mRNA_F-serratus_M_contig96.20920.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig96.20920.1
Unique NamemRNA_F-serratus_M_contig96.20920.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig96.20920.1 vs. uniprot
Match: D8LC61_ECTSI (Putative copper transporter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC61_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 5.120e-63
Identity = 356/859 (41.44%), Postives = 417/859 (48.54%), Query Frame = 1 
Query:    1 CQYESCTKPARSSGRPFCRRHGEGRRCKAHGCNKVDVGGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGAGVXXXXXXXXXXXXXXXXQKLVRKSNRCTKHASQVSEIATPSAVEAPIVPTAAPS------------STVDHTGEERLPSPEPQPPLSPEKPAEEPVVPQSQASGIMSGNPVSERGALERDRAPALALPLADIGRRTGSCSPPL--------PSIASMNIVGPLPAPRATEALEDFRNMEKPVVSFKAIPPLSTSLGLTSSIADRPTPLLPVPSLHHLDHRVKGAVSGPLLQ--KSIRS---------PKGPSTIAAGVTSSPEMARGFQQ---------PLPRFDAIESSPNQDRVAFRLERVRSLTGSLAGAVEDPPQPPHVSTAYRFFSPGGKALAGS----------LPEERASNRCDSVAAL-GLCRLAQSDRYRDDHQS----ERSYSVVVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--GSDVAQGWSQHYLHEVPGAQDRNGQLENPSGACI-RTGAAPGDFPPTPPPLDIAGAERRAIAPSPDSTSCGNAS-PFVVKALLETSPGDDPAAIQATVEGILPPDVRSQPYCSQYPSSGVGGVTQEGFSSGSVTDAGSDGVRTSSPGSTSQSQTYISLSVKGMMCMESCGQTVQQALDDVPGVRSVTVHFPTRTASVQVEPGANVTVTDLTTKLEVIGFESKCIATSTSEEPILEEANVNAVWAIASALGLVDRGCAMAWGDACNCXXXXXXVNCPQHMKKVSHAVDLVLKAVDLSSSKSPLPSPKGKP 2400
            C+Y  C++ A S GR FCRRHGEGRRCK  GC KVDVGGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGA V XXXXXXXXXXXXXXX+KLVRK+NRCTKHAS  S     S   AP  P A+ S            S       E +  P+  P    ++ A     P+SQ   + S  P  +R      R  A A P      R    SPPL         S       GPLP+                 +S  A    S S GL   +   P  L  +     +   V  A +GPLLQ  + +R          P+G    +    S P   RG  Q          LPRFD  + S      +   E       S+ G               R   PG     GS          +P ER      +   L G+   A    +R  H S    ERS SV   P       XXXX                 XXXXX     GS  A G +        G       L  P+     R G AP      P     +  +  A   +  + S  N   P    A L + P +    + A                                  G      +    TS P    Q+ ++ISLSV GMMCME+CGQTVQQAL  VPGV SVT+HFPTRTAS++V+  ANVT+ DLT+ L+ IGF S C+AT+T++EP LE+  VNAVWAIA+ALGLVD GCAMAWG  C+C      +NCPQHMKKVSHAVDLVL+A DLSSSK+P   PK KP
Sbjct:   18 CEYGGCSQ-ATSGGRRFCRRHGEGRRCKTPGCMKVDVGGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGADVLXXXXXXXXXXXXXXXKKLVRKNNRCTKHASDGS-----SGARAPPRPAASASLAXXXXXTKAAISATTAALTEAVGVPQVPPAARHQRAAASSARPKSQ---VYSSCPTKQRAPPPSQRV-AKATPDRPPSPRERHQSPPLRPHRRAGAESGGGFAAGGPLPS-----------------MSLMAAREPSPSFGLGGDVPP-PGGLSALREPGAVPSAVAAAAAGPLLQGQQQLRGAVGRFQDGIPRGREVFSPD-GSHPHHPRGMPQLAGMGSIGPGLPRFDGRDDSRAAQAASMGPELPHHAYASVGG-----------QGLVRDLLPGVTVANGSERVDMVNGSWMPSERMVGPAPAPQGLDGVDNRAPP--FRGGHFSKGAIERSPSVSPLPPSLLLQPXXXXFSMPFPASATGSREACGXXXXXKVVEGGSRDAAGMNGRQSATYGGGDSDRVPLNAPNAPVWERGGLAPTTTLAHPSAARTSDPQAAASTSAATAFSMSNGGLPTSQDAALSSRPVEPIRPLPAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGHKAPERTRACSTSPPAE--QTSSFISLSVSGMMCMENCGQTVQQALKKVPGVLSVTIHFPTRTASIKVDAKANVTLGDLTSALDAIGFGSSCVATTTTQEPTLEQDGVNAVWAIANALGLVDPGCAMAWGRPCSCGDDCRCINCPQHMKKVSHAVDLVLQAADLSSSKAPPEEPKPKP 832
[Close]
BLAST of mRNA_F-serratus_M_contig96.20920.1 vs. uniprot
Match: A0A6H5KKC5_9PHAE (HMA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKC5_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.070e-35
Identity = 309/809 (38.20%), Postives = 377/809 (46.60%), Query Frame = 1 
Query:    1 CQYESCTKPARSSGRPFCRRHGEGRRCKAHGCNKVDVGGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGAGVXXXXXXXXXXXXXXXXQKLVRKSNRCTKHASQVSEIATPSAVEAPIVPTAAPS------------STVDHTGEERLPSPEPQPPLSPEKPAEEPVVPQSQASGIM----SGNPVSERGAL----------ERDRAPALALPLADIGRRTG---SCSPPLPSIA---------SMNIVGPLPAPRATEALEDFRNMEKPVVSFKAIPPLSTSLGLTSSIADRPTPLLP-VPSLHHLDHRVKGAVSGPLLQKSIRSPKGPSTIAAGVTSSPEMARGFQQ---------PLPRFDAIESSPNQDRVAFRLERVRSLTGSLAGAVEDPPQPPHVSTAYRFFSPGGKALAGSLPEERASNRCDSVAALGLCRLAQSDRYRDDHQSERSYSVVVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSDVAQGWSQHYLHEVPGAQDRNGQLENPSGACIRTGAAPGDFPPTPPPLDIAGA-ERRAIAPSPDSTSCGNASPFVVKALLETSPG-------------DDPAAIQATVEGI--LPPDVRSQPYCSQYPSSGVGGVTQEGFSSGSVTDAGSDGVRTSSPGSTS----QSQTYISLSVKGMMCMESCGQTVQQALDDVPGVRSVTVHFPTRTASVQVEPGANVTVTDLTTKLEVIGFESKCIATSTSEEPILEEANVNAVWAIASALG 2223
            C+Y  C++ A S GR FCRRHGEGRRCK  GC KVDVGGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGA V XXXXXXXXXXXXXXX+KLVRK+NRCTKHAS  S     S   AP  P A+ S            S       E +  P+  P    ++ A     P++Q         +  P S+RGA           ER ++P L  P   +G  +G   +   PLPS++         S  + G +P P    AL +      P    +A+P        ++  A    PLL     LH    R +  +           P+GP   +A   + P+  RG  Q          L RFD  + S      +   E       ++ G   D    P V  A       G A    +P ER   +    A    CR +Q  +       ERS SV   P                                    G  V +G           A   NG+     G         GD    P     A A ER  +AP+        A    ++A   TS                D A     VE I  LP    + P                          G      +   STS    Q+ ++ISLSV GMMCME+CGQTVQQAL  VPGV SVT+HFPTRTAS++V+  ANVT+ DLT+ L+ IGF+S C+AT+T++EP LE+  VNAVWAIA+ALG
Sbjct:  163 CEYGGCSQ-ATSGGRRFCRRHGEGRRCKTPGCMKVDVGGGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKGAQAXXXXXXXXXXXXXXXXXXXXXXXXSGADVLXXXXXXXXXXXXXXXKKLVRKNNRCTKHASDGS-----SGARAPPRPAASASLXXXXXXTKAAISATTAALTEAVGVPQVPPAARHQRAAASLAGPKNQVYSPSPTKHTAPPSSQRGARATPDRPPSPRERHQSPPLR-PHRRVGAESGGGFAAGGPLPSMSLMAAREPSPSFGLGGDVPPPGGLSALRE------PACGERAVP--------SAVAAAAAGPLLQGQQQLHGAVGRAEDGI-----------PRGPEVFSAD-GNHPQHPRGMPQLAGMGAIGPGLRRFDGRDGSRAAQAASMGTEPSHHAYAAVDGGGLDRDLLPGVMVA-NGSERVGMANGSWMPSERMVGQ----APAPPCRGSQLSK----GAIERSPSVSPLPPSLLLQLPPLFSMPFSASATGSREACGGGGRC----GGKVVEGXXXXXXXXSRDAAGINGRESATYGG--------GDSDQVPLNAPNAPAWERGGLAPTMTLAHPSAARASDLQAAASTSAATVFSSKNGGLSTSQDAALSARLVEPIRPLPAAASAAPRXXXXXXXXXXXXXXXXXXXXXXXXXGDKAPERTRACSTSPPAEQTSSFISLSVSGMMCMENCGQTVQQALKKVPGVLSVTIHFPTRTASIKVDTEANVTLGDLTSALDAIGFDSSCVATTTAQEPTLEQDGVNAVWAIANALG 917
[Close]
BLAST of mRNA_F-serratus_M_contig96.20920.1 vs. uniprot
Match: A0A836CMV3_9STRA (HMA domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMV3_9STRA)

HSP 1 Score: 116 bits (290), Expect = 1.000e-22
Identity = 69/173 (39.88%), Postives = 90/173 (52.02%), Query Frame = 1 
Query: 1933 TYISLSVKGMMCMESCGQTVQQALDDVPGVRSVTVHFPTRTASVQVEPGANVTVTDLTTKLEVIGFESKCIATS-----------------------------------------------TSEEPILEEANVNAVWAIASALGLVDRGCAMAWGDACNCXXXXXX-VNCPQH 2307
            TY+SL+V+GMMCM  CG+TV++ L  VPGV +V+VHFPTRTASVQV+P +   +  L  +LE +GF++ CI+                                                 TSEEP++ ++  NAVWAIA  LGLVDRGC M+WG AC C        NC  H
Sbjct: 1062 TYVSLAVEGMMCMRDCGETVRRCLAGVPGVVTVSVHFPTRTASVQVDPASGAGIETLVERLEAVGFQATCISRCAVDMQSMCRVMRNVRSSQGTLRVLQSIXXXXXXXXXXXXXXXXXXXXTSEEPMVAQSE-NAVWAIAEVLGLVDRGCPMSWGGACACDPDKCRCTNCDVH 1233
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig96.20920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LC61_ECTSI5.120e-6341.44Putative copper transporter n=1 Tax=Ectocarpus sil... [more]
A0A6H5KKC5_9PHAE1.070e-3538.20HMA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CMV3_9STRA1.000e-2239.88HMA domain-containing protein n=1 Tax=Tribonema mi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig96contigF-serratus_M_contig96:637219..641737 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.3
Seed ortholog evalue2.8e-54
Seed eggNOG ortholog2880.D8LC61
Hectar predicted targeting categoryother localisation
EggNOG OGs28KZG@1,2QT78@2759
Ec32 ortholog descriptionEsV-1-7 domain protein, putative copper transporter
Ec32 orthologEc-20_004580.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons7
Model size2540
Cds size2106
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932727.5363088-UTR-F-serratus_M_contig96:637218..6373371622932727.5363088-UTR-F-serratus_M_contig96:637218..637337Fucus serratus maleUTRF-serratus_M_contig96 637219..637337 -
1690964443.6121635-UTR-F-serratus_M_contig96:637218..6373371690964443.6121635-UTR-F-serratus_M_contig96:637218..637337Fucus serratus maleUTRF-serratus_M_contig96 637219..637337 -
1622932727.625402-UTR-F-serratus_M_contig96:640804..6409321622932727.625402-UTR-F-serratus_M_contig96:640804..640932Fucus serratus maleUTRF-serratus_M_contig96 640805..640932 -
1690964443.6869557-UTR-F-serratus_M_contig96:640804..6409321690964443.6869557-UTR-F-serratus_M_contig96:640804..640932Fucus serratus maleUTRF-serratus_M_contig96 640805..640932 -
1622932727.6446416-UTR-F-serratus_M_contig96:641181..6412661622932727.6446416-UTR-F-serratus_M_contig96:641181..641266Fucus serratus maleUTRF-serratus_M_contig96 641182..641266 -
1690964443.6997843-UTR-F-serratus_M_contig96:641181..6412661690964443.6997843-UTR-F-serratus_M_contig96:641181..641266Fucus serratus maleUTRF-serratus_M_contig96 641182..641266 -
1622932727.66497-UTR-F-serratus_M_contig96:641635..6417371622932727.66497-UTR-F-serratus_M_contig96:641635..641737Fucus serratus maleUTRF-serratus_M_contig96 641636..641737 -
1690964443.7128506-UTR-F-serratus_M_contig96:641635..6417371690964443.7128506-UTR-F-serratus_M_contig96:641635..641737Fucus serratus maleUTRF-serratus_M_contig96 641636..641737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932727.5507002-CDS-F-serratus_M_contig96:637337..6374421622932727.5507002-CDS-F-serratus_M_contig96:637337..637442Fucus serratus maleCDSF-serratus_M_contig96 637338..637442 -
1690964443.6248367-CDS-F-serratus_M_contig96:637337..6374421690964443.6248367-CDS-F-serratus_M_contig96:637337..637442Fucus serratus maleCDSF-serratus_M_contig96 637338..637442 -
1622932727.5669496-CDS-F-serratus_M_contig96:637746..6378411622932727.5669496-CDS-F-serratus_M_contig96:637746..637841Fucus serratus maleCDSF-serratus_M_contig96 637747..637841 -
1690964443.6349885-CDS-F-serratus_M_contig96:637746..6378411690964443.6349885-CDS-F-serratus_M_contig96:637746..637841Fucus serratus maleCDSF-serratus_M_contig96 637747..637841 -
1622932727.5842242-CDS-F-serratus_M_contig96:638086..6382401622932727.5842242-CDS-F-serratus_M_contig96:638086..638240Fucus serratus maleCDSF-serratus_M_contig96 638087..638240 -
1690964443.645637-CDS-F-serratus_M_contig96:638086..6382401690964443.645637-CDS-F-serratus_M_contig96:638086..638240Fucus serratus maleCDSF-serratus_M_contig96 638087..638240 -
1622932727.598514-CDS-F-serratus_M_contig96:638745..6404891622932727.598514-CDS-F-serratus_M_contig96:638745..640489Fucus serratus maleCDSF-serratus_M_contig96 638746..640489 -
1690964443.65579-CDS-F-serratus_M_contig96:638745..6404891690964443.65579-CDS-F-serratus_M_contig96:638745..640489Fucus serratus maleCDSF-serratus_M_contig96 638746..640489 -
1622932727.6131103-CDS-F-serratus_M_contig96:640796..6408041622932727.6131103-CDS-F-serratus_M_contig96:640796..640804Fucus serratus maleCDSF-serratus_M_contig96 640797..640804 -
1690964443.6674414-CDS-F-serratus_M_contig96:640796..6408041690964443.6674414-CDS-F-serratus_M_contig96:640796..640804Fucus serratus maleCDSF-serratus_M_contig96 640797..640804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig96.20920.1prot_F-serratus_M_contig96.20920.1Fucus serratus malepolypeptideF-serratus_M_contig96 637338..640804 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig96.20920.1

>prot_F-serratus_M_contig96.20920.1 ID=prot_F-serratus_M_contig96.20920.1|Name=mRNA_F-serratus_M_contig96.20920.1|organism=Fucus serratus male|type=polypeptide|length=702bp
MTSAQSGAGVLCIKHGGGKRCLVPGCQKLVRKSNRCTKHASQVSEIATPS
AVEAPIVPTAAPSSTVDHTGEERLPSPEPQPPLSPEKPAEEPVVPQSQAS
GIMSGNPVSERGALERDRAPALALPLADIGRRTGSCSPPLPSIASMNIVG
PLPAPRATEALEDFRNMEKPVVSFKAIPPLSTSLGLTSSIADRPTPLLPV
PSLHHLDHRVKGAVSGPLLQKSIRSPKGPSTIAAGVTSSPEMARGFQQPL
PRFDAIESSPNQDRVAFRLERVRSLTGSLAGAVEDPPQPPHVSTAYRFFS
PGGKALAGSLPEERASNRCDSVAALGLCRLAQSDRYRDDHQSERSYSVVV
APPPRNHSPYLLRPPPMAERMTVIAAPTRVENGGGDGGGSDVAQGWSQHY
LHEVPGAQDRNGQLENPSGACIRTGAAPGDFPPTPPPLDIAGAERRAIAP
SPDSTSCGNASPFVVKALLETSPGDDPAAIQATVEGILPPDVRSQPYCSQ
YPSSGVGGVTQEGFSSGSVTDAGSDGVRTSSPGSTSQSQTYISLSVKGMM
CMESCGQTVQQALDDVPGVRSVTVHFPTRTASVQVEPGANVTVTDLTTKL
EVIGFESKCIATSTSEEPILEEANVNAVWAIASALGLVDRGCAMAWGDAC
NCGDSCNCVNCPQHMKKVSHAVDLVLKAVDLSSSKSPLPSPKGKPCPITT
K*
back to top

mRNA from alignment at F-serratus_M_contig96:637219..641737-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig96.20920.1 ID=mRNA_F-serratus_M_contig96.20920.1|Name=mRNA_F-serratus_M_contig96.20920.1|organism=Fucus serratus male|type=mRNA|length=4519bp|location=Sequence derived from alignment at F-serratus_M_contig96:637219..641737- (Fucus serratus male)
TGCCAGTACGAGAGCTGCACGAAGCCTGCCCGCAGCTCTGGTCGGCCGTT
TTGCCGACGCCACGGCGAGGGGCGTCGCTGTAAGGCGCACGGCTGTAACA
AGGTGACCAAGGATGAGCGATGCCAAAAACTCGCGATGATCGAGTTGTTG
TTGTTTTTGTTCTTCACATTCAGCGTATATTGGCTGCCAACCCGGAAAAA
ACCCCTACTTTACACGGTGGCCAATCCCGCTCGTGGTCTGCTGAACAGGG
AAAAAAGAAAAAAGAAAAAGCCTGGCAGCGCACCCCCCCCCCTCCCCTCC
CGCGCTGCTCGTTATTAACAAGTTAATATATTAATATTAATAGGAGAAAA
TGGAATAAAAACCACGCGACGTGTCTACATGAAAGGTTTCAAACAGAAAG
GCGCTGAGAGTAGGGAGAGGTCTAAAGTACCTTACCGCTACCCTCGTTTG
TTTTGTCTGTACAATCTGCAGGTGGACGTTGGGGGGGGTAACTGTCGAAG
GCACGGAGGGGGGCGGCGTTGTGGAGCTGATGGCTGTCTTAAGACCGATG
TCGGAGGTGAGGTGCTCGCCAGCGCGCCTAGAATTCAACGAGCAAACACT
TTTTATTGTGTTTGTAGCGCGGAACATGGTGCTGTGTCGGCCGTCCCTAG
AAGTCTAATGGAGCGACCAGTCGAAATCCGAATCTCGTCTCTTGAGCATT
CTCTTACGTGTGGTATCCGTCACTAAGTGTCTGGAATTACAGGGTAAAGC
TCTTGCTGCCTACCGACGAAAAACACCTCTCGCCCGCCATTGCTTCGCGA
GAAAGGAGGGTTTTGCGTCAGCCACGGAGGCGGAAAGCGCTGCCAGGCCG
ATGGGTGTGCCAAGGGAGCGCAAGCAGGGGGGGTGTTCTGCAAATCACAC
GGTGGCGGAAGGCGCTGCCGCATCGAAGGGTGTATGACGAGGTGAGAGTG
AGAGCACGCAAAGTAGAGTCGCAACCAAGCGTGTTCGCTCCCGACATAAT
CCAGTCGCGATAAGGGGAATATTCGCGTACGGTCGTAGAAAACATCTTGG
CGTTCGTCAATTTCACGATTCGACTTTAATATCCCGTGCATATGTTAAGA
GAATCGTGCGGTGGCCCATGATTCTCCGCGAACGCTCGCTCACGTGAACA
ATATTTCAGCATATATTTCAGCATATCCGTCACCACCACCGCCACCTCGG
CCGCTCTCCTGACTTACTGAGTAGCCTTACGTTTTGCGCCCCCCGCAGTG
CTCAAAGTGGCGCAGGCGTGCTGTGCATCAAGCACGGCGGCGGCAAGCGG
TGCCTTGTGCCGGGGTGCCAAAAACTCGTGCGAAAGAGCAACCGATGTAC
GAAGCACGCCTCGCAAGTCTCGGAGATCGCGACGCCGTCTGCGGTAGAGG
CACCGATTGTGCCGACGGCTGCTCCAAGTAGCACGGTGGATCACACCGGA
GAGGAACGCCTTCCATCACCGGAACCGCAACCTCCCTTGAGCCCCGAGAA
ACCCGCGGAAGAGCCTGTCGTTCCTCAGTCTCAAGCAAGCGGGATCATGT
CCGGCAACCCTGTAAGCGAACGTGGAGCCCTGGAGCGCGACCGAGCGCCT
GCGCTGGCTCTCCCTCTCGCTGATATCGGCCGGCGCACGGGTTCCTGCAG
TCCACCGTTGCCATCGATAGCTTCGATGAACATAGTTGGGCCACTGCCCG
CCCCGCGCGCGACTGAAGCTCTTGAAGACTTTCGTAATATGGAGAAACCT
GTGGTATCCTTTAAGGCGATCCCTCCGTTGTCAACCAGCCTGGGCTTGAC
GTCGTCCATCGCCGATCGGCCGACGCCGCTGCTGCCTGTGCCATCCCTCC
ATCACCTCGATCACAGAGTCAAGGGGGCGGTGTCGGGACCTCTGCTTCAG
AAATCGATACGGTCGCCCAAGGGGCCCTCTACGATCGCAGCTGGTGTAAC
GTCGTCGCCTGAGATGGCGCGAGGTTTTCAGCAACCGCTCCCAAGGTTCG
ACGCTATAGAGTCTTCGCCAAACCAAGACCGTGTCGCCTTCCGCTTGGAA
CGGGTTCGTAGTCTGACCGGGAGCCTAGCCGGCGCCGTAGAAGACCCCCC
ACAGCCGCCACACGTCTCCACAGCCTACCGGTTCTTCTCACCTGGTGGCA
AGGCTCTGGCTGGCTCTCTCCCCGAGGAGAGAGCCAGCAATCGCTGCGAT
AGCGTGGCGGCGCTCGGTCTCTGCCGCCTGGCACAATCCGACCGATATCG
CGACGACCACCAGAGTGAGCGGTCGTATTCGGTGGTGGTGGCTCCTCCGC
CTCGCAACCACTCTCCCTATCTGCTGCGACCGCCACCAATGGCTGAAAGA
ATGACTGTAATCGCCGCTCCGACTCGTGTGGAAAACGGTGGCGGTGATGG
TGGTGGCAGCGACGTCGCCCAAGGTTGGTCGCAACACTACCTTCACGAGG
TGCCGGGGGCGCAAGATAGAAACGGCCAACTGGAGAACCCGTCAGGTGCG
TGCATAAGGACCGGAGCAGCGCCGGGAGACTTTCCCCCGACTCCTCCGCC
GCTTGACATTGCTGGTGCTGAACGCCGTGCCATCGCACCATCTCCCGATT
CTACCTCTTGCGGTAATGCTTCACCCTTCGTGGTTAAGGCTCTCCTGGAA
ACGTCACCGGGCGATGATCCGGCCGCAATCCAGGCAACCGTGGAGGGTAT
TCTACCGCCCGATGTGCGATCCCAGCCTTATTGCAGCCAGTATCCTTCTT
CGGGTGTGGGAGGCGTCACGCAGGAGGGTTTCTCCTCTGGTAGCGTGACT
GACGCAGGATCGGACGGGGTGAGGACTTCCTCTCCTGGTTCTACCTCGCA
GTCGCAGACATACATAAGCCTCTCCGTGAAGGGAATGATGTGCATGGAAA
GCTGTGGCCAGACGGTGCAGCAAGCATTGGATGATGTGCCCGGCGTTCGG
AGTGTAACGGTGCACTTTCCGACGAGAACGGCCTCGGTGCAGGTAAGCTT
TCTCGTTCCGGTACCGAGTGTGCACAGCATCAGGTGGGAAAGTTGGAATG
CTTGTTTCCGATAGAAAACCCGCGTTTGCGCCCCTGATTATACCGTCTTT
GTATACTACAGCAGGTCGTTTTGCTTGCGGGTGCCGACACCATCGGTCCA
ACCCGGGTGGCTAGTGGTGGTACGCGGATGGTTATGATTGCGTTGTTGCA
CAGGTCTCAGCGAAGGCGTTTTACTGAGAGAAAGTGGTGTGGTTCCGGAC
GGTGAGGGTGTCGCCTTACACAAAATAGTAAGGGTAACCCTGACGATCTC
CTTTTTCGTGGTGTTTTCGATGACAATCTCCGTACGCTTCACCATAATGT
CATATTTTTGGGAACACTTCGATGAGCGGGGGCATTGCTCGGCCGTGCAG
ACCATGGCGAGCAGCGACCTCCACAAAAAAACCCGGCGCGATGCTTTCCG
TAGCCCCCCCCAACACATGGTTGAATTATGTGCACGTCATGCACCAGGTC
GAGCCCGGAGCAAACGTGACCGTCACCGATCTCACGACGAAGCTTGAAGT
TATCGGCTTCGAGTCGAAGTGCATCGCCACGTCTACCTCCGAGGAACCCA
TCCTTGAGGAGGCCAACGTTAACGCCGTCTGGGCAATCGCCAGTGCGCTG
GGTGGGTTGAATTGTGTCACTGGTGTGTCGATGGAGTAGTGCGAGTGCGG
ATCGTGGGAACCGGCAGTAACAAGAGAGGCGGACGTTAGCGCCAGTCTAC
GACGCGAGGCATTCCGTGATTGTTTTGCCTCTGGGCACCGGACGTCGCGC
GCCGTGCGTGCCCAATCCCGCCTCAAGGCCTCACGCGACGTCCGGTTGAC
CCCCTTGATCCACGCTGCCTCGCCCGATGTCTTTTCGTTGTCCTAGGTCT
CGTTGATCGGGGTTGCGCCATGGCGTGGGGAGACGCGTGCAACTGCGGGG
ACAGCTGCAATTGCGTCAACTGCCCACAGCACATGAAGAAGGTAAGGGCA
TCGATCGACTCCGGCTACCATACTATAGCAAGGTAAGTGGCAAGATTTTT
TCGTCGGGAATTTTTCTCGTGTGCGTTTCAGTGCCGCCATTCCACGTAGG
GTTGACTCTCTTTCGAGCCTCTTCCACCTGTGCCCTCCCGAAAGCCCCAG
ACGGTCCCTGTCCGGTTCTACCTGACAACGGCTTCATGCTCCATGCAAGG
CAGATTCGATTGCATTCGAGACTCCCAAGAGTCTAGCTCATGCGTCTTAT
TGAAAAAGGCGTACGCCCGCTGTCTTTCCATCCCCTCTCTTGAAGGTTTC
TCACGCCGTCGATCTCGTGCTGAAGGCTGTGGACTTAAGCAGCTCCAAGA
GTCCGTTGCCTTCACCGAAGGGAAAACCATGCCCAATTACTACCAAATAA
GGAGTTGCCTGCTGTTGCCTGCTGCCGTTGTTGTATGCAAATAGTACTGT
GGGTCATGATACGCCGAGAGCACAGTATATCGTCCGCGTCTGACGGAGGG
TGCTATTAATAGTATGGAG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig96:637219..641737-

>mRNA_F-serratus_M_contig96.20920.1 ID=mRNA_F-serratus_M_contig96.20920.1|Name=mRNA_F-serratus_M_contig96.20920.1|organism=Fucus serratus male|type=CDS|length=4212bp|location=Sequence derived from alignment at F-serratus_M_contig96:637219..641737- (Fucus serratus male)
ATGACGAGATGACGAGTGCTCAAAGTGGCGCAGGCGTGCTGTGCATCAAG
CACGGCGGCGGCAAGCGGTGCCTTGTGCCGGGGTGCCAAAAACTCGTGCG
AAAGAGCAACCGATGTACGAAGCACGCCTCGCAAGTCTCGGAGATCGCGA
CGCCGTCTGCGGTAGAGGCACCGATTGTGCCGACGGCTGCTCCAAGTAGC
ACGGTGGATCACACCGGAGAGGAACGCCTTCCATCACCGGAACCGCAACC
TCCCTTGAGCCCCGAGAAACCCGCGGAAGAGCCTGTCGTTCCTCAGTCTC
AAGCAAGCGGGATCATGTCCGGCAACCCTGTAAGCGAACGTGGAGCCCTG
GAGCGCGACCGAGCGCCTGCGCTGGCTCTCCCTCTCGCTGATATCGGCCG
GCGCACGGGTTCCTGCAGTCCACCGTTGCCATCGATAGCTTCGATGAACA
TAGTTGGGCCACTGCCCGCCCCGCGCGCGACTGAAGCTCTTGAAGACTTT
CGTAATATGGAGAAACCTGTGGTATCCTTTAAGGCGATCCCTCCGTTGTC
AACCAGCCTGGGCTTGACGTCGTCCATCGCCGATCGGCCGACGCCGCTGC
TGCCTGTGCCATCCCTCCATCACCTCGATCACAGAGTCAAGGGGGCGGTG
TCGGGACCTCTGCTTCAGAAATCGATACGGTCGCCCAAGGGGCCCTCTAC
GATCGCAGCTGGTGTAACGTCGTCGCCTGAGATGGCGCGAGGTTTTCAGC
AACCGCTCCCAAGGTTCGACGCTATAGAGTCTTCGCCAAACCAAGACCGT
GTCGCCTTCCGCTTGGAACGGGTTCGTAGTCTGACCGGGAGCCTAGCCGG
CGCCGTAGAAGACCCCCCACAGCCGCCACACGTCTCCACAGCCTACCGGT
TCTTCTCACCTGGTGGCAAGGCTCTGGCTGGCTCTCTCCCCGAGGAGAGA
GCCAGCAATCGCTGCGATAGCGTGGCGGCGCTCGGTCTCTGCCGCCTGGC
ACAATCCGACCGATATCGCGACGACCACCAGAGTGAGCGGTCGTATTCGG
TGGTGGTGGCTCCTCCGCCTCGCAACCACTCTCCCTATCTGCTGCGACCG
CCACCAATGGCTGAAAGAATGACTGTAATCGCCGCTCCGACTCGTGTGGA
AAACGGTGGCGGTGATGGTGGTGGCAGCGACGTCGCCCAAGGTTGGTCGC
AACACTACCTTCACGAGGTGCCGGGGGCGCAAGATAGAAACGGCCAACTG
GAGAACCCGTCAGGTGCGTGCATAAGGACCGGAGCAGCGCCGGGAGACTT
TCCCCCGACTCCTCCGCCGCTTGACATTGCTGGTGCTGAACGCCGTGCCA
TCGCACCATCTCCCGATTCTACCTCTTGCGGTAATGCTTCACCCTTCGTG
GTTAAGGCTCTCCTGGAAACGTCACCGGGCGATGATCCGGCCGCAATCCA
GGCAACCGTGGAGGGTATTCTACCGCCCGATGTGCGATCCCAGCCTTATT
GCAGCCAGTATCCTTCTTCGGGTGTGGGAGGCGTCACGCAGGAGGGTTTC
TCCTCTGGTAGCGTGACTGACGCAGGATCGGACGGGGTGAGGACTTCCTC
TCCTGGTTCTACCTCGCAGTCGCAGACATACATAAGCCTCTCCGTGAAGG
GAATGATGTGCATGGAAAGCTGTGGCCAGACGGTGCAGCAAGCATTGGAT
GATGTGCCCGGCGTTCGGAGTGTAACGGTGCACTTTCCGACGAGAACGGC
CTCGGTGCAGTGCTCAAAGTGGCGCAGGCGTGCTGTGCATCAAGCACGGC
GGCGGCAAGCGGTGCCTTGTGCCGGGGTGCCAAAAACTCGTGCGAAAGAG
CAACCGATGTACGAAGCACGCCTCGCAAGTCTCGGAGATCGCGACGCCGT
CTGCGGTAGAGGCACCGATTGTGCCGACGGCTGCTCCAAGTAGCACGGTG
GATCACACCGGAGAGGAACGCCTTCCATCACCGGAACCGCAACCTCCCTT
GAGCCCCGAGAAACCCGCGGAAGAGCCTGTCGTTCCTCAGTCTCAAGCAA
GCGGGATCATGTCCGGCAACCCTGTAAGCGAACGTGGAGCCCTGGAGCGC
GACCGAGCGCCTGCGCTGGCTCTCCCTCTCGCTGATATCGGCCGGCGCAC
GGGTTCCTGCAGTCCACCGTTGCCATCGATAGCTTCGATGAACATAGTTG
GGCCACTGCCCGCCCCGCGCGCGACTGAAGCTCTTGAAGACTTTCGTAAT
ATGGAGAAACCTGTGGTATCCTTTAAGGCGATCCCTCCGTTGTCAACCAG
CCTGGGCTTGACGTCGTCCATCGCCGATCGGCCGACGCCGCTGCTGCCTG
TGCCATCCCTCCATCACCTCGATCACAGAGTCAAGGGGGCGGTGTCGGGA
CCTCTGCTTCAGAAATCGATACGGTCGCCCAAGGGGCCCTCTACGATCGC
AGCTGGTGTAACGTCGTCGCCTGAGATGGCGCGAGGTTTTCAGCAACCGC
TCCCAAGGTTCGACGCTATAGAGTCTTCGCCAAACCAAGACCGTGTCGCC
TTCCGCTTGGAACGGGTTCGTAGTCTGACCGGGAGCCTAGCCGGCGCCGT
AGAAGACCCCCCACAGCCGCCACACGTCTCCACAGCCTACCGGTTCTTCT
CACCTGGTGGCAAGGCTCTGGCTGGCTCTCTCCCCGAGGAGAGAGCCAGC
AATCGCTGCGATAGCGTGGCGGCGCTCGGTCTCTGCCGCCTGGCACAATC
CGACCGATATCGCGACGACCACCAGAGTGAGCGGTCGTATTCGGTGGTGG
TGGCTCCTCCGCCTCGCAACCACTCTCCCTATCTGCTGCGACCGCCACCA
ATGGCTGAAAGAATGACTGTAATCGCCGCTCCGACTCGTGTGGAAAACGG
TGGCGGTGATGGTGGTGGCAGCGACGTCGCCCAAGGTTGGTCGCAACACT
ACCTTCACGAGGTGCCGGGGGCGCAAGATAGAAACGGCCAACTGGAGAAC
CCGTCAGGTGCGTGCATAAGGACCGGAGCAGCGCCGGGAGACTTTCCCCC
GACTCCTCCGCCGCTTGACATTGCTGGTGCTGAACGCCGTGCCATCGCAC
CATCTCCCGATTCTACCTCTTGCGGTAATGCTTCACCCTTCGTGGTTAAG
GCTCTCCTGGAAACGTCACCGGGCGATGATCCGGCCGCAATCCAGGCAAC
CGTGGAGGGTATTCTACCGCCCGATGTGCGATCCCAGCCTTATTGCAGCC
AGTATCCTTCTTCGGGTGTGGGAGGCGTCACGCAGGAGGGTTTCTCCTCT
GGTAGCGTGACTGACGCAGGATCGGACGGGGTGAGGACTTCCTCTCCTGG
TTCTACCTCGCAGTCGCAGACATACATAAGCCTCTCCGTGAAGGGAATGA
TGTGCATGGAAAGCTGTGGCCAGACGGTGCAGCAAGCATTGGATGATGTG
CCCGGCGTTCGGAGTGTAACGGTGCACTTTCCGACGAGAACGGCCTCGGT
GCAGGTCGAGCCCGGAGCAAACGTGACCGTCACCGATCTCACGACGAAGC
TTGAAGTTATCGGCTTCGAGTCGAAGTGCATCGCCACGTCTACCTCCGAG
GAACCCATCCTTGAGGAGGCCAACGTTAACGCCGTCTGGGCAATCGCCAG
TGCGCTGGGTCGAGCCCGGAGCAAACGTGACCGTCACCGATCTCACGACG
AAGCTTGAAGTTATCGGCTTCGAGTCGAAGTGCATCGCCACGTCTACCTC
CGAGGAACCCATCCTTGAGGAGGCCAACGTTAACGCCGTCTGGGCAATCG
CCAGTGCGCTGGGTCTCGTTGATCGGGGTTGCGCCATGGCGTGGGGAGAC
GCGTGCAACTGCGGGGACAGCTGCAATTGCGTCAACTGCCCACAGCACAT
GAAGAAGGTCTCGTTGATCGGGGTTGCGCCATGGCGTGGGGAGACGCGTG
CAACTGCGGGGACAGCTGCAATTGCGTCAACTGCCCACAGCACATGAAGA
AGGTTTCTCACGCCGTCGATCTCGTGCTGAAGGCTGTGGACTTAAGCAGC
TCCAAGAGTCCGTTGCCTTCACCGAAGGGAAAACCATGCCCAATTACTAC
CAAATAAGTTTCTCACGCCGTCGATCTCGTGCTGAAGGCTGTGGACTTAA
GCAGCTCCAAGAGTCCGTTGCCTTCACCGAAGGGAAAACCATGCCCAATT
ACTACCAAATAA
back to top