mRNA_F-serratus_M_contig961.20950.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig961.20950.1
Unique NamemRNA_F-serratus_M_contig961.20950.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig961.20950.1 vs. uniprot
Match: D7FLT1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLT1_ECTSI)

HSP 1 Score: 257 bits (657), Expect = 5.500e-82
Identity = 129/181 (71.27%), Postives = 152/181 (83.98%), Query Frame = 1
Query:    1 VTVPTVGRFQAEGNAYLTTERIVFCAKGPHRKQKQNGMLFKGFDIPLDMLSGEKFDQPILFGANNLSGIVQTNVAYAGNRSGEVAHGA-AMATPVINSNWRLSFRNGGFGTFVRTFYTALHRRRQADPAVTAVSFQGSDAEWAAMQATEVIQAVPIDPTDGTVLLTATPVQASAPMMPEGE 540
            +TVPTVGRF+  G+A+LTT+R+VFCA+ PH  Q  NGMLFKGFDIPL +LSGEKF+QPILFGANNLSG+V+TNVAYAG+ +G  A G  A ATPVINS+WRLSFRNGGFGTF+  FY+AL RRR  DP+VTAV+F GS+ EWA++QATEV QAV +DPTDGTVLLTA PV ASAP  P G+
Sbjct:   47 LTVPTVGRFRTTGDAFLTTDRVVFCARKPHGSQ--NGMLFKGFDIPLQVLSGEKFEQPILFGANNLSGVVETNVAYAGSTTGATAPGFHATATPVINSSWRLSFRNGGFGTFLHAFYSALQRRRSVDPSVTAVTFAGSEDEWASLQATEVAQAVALDPTDGTVLLTAAPVAASAPPRPYGD 225          
BLAST of mRNA_F-serratus_M_contig961.20950.1 vs. uniprot
Match: A0A067BUS7_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BUS7_SAPPC)

HSP 1 Score: 85.1 bits (209), Expect = 4.160e-16
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 1
Query:   22 RFQAEGNAYLTTERIVFCAKGPHRKQKQNGMLFKGFDIPLDMLSGEKFDQPILFGANNLSGIVQTNVAYAGNRSGEVAHGAAMATPVINSNWRLSFRNGGFGTFVRTFYTALHRRRQADPAVTAVSFQGSDAEWAAMQATEVIQAVPIDPTDGTVLLTATPVQ 510
            +F+A G  Y+TT+R+VFCA    +   Q+G  F+ F+IPLD ++ +KF+QP +FG+ N+SG    +V   G   G+VA      TP+    WR+SF NGG GTF+  F   +  ++ A     A + +   A               +DP D TV+  + PV+
Sbjct:   41 KFKATGRIYITTQRLVFCAD---KAATQHGRFFQAFEIPLDNIADDKFNQP-MFGSCNISG----DVFPVGTDEGDVA------TPI---EWRVSFPNGGTGTFLPIFLRLMEHKKHAGLVDEAFAEKQRKAY--------------VDPNDPTVIYVSQPVR 172          
BLAST of mRNA_F-serratus_M_contig961.20950.1 vs. uniprot
Match: A0A6G0XH32_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XH32_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 2.190e-15
Identity = 55/168 (32.74%), Postives = 88/168 (52.38%), Query Frame = 1
Query:   22 RFQAEGNAYLTTERIVFCA-KGPHRKQKQNGMLFKGFDIPLDMLSGEKFDQPILFGANNLSG-IVQTNVAYAGNRSGEVAHGAAMATPVINSNWRLSFRNGGFGTFVRTFYTALHRRRQADPAVTAVSFQGSDAEWAAMQATEVIQAVPIDPTDGTVLLTATPVQASA 519
            +F+  G  Y+TT+R+VFCA KG H    Q+ + F+ F+IPLD ++ +KF+QPI FGA N+SG +V  N A  G            A+P+    W+++F NGG GTF+  F   + ++++A            D  +   Q  +      +DP D +++    PV+  A
Sbjct:   41 KFKGNGRIYITTQRLVFCADKGSH----QHDIFFEAFEIPLDNITADKFNQPI-FGACNISGNVVPVNQAADGG-----------ASPI---QWKVAFNNGGTGTFLAVFLKLIEQKKKAGEV---------DETFVQKQQQKAF----VDPNDPSIIYVTQPVRPRA 176          
BLAST of mRNA_F-serratus_M_contig961.20950.1 vs. uniprot
Match: A0A067C3R3_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067C3R3_SAPPC)

HSP 1 Score: 83.6 bits (205), Expect = 1.340e-14
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = 1
Query:   22 RFQAEGNAYLTTERIVFCAKGPHRKQKQNGMLFKGFDIPLDMLSGEKFDQPILFGANNLSGIVQTNVAYAGNRSGEVAHGAAMATPVINSNWRLSFRNGGFGTFVRTFYTALHRRRQADPAVTAVSFQGSDAEWAAMQATEVIQAVPIDPTDGTVLLTATP 504
            +F+A G  Y+TT+R+VFCA    +   Q+G  F+ F+IPLD ++ +KF+QP +FG+ N+SG    +V   G   G+VA      TP+    WR+SF NGG GTF+  F   +  ++ A     A + +   A               +DP D TV+  + P
Sbjct:   41 KFKASGRIYITTQRLVFCAD---KAATQHGRFFQAFEIPLDNIADDKFNQP-MFGSCNISG----DVFPVGTDEGDVA------TPI---EWRVSFPNGGTGTFLPIFLRLMEHKKHAGLVDEAFAEKQRKAY--------------VDPNDPTVIYVSQP 170          
BLAST of mRNA_F-serratus_M_contig961.20950.1 vs. uniprot
Match: W4GK22_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GK22_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.580e-14
Identity = 57/174 (32.76%), Postives = 87/174 (50.00%), Query Frame = 1
Query:    4 TVPTVGRFQAEGNAYLTTERIVFCAKGPHRKQKQNGMLFKGFDIPLDMLSGEKFDQPILFGANNLSGIV-----QTNVAYAGNRSGEVAHGAAMATPVINSNWRLSFRNGGFGTFVRTFYTALHRRRQADPAVTAVSFQGSDAEWAAMQATEVIQAVPIDPTDGTVLLTATPVQ 510
            T  +  +F+A G  Y+TT+R+VFCA    +   Q+   F+ F+IPLD +  +KF+QPI FGA N+SG V     QTN                  TP+   +W++SF NGG GTF+  F   + ++++ D           DA + A Q  +      +DP D +V+    PV+
Sbjct:   36 TTASGSKFKANGRIYITTQRLVFCAD---KGTTQHDTFFEAFEIPLDNVRRDKFNQPI-FGACNISGDVFPATDQTNYDDV--------------TPI---HWKVSFNNGGTGTFLTVFLKLMEQKKKGD----------IDASFVAKQQQKAF----VDPNDPSVIYVTQPVR 174          
BLAST of mRNA_F-serratus_M_contig961.20950.1 vs. uniprot
Match: A0A485KAD1_9STRA (Aste57867_3395 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KAD1_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.050e-14
Identity = 55/166 (33.13%), Postives = 87/166 (52.41%), Query Frame = 1
Query:   22 RFQAEGNAYLTTERIVFCAKGPHRKQKQNGMLFKGFDIPLDMLSGEKFDQPILFGANNLSGIVQTNVAYAGNRSGEVAHGAAMATPVINSNWRLSFRNGGFGTFVRTFYTALHRRRQADPAVTAVSFQGSDAEWAAMQATEVIQAVPIDPTDGTVLLTATPVQASA 519
            +F+A G  Y+T++R+VFCA    +   QN M F+ F+IPLD +S +KF+QPI FGA N+SG V        +++ +V       TP+    W++SF NGG GTF+  F   + ++++             D E+   Q     Q   +DP D +++    PV+  A
Sbjct:   27 KFKANGRMYITSQRLVFCAD---KGSTQNDMFFEAFEIPLDNVSRDKFNQPI-FGACNISGDVLPV-----HQTDDVD-----VTPI---RWKVSFNNGGTGTFLAVFLKLMEQKKKEAEV---------DEEFIRKQ-----QKAFVDPNDPSIIYVTQPVRPRA 161          
BLAST of mRNA_F-serratus_M_contig961.20950.1 vs. uniprot
Match: A0A1V9YZ54_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZ54_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 7.180e-13
Identity = 51/161 (31.68%), Postives = 79/161 (49.07%), Query Frame = 1
Query:   22 RFQAEGNAYLTTERIVFCAKGPHRKQKQNGMLFKGFDIPLDMLSGEKFDQPILFGANNLSGIVQTNVAYAGNRSGEVAHGAAMATPVINSNWRLSFRNGGFGTFVRTFYTALHRRRQADPAVTAVSFQGSDAEWAAMQATEVIQAVPIDPTDGTVLLTATP 504
            +F+  G  Y+TT+R+VFCA    +   Q+G  F+ ++IPLD ++  KF+QPI FG+ N++G V             +  G A  T    + W+LSF NGG GTF+  F   +   ++A            D  +A  Q     +   +DP D TV+  + P
Sbjct:   41 KFKGNGRIYITTQRLVFCAD---KGSDQHGRNFQAYEIPLDNITENKFNQPI-FGSCNITGDV-------------IPVGTAEGTVATPNQWKLSFNNGGTGTFLPVFLRLMEHHKRAGEV---------DETFADKQ-----RKAYVDPNDPTVIYVSQP 170          
BLAST of mRNA_F-serratus_M_contig961.20950.1 vs. uniprot
Match: A0A7S2S2S8_9STRA (Hypothetical protein n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2S2S8_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 8.500e-11
Identity = 55/166 (33.13%), Postives = 86/166 (51.81%), Query Frame = 1
Query:   31 AEGNAYLTTERIVFCAKGPHRKQKQNGMLFKGFDIPLDMLSGEKFDQPILFGANNLSGIVQTNVAYAGNRSGEVAHGAAMATPVINSNWRLSFRNGGFGTFVRTFYTAL-HRRRQADPAVTAVSFQGSDAEWAAMQATEVIQAVPIDPTDGTVLLTATPVQASAPM 525
            + G  +LTT+R+VF A+ P  KQ+ +G +F+ F+IPL+ ++ EKF+QPI FG+NNL+G V+               G  + T   ++ ++L F  GG GTF+  F+ AL   RR A  ++  V  Q   A  A           P DP+  T+ L    +  + P+
Sbjct:   43 SNGTVFLTTKRLVFVAE-PAVKQR-DGFMFQAFEIPLEKIADEKFNQPI-FGSNNLAGTVKP------------VPGMGLNT---DAKYKLYFNAGGAGTFLPLFFRALIEARRPAQHSLAQVILQNQFAAVAVQD--------PSDPS--TIFLQQPDIPVATPV 180          
BLAST of mRNA_F-serratus_M_contig961.20950.1 vs. uniprot
Match: A0A8K1CLP4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLP4_PYTOL)

HSP 1 Score: 69.3 bits (168), Expect = 1.890e-10
Identity = 47/162 (29.01%), Postives = 80/162 (49.38%), Query Frame = 1
Query:   25 FQAEGNAYLTTERIVFCAKGPHRKQKQNGMLFKGFDIPLDMLSGEKFDQPILFGANNLSGIVQTNVAYAGNRSGEVAHGAAMATPVINSNWRLSFRNGGFGTFVRTFYTALHRRRQADPAVTAVSFQGSDAEWAAMQATEVIQAVPIDPTDGTVLLTATPVQ 510
            ++ +G  Y TT+R++F A+   +   Q+G+ F+ F+IPL  +  EKF+QPI FGA ++SG+V  +        GE        T  +  +W++ F NGG G  +  F   L +R++ +  +     Q  +  +             +DP D TV+  A PV+
Sbjct:   42 YKGKGRIYCTTQRVIFVAE---KGSMQHGIFFEAFEIPLQNMMDEKFNQPI-FGACSISGLVTPS-------EGE-------DTDTVKFSWKIIFDNGGTGIVLPVFLRMLEKRKRQE-TLDMNFVQNQNKAF-------------VDPNDPTVIYIAQPVK 171          
BLAST of mRNA_F-serratus_M_contig961.20950.1 vs. uniprot
Match: A0A1R2CDA6_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2CDA6_9CILI)

HSP 1 Score: 62.8 bits (151), Expect = 1.760e-7
Identity = 52/164 (31.71%), Postives = 81/164 (49.39%), Query Frame = 1
Query:   22 RFQAEGNAYLTTERIVFCAKGPHRKQKQNGMLFKGFDIPLDMLSGEKFDQPILFGANNLSGIVQTNVAYAGNRSGEVAHGAAMATPVINSNWRLSFRNGGFGTFVRTFYTALH--RRRQADPAVTAVSFQGSDAEWAAMQATEVIQAVP-IDPTDGTVLLTATP 504
            +++ +G  YLTT R+VF        +K++ +    FDIP+D++S EKF+QPI FGAN +SG V+                        N+ ++  F +GG GTF+  FY  +   RRR+A+ +       G D  +    A+  IQ V  +DP D +V+    P
Sbjct:   39 KYKGKGRLYLTTIRLVFV------NEKRSNI--SSFDIPIDLMSHEKFNQPI-FGANYISGSVKPLYNLI----------------PCNAKFKFWFMSGGTGTFLPMFYGIVDQIRRRRANGS------NGPDPRFVESVASGNIQNVAYVDPNDPSVIFVLQP 171          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig961.20950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
D7FLT1_ECTSI5.500e-8271.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A067BUS7_SAPPC4.160e-1634.36Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A6G0XH32_9STRA2.190e-1532.74Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A067C3R3_SAPPC1.340e-1434.16Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
W4GK22_9STRA1.580e-1432.76Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A485KAD1_9STRA2.050e-1433.13Aste57867_3395 protein n=1 Tax=Aphanomyces stellat... [more]
A0A1V9YZ54_9STRA7.180e-1331.68Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2S2S8_9STRA8.500e-1133.13Hypothetical protein n=1 Tax=labyrinthulid quahog ... [more]
A0A8K1CLP4_PYTOL1.890e-1029.01Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1R2CDA6_9CILI1.760e-731.71Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig961contigF-serratus_M_contig961:334522..337345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score60.5
Seed ortholog evalue7.7e-07
Seed eggNOG ortholog71139.XP_010032796.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.female pronucleus assembly
EggNOG OGs37JVV@33090,3G98D@35493,KOG3294@1,KOG3294@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_001370.1
COG Functional cat.T
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons5
Model size1023
Cds size435
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932734.6406708-UTR-F-serratus_M_contig961:334521..3349981622932734.6406708-UTR-F-serratus_M_contig961:334521..334998Fucus serratus maleUTRF-serratus_M_contig961 334522..334998 -
1690964447.4198062-UTR-F-serratus_M_contig961:334521..3349981690964447.4198062-UTR-F-serratus_M_contig961:334521..334998Fucus serratus maleUTRF-serratus_M_contig961 334522..334998 -
1622932734.7200441-UTR-F-serratus_M_contig961:336448..3364501622932734.7200441-UTR-F-serratus_M_contig961:336448..336450Fucus serratus maleUTRF-serratus_M_contig961 336449..336450 -
1690964447.4797268-UTR-F-serratus_M_contig961:336448..3364501690964447.4797268-UTR-F-serratus_M_contig961:336448..336450Fucus serratus maleUTRF-serratus_M_contig961 336449..336450 -
1622932734.7427828-UTR-F-serratus_M_contig961:337236..3373451622932734.7427828-UTR-F-serratus_M_contig961:337236..337345Fucus serratus maleUTRF-serratus_M_contig961 337237..337345 -
1690964447.490732-UTR-F-serratus_M_contig961:337236..3373451690964447.490732-UTR-F-serratus_M_contig961:337236..337345Fucus serratus maleUTRF-serratus_M_contig961 337237..337345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932734.6561472-CDS-F-serratus_M_contig961:334998..3351091622932734.6561472-CDS-F-serratus_M_contig961:334998..335109Fucus serratus maleCDSF-serratus_M_contig961 334999..335109 -
1690964447.434369-CDS-F-serratus_M_contig961:334998..3351091690964447.434369-CDS-F-serratus_M_contig961:334998..335109Fucus serratus maleCDSF-serratus_M_contig961 334999..335109 -
1622932734.6765306-CDS-F-serratus_M_contig961:335464..3355881622932734.6765306-CDS-F-serratus_M_contig961:335464..335588Fucus serratus maleCDSF-serratus_M_contig961 335465..335588 -
1690964447.4491081-CDS-F-serratus_M_contig961:335464..3355881690964447.4491081-CDS-F-serratus_M_contig961:335464..335588Fucus serratus maleCDSF-serratus_M_contig961 335465..335588 -
1622932734.6891663-CDS-F-serratus_M_contig961:335867..3359401622932734.6891663-CDS-F-serratus_M_contig961:335867..335940Fucus serratus maleCDSF-serratus_M_contig961 335868..335940 -
1690964447.459607-CDS-F-serratus_M_contig961:335867..3359401690964447.459607-CDS-F-serratus_M_contig961:335867..335940Fucus serratus maleCDSF-serratus_M_contig961 335868..335940 -
1622932734.7047234-CDS-F-serratus_M_contig961:336321..3364481622932734.7047234-CDS-F-serratus_M_contig961:336321..336448Fucus serratus maleCDSF-serratus_M_contig961 336322..336448 -
1690964447.470987-CDS-F-serratus_M_contig961:336321..3364481690964447.470987-CDS-F-serratus_M_contig961:336321..336448Fucus serratus maleCDSF-serratus_M_contig961 336322..336448 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig961.20950.1prot_F-serratus_M_contig961.20950.1Fucus serratus malepolypeptideF-serratus_M_contig961 334999..336448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig961.20950.1

>prot_F-serratus_M_contig961.20950.1 ID=prot_F-serratus_M_contig961.20950.1|Name=mRNA_F-serratus_M_contig961.20950.1|organism=Fucus serratus male|type=polypeptide|length=145bp
MLFKGFDIPLDMLSGEKFDQPILFGANNLSGIVQTNVAYAGNRSGEVAHG
AAMATPVINSNWRLSFRNGGFGTFVRTFYTALHRRRQADPAVTAVSFQGS
DAEWAAMQATEVIQAVPIDPTDGTVLLTATPVQASAPMMPEGEF*
back to top

mRNA from alignment at F-serratus_M_contig961:334522..337345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig961.20950.1 ID=mRNA_F-serratus_M_contig961.20950.1|Name=mRNA_F-serratus_M_contig961.20950.1|organism=Fucus serratus male|type=mRNA|length=2824bp|location=Sequence derived from alignment at F-serratus_M_contig961:334522..337345- (Fucus serratus male)
GTGACCGTGCCAACTGTGGGGCGATTCCAAGCAGAAGGTAACGCCTACTT GACAACGGAACGTATCGTCTTTTGCGCCAAGGGACCCCACCGAAAGCAGA AGCAGAATGGTGAGCAAGAGAGAGACACAGGATACAGACATACAGACATA CAGATGGAGGCCTCACGGGTTGTTGGTTCTTTGGATCTACGGATTTCAAC AGATAGATGGCGCCACAGCCACTCGGTCTCACTTGGTCTCACTTTTCCTC GAGGCCTGCCGTCGAGAGCAAGCAAGGTTTCCCACTGTTCTAGAGCGTCA GAGTTGAGGGTGTTTTGCAGTCATAGTATACTGCATGCTGTGACGTGTTG TGACGTGCTGTGACGTGCATGTGTGTGTGCCTATTACTATTACTATTAAT AGTACTATTACTAGTACTCGTGTGCAGGAATGAACCTGAAGGAACCTTTT GCTCTGCTTGTTTTGTTTCATTGAACATTAAAGTACTTGTACGAGTACAG TACTTGGGGTCTCTCCTTGTTTTGTTTTATTGACTCCGTGTATAGAGGAA TCAACGGAATCAACATTTAGCGGCGGTCGGGTCAACCGATTGAACTGTCG TTTTCTATAGCTTGTATCTGAATGGTGTCCATCGAGTGGCCTGTAGTGTG CCTGTAGTGTAGTGTAGTGCAGTGACATCTGTAATGTGATGCTGAAAGAG AGAGCAGAGCTATCGTGGCGGAGAGAGAGACTCTTCGACGACTACGCAAT ACAAGGCAATACAAGGGCAATACAAGGGCAATACAAGGCTTACTCCTCTG TTCTGTTCTGTTTCGAAATTGTCCCTTCTGTTGTGTTCTGCTCTGTTTTG CGACATGTCGTTGGCTGACGCCATGTCATATTGACTGTCCGGAAGGCATG CTTTTCAAGGGCTTCGATATTCCGCTTGACATGCTGAGCGGCGAAAAATT CGACCAACCTATCCTCTTCGGCGCGAACAACCTTTCAGGAATCGTGCAGA CAAACGTCGCTTACGCAGGTAACCGTGATACGATTTATCCTTGATTTGAA GACATTTGAAGACGCGAACGTAATTTCTCGTGCGCTTGGCTGTGGTATCG ATGTAAAAACTGCAAGACTCGTGTGTTGACATTAAGCGCATGCGATGTGG AGCGGGATGGCGAGCGGGATGACCCATAAATTGGGACATATGCTACGTTC CTAGACCGTATATTAAGGGTAAATTGAGGCTCGCGCGGGAATGAAGCGGT TAGGCATCCCGGACCTTTCCGTTGCTCTCCTTGGCTCCGTCCACTAATGG TGTGATGAAGAGCTACTGTATGTGTATTAATAGAGTTAATAGAGTAGATA TAACTCTAACCTTGTGCCTTGTACCCTAAGCCTAACCCTATGCCTTATCG AGCAGGTAGTGGAGAGGTCGCTCATGGCGCCGCTATGGCCACACCCGTGA TCAATTCTAACTGGCGATTATCGTTCAGGTACAGCGTATCGTTTTTTTCT AGGCTAACGGCGTACGCTGTATTGTACTATCGTTCGATTGCTGTACTGAA TCCAGGATGTGGTAAATCACTGAGGCACGTTGCCCGAATTTCCGAATGGT ATGTTTCAAAGTAAATACTGCACTAATCATTAACATTAATACAGAATACG CCACCTCCAAGCCATTATCCTTCGTTGGAAAGGCCACCCTGGCCTTCATG CTCTTACCCAGAAGCGCACGTCTGACTAAACTGCTACGGTATCTTTCTCT TTGCCAGGAATGGCGGCTTCGGAACATTCGTGAGGACCTTCTACACAGCC CTTCATCGGCGGCGACAGGCTGATCCAGCAGTTACCGCTGTGTCGTTTCA AGGATCGGACGCGGAGTGGGCTGCCATGCAGGTGATACAGCTCGCGAGAT GTTTTCCGTGTTCCTAGACTCTATTAATAGTGGGTATGGCACTGTCGGCG CAAGACGCGCCATTGAAGCCCTTGCGACCTTACTATTACTATTAATACAT GTATTACCGATAATCCTACAACGCCGACGCTAAGCCCTTCGATGTCATGG CCCACTCTTTTTCAATAAAAATATTCGACATGCTACCAAACGAAAGAGGA TTGTCACAGAGTAGTACTACACGACTTCCTTCAAATACCAGGTCCCAGAT TCCACTCATACAAAGCTCGCTTTCAGCGCCGTGGACGCTTTTTTTAATCC CTCCATTGCGGTATCTTTGCGATGCCTATCCCGCAGGCAACGGAAGTGAT CCAAGCAGTACCGATCGACCCGACCGATGGCACGGTGCTTCTCACGGCGA CTCCTGTCCAGGCGTCGGCGCCGATGATGCCGGAAGGAGAGTTTTGACGG GCGCCATCGCTCCGATCCCTTTTCCGATCGCCTCCGCGTTACTGTAGCTC TATCGAACGTCGTTACTACGTCAGATACGGCTCCGGCAAGCAGTGTAGTG CTTCAGCTGTGACGCTTGTTCGATGTGTGGCTGGCATATTTGTATGGTGT GTGGTTGATGTATTATGCTCGAGTGGCTACAGTAGCCTGCTGTGACCCGG CCTACGTCAGAGGCCCTTTGTGGACTCCCTCCTGTGTTGTATAGGCCCAA ATAATTACTCTCGAACGCTGCCAGTATGAATATTCTTTGTCCGCGCGAAG CACCGCTCGCGCCAGGGAATGTCTCGCATCGCCCTTCTTACATACCAGGT ACTGGTACGCGTTATAACCTAGCAACCGAATAGTTGTGTACTTCCAACAG ATTTCAAGCAATACATATTTTCATTGAACTTTGCACAGAATCTCATTTGC ACCCATATCAGCTATTAATGGCAC
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig961:334522..337345-

>mRNA_F-serratus_M_contig961.20950.1 ID=mRNA_F-serratus_M_contig961.20950.1|Name=mRNA_F-serratus_M_contig961.20950.1|organism=Fucus serratus male|type=CDS|length=870bp|location=Sequence derived from alignment at F-serratus_M_contig961:334522..337345- (Fucus serratus male)
ATGCTTTTCAAGGGCTTCGATATTCCGCTTGACATGCTGAGCGGCGAAAA
ATTCGACCAACCTATCCTCTTCGGCGCGAACAACCTTTCAGGAATCGTGC
AGACAAACGTCGCTTACGCAGGTAACCATGCTTTTCAAGGGCTTCGATAT
TCCGCTTGACATGCTGAGCGGCGAAAAATTCGACCAACCTATCCTCTTCG
GCGCGAACAACCTTTCAGGAATCGTGCAGACAAACGTCGCTTACGCAGGT
AACCGTAGTGGAGAGGTCGCTCATGGCGCCGCTATGGCCACACCCGTGAT
CAATTCTAACTGGCGATTATCGTTCAGGTAGTGGAGAGGTCGCTCATGGC
GCCGCTATGGCCACACCCGTGATCAATTCTAACTGGCGATTATCGTTCAG
GAATGGCGGCTTCGGAACATTCGTGAGGACCTTCTACACAGCCCTTCATC
GGCGGCGACAGGCTGATCCAGCAGTTACCGCTGTGTCGTTTCAAGGATCG
GACGCGGAGTGGGCTGCCATGCAGGAATGGCGGCTTCGGAACATTCGTGA
GGACCTTCTACACAGCCCTTCATCGGCGGCGACAGGCTGATCCAGCAGTT
ACCGCTGTGTCGTTTCAAGGATCGGACGCGGAGTGGGCTGCCATGCAGGC
AACGGAAGTGATCCAAGCAGTACCGATCGACCCGACCGATGGCACGGTGC
TTCTCACGGCGACTCCTGTCCAGGCGTCGGCGCCGATGATGCCGGAAGGA
GAGTTTTGAGCAACGGAAGTGATCCAAGCAGTACCGATCGACCCGACCGA
TGGCACGGTGCTTCTCACGGCGACTCCTGTCCAGGCGTCGGCGCCGATGA
TGCCGGAAGGAGAGTTTTGA
back to top