mRNA_F-serratus_M_contig966.20985.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig966.20985.1
Unique NamemRNA_F-serratus_M_contig966.20985.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig966.20985.1 vs. uniprot
Match: A0A6H5KT07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT07_9PHAE)

HSP 1 Score: 154 bits (389), Expect = 7.110e-40
Identity = 103/214 (48.13%), Postives = 122/214 (57.01%), Query Frame = 3 
Query:    3 LEPLEPGGMRINVGLLPDRLMAAEIVGSLGGRSGGVGAGVGGLSG--------EPFMGSACRYVSFVDGSSDSGPASV-GHGFSALNAGLQAPSGPLIATVEVCPDVPSLDAFPDPV-----------AVETTSPALESGVAIAMSGELAAMFNEATR---GIRKLIAAKSPSVAGPGYTRGKWLWEWEIESCGNLVGVGVCGRDVAAMSAAGV 575
            LEPL+PGGMR+NVGLLPDRL+AAE     G   GG        S         +P MGS+CR V  V         S  G GFSALNAGL + SGPLIATVEV P+ PS   FPDP            A E  +   +   A   +G  +   ++A     G R+L+ A++PSVAG GY  GKWLWEW + SCGN V VGVC RDVAA+SAAGV
Sbjct: 6386 LEPLQPGGMRLNVGLLPDRLLAAE-----GNNPGGXXXXXXXRSSXXXXXXXTDPGMGSSCRSVWVVGXXXXXXXXSAAGRGFSALNAGLPSQSGPLIATVEVHPEPPSAADFPDPASWDEATAMTASATEERAAGTDGTAAATATGSSSGGVSDAGSAGPGSRRLVVAEAPSVAGEGYQTGKWLWEWHVMSCGNRVSVGVCRRDVAAISAAGV 6594
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BLAST of mRNA_F-serratus_M_contig966.20985.1 vs. uniprot
Match: D8LCZ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCZ5_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 3.330e-39
Identity = 107/215 (49.77%), Postives = 119/215 (55.35%), Query Frame = 3 
Query:    3 LEPLEPGGMRINVGLLPDRLMAAEIVGSLGGRSGGVGAGVGGLSGEPF--------MGSACRYVSFVDGSSDSGPASV-GHGFSALNAGLQAPSGPLIATVEVCPDVPSLDAFPDPV----AVETTSPALESGVAIAMSGELAAMFN-----------EATRGIRKLIAAKSPSVAGPGYTRGKWLWEWEIESCGNLVGVGVCGRDVAAMSAAGV 575
            LEPL+PGGMR+NVGLLPDRL+AAE     G   GG                     MGS+CR V  V G    G  S  G GFSALNAGL + SGPLIATVEV P+ PS   FPDP     A   T+ A E   A    G  AA               A  G R+L+ A++PSVAG GY  GKWLWEW I SCGN   VGVC RDVAA+SAAGV
Sbjct: 5869 LEPLQPGGMRLNVGLLPDRLLAAE-----GNNPGGXXXXXXXXXXXXXXXXGTDLAMGSSCRSVWVVGGXXXXGGLSAAGRGFSALNAGLPSQSGPLIATVEVHPEPPSAADFPDPASWDAATAMTASATEERAA-GTDGTAAATATGSSSGGVSGAGSAEPGSRRLVVAEAPSVAGEGYQTGKWLWEWHIVSCGNRASVGVCRRDVAAISAAGV 6077
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig966.20985.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KT07_9PHAE7.110e-4048.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCZ5_ECTSI3.330e-3949.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig966contigF-serratus_M_contig966:120690..121730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue7.4e-31
Seed eggNOG ortholog2880.D8LCZ5
KEGG koko:K10614
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG5184@1,KOG1426@2759
EC2.3.2.26
COG Functional cat.DZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Exons2
Model size578
Cds size552
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig966.20985.1prot_F-serratus_M_contig966.20985.1Fucus serratus malepolypeptideF-serratus_M_contig966 120690..121704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932741.876341-CDS-F-serratus_M_contig966:120689..1211041622932741.876341-CDS-F-serratus_M_contig966:120689..121104Fucus serratus maleCDSF-serratus_M_contig966 120690..121104 -
1690964451.2278035-CDS-F-serratus_M_contig966:120689..1211041690964451.2278035-CDS-F-serratus_M_contig966:120689..121104Fucus serratus maleCDSF-serratus_M_contig966 120690..121104 -
1622932741.8922355-CDS-F-serratus_M_contig966:121567..1217041622932741.8922355-CDS-F-serratus_M_contig966:121567..121704Fucus serratus maleCDSF-serratus_M_contig966 121568..121704 -
1690964451.2438233-CDS-F-serratus_M_contig966:121567..1217041690964451.2438233-CDS-F-serratus_M_contig966:121567..121704Fucus serratus maleCDSF-serratus_M_contig966 121568..121704 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932741.9098816-UTR-F-serratus_M_contig966:121704..1217301622932741.9098816-UTR-F-serratus_M_contig966:121704..121730Fucus serratus maleUTRF-serratus_M_contig966 121705..121730 -
1690964451.2547445-UTR-F-serratus_M_contig966:121704..1217301690964451.2547445-UTR-F-serratus_M_contig966:121704..121730Fucus serratus maleUTRF-serratus_M_contig966 121705..121730 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig966.20985.1

>prot_F-serratus_M_contig966.20985.1 ID=prot_F-serratus_M_contig966.20985.1|Name=mRNA_F-serratus_M_contig966.20985.1|organism=Fucus serratus male|type=polypeptide|length=184bp
MRINVGLLPDRLMAAEIVGSLGGRSGGVGAGVGGLSGEPFMGSACRYVSF
VDGSSDSGPASVGHGFSALNAGLQAPSGPLIATVEVCPDVPSLDAFPDPV
AVETTSPALESGVAIAMSGELAAMFNEATRGIRKLIAAKSPSVAGPGYTR
GKWLWEWEIESCGNLVGVGVCGRDVAAMSAAGVA
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mRNA from alignment at F-serratus_M_contig966:120690..121730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig966.20985.1 ID=mRNA_F-serratus_M_contig966.20985.1|Name=mRNA_F-serratus_M_contig966.20985.1|organism=Fucus serratus male|type=mRNA|length=1041bp|location=Sequence derived from alignment at F-serratus_M_contig966:120690..121730- (Fucus serratus male)
CGCTGGAGCCCCTCGAACCCGGTGGTATGCGCATCAACGTTGGCCTGCTC
CCCGACCGTCTCATGGCGGCCGAGATCGTCGGTTCCCTAGGAGGGAGATC
AGGAGGGGTGGGGGCAGGAGTCGGTGGCCTCAGCGGAGAGCCTTTTATGG
GATCCGCGTGCAGGTGGGTCATAAAGTGTTGGGCTGGCGGGTACCTAGTG
CGCATAGCTTGCTGCACACATAGGTGAGATTAGGGAGCTATGGGATTCAA
CTCTACGTTTCTGCCATTTTTAAGCTAAAAATGGTCATTTGTCTCGAGTG
GCATGATGGTATATCCTAATGTTGCAACCTACCGGTTCTTAAATCACTTA
CCGCGACCCGCAGTAAAAGCTTCAGGCAGCGCTTCTGATCCAAGTGTTAT
ACTAAAGCCAATGGTGGAGCCAGTGACCCCGGTAATCGGCTAAGGTTATG
GTTCACGGGTGACGCTAAGAGTACTCGTTCCCGCTTCGCCGCGCGTCTTG
TTAAGCACAAAAAGTATCAGTTTAGTTTTTGCCTTACTCATCTGGCGTTC
GACTTCGCTCGTGGTCCTCAGCCAGTCAACCTCCTACCTCGATCTGCGCA
TGCACCGGACCCCACCAACCTCGCAGGTATGTCTCATTCGTCGATGGTAG
CAGCGACAGCGGTCCGGCCAGCGTTGGCCACGGATTCTCCGCACTCAATG
CAGGGCTTCAGGCGCCATCCGGGCCCCTGATTGCGACGGTCGAAGTCTGC
CCTGACGTCCCCTCGCTAGACGCCTTCCCGGACCCTGTCGCCGTGGAAAC
GACAAGTCCGGCGTTAGAATCGGGAGTGGCCATCGCTATGAGTGGCGAGT
TAGCGGCGATGTTCAACGAAGCAACCCGCGGTATCCGAAAGCTGATTGCC
GCGAAGTCACCATCGGTGGCCGGACCAGGTTACACTCGAGGCAAATGGCT
GTGGGAATGGGAGATCGAGTCGTGCGGAAACCTGGTAGGTGTCGGTGTAT
GCGGTCGTGATGTGGCTGCCATGAGCGCTGCCGGTGTTGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig966:120690..121730-

>mRNA_F-serratus_M_contig966.20985.1 ID=mRNA_F-serratus_M_contig966.20985.1|Name=mRNA_F-serratus_M_contig966.20985.1|organism=Fucus serratus male|type=CDS|length=1104bp|location=Sequence derived from alignment at F-serratus_M_contig966:120690..121730- (Fucus serratus male)
ATGCGCATCAACGTTGGCCTGCTCCCCGACCGTCTCATGGCGGCCGAGAT
CGTCGGTTCCCTAGGAGGGAGATCAGGAGGGGTGGGGGCAGGAGTCGGTG
GCCTCAGCGGAGAGCCTTTTATGGGATCCGCGTGCAGATGCGCATCAACG
TTGGCCTGCTCCCCGACCGTCTCATGGCGGCCGAGATCGTCGGTTCCCTA
GGAGGGAGATCAGGAGGGGTGGGGGCAGGAGTCGGTGGCCTCAGCGGAGA
GCCTTTTATGGGATCCGCGTGCAGGTATGTCTCATTCGTCGATGGTAGCA
GCGACAGCGGTCCGGCCAGCGTTGGCCACGGATTCTCCGCACTCAATGCA
GGGCTTCAGGCGCCATCCGGGCCCCTGATTGCGACGGTCGAAGTCTGCCC
TGACGTCCCCTCGCTAGACGCCTTCCCGGACCCTGTCGCCGTGGAAACGA
CAAGTCCGGCGTTAGAATCGGGAGTGGCCATCGCTATGAGTGGCGAGTTA
GCGGCGATGTTCAACGAAGCAACCCGCGGTATCCGAAAGCTGATTGCCGC
GAAGTCACCATCGGTGGCCGGACCAGGTTACACTCGAGGCAAATGGCTGT
GGGAATGGGAGATCGAGTCGTGCGGAAACCTGGTAGGTGTCGGTGTATGC
GGTCGTGATGTGGCTGCCATGAGCGCTGCCGGTGTTGCCGTATGTCTCAT
TCGTCGATGGTAGCAGCGACAGCGGTCCGGCCAGCGTTGGCCACGGATTC
TCCGCACTCAATGCAGGGCTTCAGGCGCCATCCGGGCCCCTGATTGCGAC
GGTCGAAGTCTGCCCTGACGTCCCCTCGCTAGACGCCTTCCCGGACCCTG
TCGCCGTGGAAACGACAAGTCCGGCGTTAGAATCGGGAGTGGCCATCGCT
ATGAGTGGCGAGTTAGCGGCGATGTTCAACGAAGCAACCCGCGGTATCCG
AAAGCTGATTGCCGCGAAGTCACCATCGGTGGCCGGACCAGGTTACACTC
GAGGCAAATGGCTGTGGGAATGGGAGATCGAGTCGTGCGGAAACCTGGTA
GGTGTCGGTGTATGCGGTCGTGATGTGGCTGCCATGAGCGCTGCCGGTGT
TGCC
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