mRNA_F-serratus_M_contig962.20953.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig962.20953.1
Unique NamemRNA_F-serratus_M_contig962.20953.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig962.20953.1 vs. uniprot
Match: A0A6H5L5H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H4_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 2.400e-20
Identity = 57/114 (50.00%), Postives = 67/114 (58.77%), Query Frame = 1 
Query:   61 TTRPSSRIALSELQVDPDLPLPLPKFPGYGKLFG-----EGRQSEQQTPPRLADCTGGMMRRGSSGGGLDR--------RGYLVVPGAVTPRQRQSHSLPQELRAIPTVPRPER 363
            T RPS R AL E+QVDPD PLPLP FPG+GKL G        + +QQ  P   +  G +   GS GG  +          GY V PG V PRQRQSH LP+ELRAI T+P PE+
Sbjct:   91 TRRPSDRRALVEMQVDPDRPLPLPTFPGHGKLLGGEAKHHSNKHQQQQAPSGNNLPGDLKHPGSGGGXXEADQPGGGHYHGYFV-PGVVAPRQRQSHGLPRELRAISTIPTPEK 203
[Close]
BLAST of mRNA_F-serratus_M_contig962.20953.1 vs. uniprot
Match: D8LDL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDL5_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 3.450e-20
Identity = 86/224 (38.39%), Postives = 103/224 (45.98%), Query Frame = 1 
Query:   61 TTRPSSRIALSELQVDPDLPLPLPKFPGYGKLFG-EGRQSEQQTPPRLA----DCTGGMMRRGSSGGGLDR--------RGYLVVPGAVTPRQRQSHSLPQELRAIPTVPRPERFPGSTGRGRARPKAGTGIDRGSRTTSSRPAIR------------------------------ASSLPAPGSAAXXXXXXXXXRQTRLAVEELRKEMRQREQRLELELERL 603
            T RPS R AL E+QVDPD PLPLP FPG+GKL G E +          A       G +   GS GGG +          GY V PG V P+QRQSH LP+ELRAI T+P PE+ P S  R  A               +  P+ R                              ++S P PGS+A         R TR AV+ LRKEM +RE RLE  L+RL
Sbjct:  305 TRRPSDRRALVEMQVDPDRPLPLPTFPGHGKLLGGEAKHXXXXXXXXQAPSGNSLPGDLKHPGSGGGGGEADQPGEGHYHGYFV-PGVVAPKQRQSHGLPRELRAISTIPTPEKRPAS--RATASXXXXXXXXXXXXXLAQPPSARRAAAVPVAPPLPRQPAEXXXXXXXXXXXXXSASRPDPGSSAALASARDQRRSTRRAVDALRKEMLEREARLEXXLDRL 525
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig962.20953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L5H4_9PHAE2.400e-2050.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDL5_ECTSI3.450e-2038.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig962contigF-serratus_M_contig962:59124..59827 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size706
Cds size702
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932735.293646-CDS-F-serratus_M_contig962:59123..598251622932735.293646-CDS-F-serratus_M_contig962:59123..59825Fucus serratus maleCDSF-serratus_M_contig962 59124..59825 +
1690964447.7047017-CDS-F-serratus_M_contig962:59123..598251690964447.7047017-CDS-F-serratus_M_contig962:59123..59825Fucus serratus maleCDSF-serratus_M_contig962 59124..59825 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig962.20953.1prot_F-serratus_M_contig962.20953.1Fucus serratus malepolypeptideF-serratus_M_contig962 59124..59825 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig962.20953.1

>prot_F-serratus_M_contig962.20953.1 ID=prot_F-serratus_M_contig962.20953.1|Name=mRNA_F-serratus_M_contig962.20953.1|organism=Fucus serratus male|type=polypeptide|length=234bp
SRRPRRITGKIDGAATAAVRTTRPSSRIALSELQVDPDLPLPLPKFPGYG
KLFGEGRQSEQQTPPRLADCTGGMMRRGSSGGGLDRRGYLVVPGAVTPRQ
RQSHSLPQELRAIPTVPRPERFPGSTGRGRARPKAGTGIDRGSRTTSSRP
AIRASSLPAPGSAAAAAAAREQRRQTRLAVEELRKEMRQREQRLELELER
LKRARLRRAANSGDRGGGNRFESCAPSERAAAFP
back to top

mRNA from alignment at F-serratus_M_contig962:59124..59827+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig962.20953.1 ID=mRNA_F-serratus_M_contig962.20953.1|Name=mRNA_F-serratus_M_contig962.20953.1|organism=Fucus serratus male|type=mRNA|length=704bp|location=Sequence derived from alignment at F-serratus_M_contig962:59124..59827+ (Fucus serratus male)
TCGAGGCGGCCGAGGAGGATCACGGGAAAGATTGACGGAGCAGCAACGGC
GGCGGTTCGAACCACCAGACCCAGCTCCCGGATAGCTCTGTCCGAGCTCC
AGGTCGATCCCGATCTTCCGTTACCGTTGCCCAAGTTTCCTGGATACGGC
AAGTTGTTTGGGGAAGGACGTCAGAGCGAACAACAAACGCCTCCCCGCCT
CGCCGATTGTACCGGGGGCATGATGAGGCGCGGTAGCAGCGGCGGGGGGC
TAGACCGACGCGGATACCTTGTTGTCCCAGGAGCCGTGACCCCGAGACAG
CGGCAAAGCCACAGCCTTCCGCAGGAGCTGCGCGCGATACCAACGGTACC
GAGACCGGAGCGGTTCCCGGGGTCGACAGGGCGCGGGCGAGCTCGTCCTA
AGGCAGGCACGGGAATCGATCGAGGGTCGCGAACCACCTCGTCTCGACCC
GCGATCCGTGCGTCCTCGCTTCCCGCGCCTGGATCTGCCGCCGCCGCCGC
CGCCGCCAGAGAGCAACGCAGGCAGACTAGGCTGGCGGTTGAGGAGCTGA
GGAAGGAGATGCGGCAGCGCGAGCAACGTCTCGAGCTGGAGCTGGAGAGG
CTGAAAAGGGCTCGGTTGAGACGCGCTGCCAACAGCGGGGACAGAGGTGG
AGGTAACCGCTTTGAAAGTTGTGCCCCATCGGAGAGGGCCGCAGCCTTTC
CGCG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig962:59124..59827+

>mRNA_F-serratus_M_contig962.20953.1 ID=mRNA_F-serratus_M_contig962.20953.1|Name=mRNA_F-serratus_M_contig962.20953.1|organism=Fucus serratus male|type=CDS|length=1404bp|location=Sequence derived from alignment at F-serratus_M_contig962:59124..59827+ (Fucus serratus male)
TCGAGGCGGCCGAGGAGGATCACGGGAAAGATTGACGGAGCAGCAACGGC
GGCGGTTCGAACCACCAGACCCAGCTCCCGGATAGCTCTGTCCGAGCTCC
AGGTCGATCCCGATCTTCCGTTACCGTTGCCCAAGTTTCCTGGATACGGC
AAGTTGTTTGGGGAAGGACGTCAGAGCGAACAACAAACGCCTCCCCGCCT
CGCCGATTGTACCGGGGGCATGATGAGGCGCGGTAGCAGCGGCGGGGGGC
TAGACCGACGCGGATACCTTGTTGTCCCAGGAGCCGTGACCCCGAGACAG
CGGCAAAGCCACAGCCTTCCGCAGGAGCTGCGCGCGATACCAACGGTACC
GAGACCGGAGCGGTTCCCGGGGTCGACAGGGCGCGGGCGAGCTCGTCCTA
AGGCAGGCACGGGAATCGATCGAGGGTCGCGAACCACCTCGTCTCGACCC
GCGATCCGTGCGTCCTCGCTTCCCGCGCCTGGATCTGCCGCCGCCGCCGC
CGCCGCCAGAGAGCAACGCAGGCAGACTAGGCTGGCGGTTGAGGAGCTGA
GGAAGGAGATGCGGCAGCGCGAGCAACGTCTCGAGCTGGAGCTGGAGAGG
CTGAAAAGGGCTCGGTTGAGACGCGCTGCCAACAGCGGGGACAGAGGTGG
AGGTAACCGCTTTGAAAGTTGTGCCCCATCGGAGAGGGCCGCAGCCTTTC
CGTCGAGGCGGCCGAGGAGGATCACGGGAAAGATTGACGGAGCAGCAACG
GCGGCGGTTCGAACCACCAGACCCAGCTCCCGGATAGCTCTGTCCGAGCT
CCAGGTCGATCCCGATCTTCCGTTACCGTTGCCCAAGTTTCCTGGATACG
GCAAGTTGTTTGGGGAAGGACGTCAGAGCGAACAACAAACGCCTCCCCGC
CTCGCCGATTGTACCGGGGGCATGATGAGGCGCGGTAGCAGCGGCGGGGG
GCTAGACCGACGCGGATACCTTGTTGTCCCAGGAGCCGTGACCCCGAGAC
AGCGGCAAAGCCACAGCCTTCCGCAGGAGCTGCGCGCGATACCAACGGTA
CCGAGACCGGAGCGGTTCCCGGGGTCGACAGGGCGCGGGCGAGCTCGTCC
TAAGGCAGGCACGGGAATCGATCGAGGGTCGCGAACCACCTCGTCTCGAC
CCGCGATCCGTGCGTCCTCGCTTCCCGCGCCTGGATCTGCCGCCGCCGCC
GCCGCCGCCAGAGAGCAACGCAGGCAGACTAGGCTGGCGGTTGAGGAGCT
GAGGAAGGAGATGCGGCAGCGCGAGCAACGTCTCGAGCTGGAGCTGGAGA
GGCTGAAAAGGGCTCGGTTGAGACGCGCTGCCAACAGCGGGGACAGAGGT
GGAGGTAACCGCTTTGAAAGTTGTGCCCCATCGGAGAGGGCCGCAGCCTT
TCCG
back to top