLVYTDLMGLFTPAAKGG---YRFVSKFTDDYSRMKEIFLLKNKTEAAESLHQ*NMTVAAPLGLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNGVSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEATPYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSKAYRIHIPAKGTVVESRNATFLET 711
            PKKT R   +P QLV  D MG   P AK     Y +V+K TD ++RM+E++LL+++TE  ++LH  NM VA+  G RIE LRCDKGGE T +  R  C  + I +E+ ATNTPQ+ GVSERDG TLA +TR L++ G+FP  MWGE M TA  L NR+PH+ L  ATPYS++++  PDL+ LRAIG RAFVH + Y KKL++RAFEGKLC Y  +SK YRI++  K  V ESRN TF+ET
Sbjct:  698 PKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGENTREEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFPKHMWGERMMTAACLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGARAFVHHERYKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 936
[Close]
BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Match: A0A6H5JVR1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR1_9PHAE)

HSP 1 Score: 257 bits (657), Expect = 7.320e-76
Identity = 131/240 (54.58%), Postives = 169/240 (70.42%), Query Frame = 1 
Query:    1 PKKTMRKTIRPMQLVYTDLMGLFTPAAKGG---YRFVSKFTDDYSRMKEIFLLKNKTEAAESLHQ*NMTVAAPLGLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNGVSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEATPYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSKAYRIHIPAKGTVVESRNATFLET 711
            PKKT R   +P QLV  D MG   P AK     Y +V+K TD ++RM+E++LL+++TE  ++LH  NM VA+  G RIE LRCDKGG  TG+  R  C  + I +E+ ATNTPQ+ GVSERDG TLA +TR L++ G+F   +WGELM TA YL NR+PH+ L  ATPYS++++  PDL+ LRAIGT AFVH + Y KKL++RAFEGKLC Y  +SK YRI++  K  V ESRN TF+ET
Sbjct:  401 PKKTSRVLTKPGQLVQFDNMGPIDPPAKYNGRTYSYVAKATDVFTRMREVYLLRDRTETTQALHAYNMQVASE-GYRIEVLRCDKGGVNTGEEMRNYCRESAIKLEFAATNTPQEIGVSERDGQTLAAVTRALLRDGDFLKHIWGELMMTAAYLTNRTPHAALGGATPYSKMYNTTPDLSRLRAIGTPAFVHHERYKKKLDDRAFEGKLCGYGPDSKTYRIYVEGKDKVYESRNVTFIET 639
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig969.20999.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1Z9_9PHAE2.410e-7855.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG5_9PHAE1.290e-7755.42Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5JTQ0_9PHAE5.980e-7755.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8D4_9PHAE3.720e-7654.58Uncharacterized protein (Fragment) n=2 Tax=Ectocar... [more]
A0A6H5JVR1_9PHAE7.320e-7654.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig969contigF-serratus_M_contig969:279436..280146 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score119.8
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog4558.Sb07g028153.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GAG-pre-integrase domain
EggNOG OGs37THH@33090,3GG2K@35493,3IMWS@38820,3M2QC@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Exons1
Model size711
Cds size519
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932744.1170745-CDS-F-serratus_M_contig969:279435..2799541622932744.1170745-CDS-F-serratus_M_contig969:279435..279954Fucus serratus maleCDSF-serratus_M_contig969 279436..279954 -
1690964452.472387-CDS-F-serratus_M_contig969:279435..2799541690964452.472387-CDS-F-serratus_M_contig969:279435..279954Fucus serratus maleCDSF-serratus_M_contig969 279436..279954 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932744.1297276-UTR-F-serratus_M_contig969:279954..2801461622932744.1297276-UTR-F-serratus_M_contig969:279954..280146Fucus serratus maleUTRF-serratus_M_contig969 279955..280146 -
1690964452.4897738-UTR-F-serratus_M_contig969:279954..2801461690964452.4897738-UTR-F-serratus_M_contig969:279954..280146Fucus serratus maleUTRF-serratus_M_contig969 279955..280146 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig969.20999.1prot_F-serratus_M_contig969.20999.1Fucus serratus malepolypeptideF-serratus_M_contig969 279436..279954 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig969.20999.1

>prot_F-serratus_M_contig969.20999.1 ID=prot_F-serratus_M_contig969.20999.1|Name=mRNA_F-serratus_M_contig969.20999.1|organism=Fucus serratus male|type=polypeptide|length=173bp
MTVAAPLGLRIENLRCDKGGEYTGQGFRTLCVGAGINIEYTATNTPQQNG
VSERDGHTLAKITRCLVKGGEFPPFMWGELMFTATYLANRSPHSTLEEAT
PYSQIHSLEPDLTGLRAIGTRAFVHRDTYTKKLEERAFEGKLCRYSHNSK
AYRIHIPAKGTVVESRNATFLET
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mRNA from alignment at F-serratus_M_contig969:279436..280146-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig969.20999.1 ID=mRNA_F-serratus_M_contig969.20999.1|Name=mRNA_F-serratus_M_contig969.20999.1|organism=Fucus serratus male|type=mRNA|length=711bp|location=Sequence derived from alignment at F-serratus_M_contig969:279436..280146- (Fucus serratus male)
CCAAAGAAAACCATGCGAAAGACCATCAGACCTATGCAACTCGTCTACAC
GGACCTCATGGGACTATTCACACCGGCTGCGAAAGGAGGATACCGGTTCG
TCAGCAAGTTCACAGATGACTATTCGCGCATGAAGGAGATCTTCTTGCTC
AAGAACAAGACCGAGGCCGCCGAATCGCTACACCAGTAAAACATGACTGT
GGCCGCCCCGTTAGGACTCCGGATCGAGAATCTTCGATGCGACAAAGGTG
GCGAATATACTGGACAGGGGTTCAGGACCCTGTGCGTCGGAGCGGGGATC
AACATCGAGTATACCGCGACCAACACGCCACAGCAAAACGGAGTATCCGA
GAGAGATGGACATACACTGGCCAAGATCACCCGATGCCTTGTAAAGGGCG
GAGAATTTCCCCCGTTCATGTGGGGAGAGCTGATGTTCACGGCCACATAC
TTAGCCAACAGGTCCCCCCATTCCACTCTGGAAGAGGCCACCCCATACTC
CCAAATACACAGTTTGGAGCCGGACCTCACGGGCTTGCGCGCCATCGGAA
CCAGAGCATTCGTCCACCGTGATACTTACACCAAGAAGCTGGAAGAAAGG
GCCTTCGAGGGAAAACTGTGCCGATACAGCCACAACAGCAAGGCGTACCG
CATCCACATTCCGGCCAAAGGTACGGTCGTGGAGAGCCGGAACGCCACCT
TCCTGGAAACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig969:279436..280146-

>mRNA_F-serratus_M_contig969.20999.1 ID=mRNA_F-serratus_M_contig969.20999.1|Name=mRNA_F-serratus_M_contig969.20999.1|organism=Fucus serratus male|type=CDS|length=1038bp|location=Sequence derived from alignment at F-serratus_M_contig969:279436..280146- (Fucus serratus male)
ATGACTGTGGCCGCCCCGTTAGGACTCCGGATCGAGAATCTTCGATGCGA
CAAAGGTGGCGAATATACTGGACAGGGGTTCAGGACCCTGTGCGTCGGAG
CGGGGATCAACATCGAGTATACCGCGACCAACACGCCACAGCAAAACGGA
GTATCCGAGAGAGATGGACATACACTGGCCAAGATCACCCGATGCCTTGT
AAAGGGCGGAGAATTTCCCCCGTTCATGTGGGGAGAGCTGATGTTCACGG
CCACATACTTAGCCAACAGGTCCCCCCATTCCACTCTGGAAGAGGCCACC
CCATACTCCCAAATACACAGTTTGGAGCCGGACCTCACGGGCTTGCGCGC
CATCGGAACCAGAGCATTCGTCCACCGTGATACTTACACCAAGAAGCTGG
AAGAAAGGGCCTTCGAGGGAAAACTGTGCCGATACAGCCACAACAGCAAG
GCGTACCGCATCCACATTCCGGCCAAAGGTACGGTCGTGGAGAGCCGGAA
CGCCACCTTCCTGGAAACGATGACTGTGGCCGCCCCGTTAGGACTCCGGA
TCGAGAATCTTCGATGCGACAAAGGTGGCGAATATACTGGACAGGGGTTC
AGGACCCTGTGCGTCGGAGCGGGGATCAACATCGAGTATACCGCGACCAA
CACGCCACAGCAAAACGGAGTATCCGAGAGAGATGGACATACACTGGCCA
AGATCACCCGATGCCTTGTAAAGGGCGGAGAATTTCCCCCGTTCATGTGG
GGAGAGCTGATGTTCACGGCCACATACTTAGCCAACAGGTCCCCCCATTC
CACTCTGGAAGAGGCCACCCCATACTCCCAAATACACAGTTTGGAGCCGG
ACCTCACGGGCTTGCGCGCCATCGGAACCAGAGCATTCGTCCACCGTGAT
ACTTACACCAAGAAGCTGGAAGAAAGGGCCTTCGAGGGAAAACTGTGCCG
ATACAGCCACAACAGCAAGGCGTACCGCATCCACATTCCGGCCAAAGGTA
CGGTCGTGGAGAGCCGGAACGCCACCTTCCTGGAAACG
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