mRNA_F-serratus_M_contig96.20919.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig96.20919.1
Unique NamemRNA_F-serratus_M_contig96.20919.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig96.20919.1 vs. uniprot
Match: D7G4D7_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4D7_ECTSI)

HSP 1 Score: 381 bits (978), Expect = 3.280e-128
Identity = 175/309 (56.63%), Postives = 224/309 (72.49%), Query Frame = 1 
Query:    1 GGTSFPLFWA----EHAENGNYLEPQEISVRHGVCGDPKQRTEEEWNRYSTPNSIWPIQKTLEKGSVMEVTVMMNAYHWGHLEFFLCDAAKLEDPGGVVTQECLNMNPLTRAEGDNDNSPIDPDYSGRYYVDPECHKDETDQGSLTPEDVEDEYYLLHMRYQLPSQLVCEHCILQMVYYTGNTCNHVGYDEFDPPSWPSECAPDKDNWIRSNLKICGEGDKYPEEFYSCSDISITENGEPNPTPAPSEPISDCLDPVELFEQCGGEDWQGSECCRDGFECVFESESYSEVSSSRARPDVFDPPTCSEEW 915
            G   +PL WA    E AENGNYLE  EI+ RHG+CGDP+Q  EE  N YSTPN  WPI  T ++G V+E+ + M AYHWGH+EFF+C+A ++EDP G+  QEC N  PLTRAEGD++NSPIDP+Y GRYYVDP+C + ETDQ    PE  +D Y ++H  YQLP  L C+ CILQM YYTGN+C HVGY+EF+P SWPS CAP+K +WI  +  +CGE   YPEEF++C+D +IT +G  NPTPAP+EP++DCLDPV  ++QCGGED++GS+CCR+G+EC   +  Y     S+ RP    P  CSE+W
Sbjct:   46 GDGEWPLRWAYEKGEMAENGNYLEKDEIAKRHGICGDPEQNEEEGANFYSTPNGDWPILNTYQEGQVLEIKLGMTAYHWGHVEFFICNADEMEDPDGIANQECFNNYPLTRAEGDDENSPIDPNYPGRYYVDPKCREGETDQ--TKPEGAQDGY-VIHASYQLPEGLTCDRCILQMNYYTGNSCKHVGYEEFEPASWPSACAPEKHDWIELDRYLCGENGSYPEEFWACADFAITPDGMANPTPAPTEPLADCLDPVGPYDQCGGEDYEGSDCCREGYECTEMASCY-----SQCRPI---PGGCSEDW 343
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BLAST of mRNA_F-serratus_M_contig96.20919.1 vs. uniprot
Match: D7FZR0_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 2.510e-100
Identity = 160/328 (48.78%), Postives = 210/328 (64.02%), Query Frame = 1 
Query:    1 GGTSFPLFWAEHAENGNYLEPQEISVRHGVCGDPKQRTEEEWNRYSTPNSIWPIQKTLEKGSVMEVTVMMNAYHWGHLEFFLCDAAKLEDPGGVVTQECLNMNPLTRAEGDNDNSPIDPDYSGRYYVDPECHKD--ETDQG----SLTPEDVEDEYYLLHMRYQLPSQLVCEHCILQMVYYTGNTCNHVGYDEFDPPSWPSECAPDKDNWIRSNLKICGEGDKYPEEFYSCSDISITENGEPNPTPAPS----EPISDCLDPVELFEQCGGED-------WQGSECCRDGFECVFESESYSEV-----SSSRARPDVFDPPTCSEEWG 918
            GG+ FPL +   A NGNYLEP E++VRHGVCGDP+Q      N YST +S W    T   G V+E  ++MNA+HWGHLEFF+C+A    DP G+ TQEC N  PLTRAEGD+DNSPIDP++ GRYY DP C     E DQ     +++ E+++       MRY LP  + C HCILQMVY+TGNTC+H+GY+EF+PPSWPS CAP+K++W+ +  + CG+G  YPEEF++CSD SIT +  P P+P PS     P+++  +  E + QCGG         W G  CC  G  C ++ E +SE      SSS   P+  +P  C+EEWG
Sbjct:   77 GGSEFPLAFVPLAPNGNYLEPNEVAVRHGVCGDPEQTKPAGSNTYSTASSNWEPLATYRSGQVLEFVIVMNAHHWGHLEFFICNADN--DPDGIPTQECFNEYPLTRAEGDDDNSPIDPNFPGRYYCDPTCRGQTGEVDQTKPLHAISGENMK-------MRYVLPD-IECSHCILQMVYHTGNTCHHIGYEEFNPPSWPSACAPNKEDWVDTTREACGQGGYYPEEFWACSDFSITRDATP-PSPTPSVETIPPVNEPTECAEEWGQCGGAGGGAVDGVWTGPTCCVSGTTCSYKDEWWSECRPTGDSSSDDTPE--EPTECAEEWG 391
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BLAST of mRNA_F-serratus_M_contig96.20919.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 303 bits (775), Expect = 3.690e-96
Identity = 143/266 (53.76%), Postives = 182/266 (68.42%), Query Frame = 1 
Query:    1 GGTSFPLFWAEHAENGNYLEPQEISVRHGVCGDPKQRTEEEWNRYSTPNSIWPIQKTLEKGSVMEVTVMMNAYHWGHLEFFLCDAAKLEDPGGVVTQECLNMNPLTRAEGDNDNSPIDPDYSGRYYVDPECHKDETDQGSLTPEDVEDEYYLLHMRYQLPSQLVCEHCILQMVYYTGNTCNHVGYDEFDPPSWPSECAPDKDNWIRSNLKICGEGDKYPEEFYSCSDISITENGE-----PNPTPAPSEPISDCLDP-VELFEQCG 780
            GG  FPL++ E A+NGNYLE  EI+ RHGVCGDP+Q  +E  N YST N  W    +   G V+E+ ++MNAYHWGH EFF+C+   ++DP GV TQEC NM+PLTRA+ D D SPIDP+Y GRYYVDPEC ++ET+Q S + E      Y + MRY LP  + CEHCILQMVYYTGNTC H+GY+EF+P SWPS CAP+K +WI  +  +CG   +YPEEF++CSD S+T +G      P P P   E   D  D  +E++E  G
Sbjct:   79 GGEEFPLYFGEFADNGNYLETNEIAKRHGVCGDPEQNADEGTNVYSTANINWDPLDSFTSGQVLEMDIVMNAYHWGHCEFFVCNTDDMDDPDGVPTQECFNMHPLTRADDDGDASPIDPNYPGRYYVDPECREEETEQSSNSIEG-----YNIKMRYVLPD-IECEHCILQMVYYTGNTCKHIGYEEFNPTSWPSSCAPNKWDWIELDRYVCGTRGQYPEEFWACSDFSMTSDGSTPADAPMPDPVDEEDDEDSTDGGMEMYEYVG 338
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BLAST of mRNA_F-serratus_M_contig96.20919.1 vs. uniprot
Match: D7FZQ9_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ9_ECTSI)

HSP 1 Score: 296 bits (758), Expect = 7.000e-94
Identity = 152/307 (49.51%), Postives = 188/307 (61.24%), Query Frame = 1 
Query:    1 GGTSFPLFWAEHAENGNYLEPQEISVRHGVCGDPKQRTEEEWNRYSTPNSIWPIQKTLEKGSVMEVTVMMNAYHWGHLEFFLCDAAKLEDPGGVVTQECLNMNPLTRAEGDNDNSPIDPDYSGRYYVDPECHKDETDQGSLTP-EDVEDEYYLLHMRYQLPSQLVCEHCILQMVYYTGNTCNHVGYDEFDPPSWPSECAPDKDNWIRSNLKICGEGDKYPEEFYSCSDISITENGEPNPT------PAPSEPISDCLDPVELFEQCGGED-------WQGSECCRDGFECVFESESYSEVSSSRARP 879
            GG  FPL +   A NGNYLEP E++VRHGVCGDP+Q      N YST +S W    T + G  +E  V+MNAYHWGHLEFF+C+A    DP G+ TQEC N  PLTRAEGD+ NSPIDPD+ GRYY DP C  +E +     P   +  E   + MRY LP  + C HCILQMVY+TGNTC H+GYD+FDPPSWP +CA  K+ W+ + ++ CG+   YPEEF++CSD SIT +G P+ T      PA +EP   C    E ++QCGG         W G  CC  G  C      Y +V  S  RP
Sbjct:   78 GGIDFPLSFVPRAPNGNYLEPNEVAVRHGVCGDPEQNKPSGSNTYSTASSNWEPLTTFQSGQDLEFNVVMNAYHWGHLEFFICNADN--DPNGIPTQECFNEYPLTRAEGDDYNSPIDPDFPGRYYCDPTCRGEEGEVDQTKPVHAISGEN--MKMRYVLPD-IECSHCILQMVYHTGNTCYHIGYDDFDPPSWPGDCATTKEQWVNTTVEACGQEGYYPEEFWACSDFSITSDGPPSSTXXXXXXPAVTEPTG-C---AEEWQQCGGAGGDAVGGVWTGPTCCVPGTTCY-----YKDVYWSDCRP 370
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BLAST of mRNA_F-serratus_M_contig96.20919.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 266 bits (679), Expect = 1.570e-83
Identity = 124/244 (50.82%), Postives = 163/244 (66.80%), Query Frame = 1 
Query:    1 GGTSFPLFWAEHAENGNYLEPQEISVRHGVCGDPKQRTEEEWNRYSTPNSIWPIQKTLEKGSVMEVTVMMNAYHWGHLEFFLCDAAKLEDPGG---VVTQECLNMNPLTRAEGDNDNSPIDPDYSGRYYVDPECHKDETDQGSLT---PEDVEDEYYLLHMRYQLPSQLVCEHCILQMVYYTGNTCNHVGYDEFDPPSWPSECAPDKDNWIRSNLKICGEGDKYPEEFYSCSDISITENGEPNP 714
            G   +P F  E AENGNY+E +E++ RHG+CGDP+Q   E  N+Y   NS +P+++T  +G ++EV ++++ YHWGH+E FLC+AA L  PGG    VTQ C N +PL RA+ D  N P DPD +GR+ +DP C   ETDQ  L    P DV         R++LP  L CE C++QMVYYTGN+C H GY EF+PPSWPS CAP K +WI   +  CG+GD YPEEF++C+DISIT +G P P
Sbjct:   74 GDKPWPHFNGERAENGNYIESEEVARRHGICGDPEQTAAESSNKYGQENSNYPVRETYAEGGILEVKIVVSTYHWGHVEMFLCNAANL--PGGPDSTVTQSCFNEHPLDRADDDEFNGPADPDNTGRFILDPPCRASETDQALLDGAYPSDV------ATARFKLPQGLSCERCVVQMVYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDGGPAP 309
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BLAST of mRNA_F-serratus_M_contig96.20919.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 7.370e-82
Identity = 136/249 (54.62%), Postives = 172/249 (69.08%), Query Frame = 1 
Query:    1 GGTSFPLFWAEHAENGNYLEPQEISVRHGVCGDPKQRTEEEWNRYSTPNSIWPIQKTLEKGSVMEVTVMMNAYHWGHLEFFLCDAAKLEDPGGVVTQECLNMNPLTRAEGDNDNSPIDPDYSGRYYVDPECHKDETDQGSLTPEDVEDEYYLLHMRYQLPSQLVCEHCILQMVYYTGNTCNHVGYDEFDPPSWPSECAPDKDNWIRSNLKICGEGDKYPEEFYSCSDISITENGE-PNPTP--APSEPI 738
            GG  +PL++ + A+NGNYLE  EI+ RHG+CGDP+Q  +E  N YST N  W +  + + G V+E+ ++MNAYHWGH EFFLC+A +++DP GV TQEC N  PLTRA  D D SPIDP+Y GRYYVDPEC   ET+QGS  PE    + Y + MRY LP  + C+ C+LQM         H+GYDEFDPPSWPS CAP+K +WI  N  ICGE   YPEEF++CSDIS+T +G  P PTP   P+ P+
Sbjct:   83 GGDEYPLYFGDFADNGNYLETDEIAKRHGICGDPEQNADEGSNVYSTANIGWDVLGSFKSGEVLEMDIIMNAYHWGHCEFFLCNADEMDDPDGVPTQECFNRYPLTRAADDGDASPIDPNYPGRYYVDPECRAGETEQGS--PEGAP-KGYNIKMRYVLPD-IECDRCVLQM---------HIGYDEFDPPSWPSTCAPNKSDWIELNRYICGEEGAYPEEFWACSDISLTSDGSAPPPTPYTTPTTPV 318
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BLAST of mRNA_F-serratus_M_contig96.20919.1 vs. uniprot
Match: A0A6H5JFL8_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFL8_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.260e-81
Identity = 130/250 (52.00%), Postives = 169/250 (67.60%), Query Frame = 1 
Query:    1 GGTSFPLFWA----EHAENGNYLEPQEISVRHGVCGDPKQRTEEEWNRYSTPNSIWPIQKTLEKGSVMEVTVMMNAYHWGHLEFFLCDAAKLE-DPGGVVTQECLNMNPLTRAEGDNDNSPIDPDYSGRYYVDPECHKDETDQGSLTPEDVEDEYYLLHMRYQLPSQLVCEHCILQMVYYTGNTCNHVGYDEFDPPSWPSECAPDKDNWIRSNLKICGEGDKYPEEFYSCSDISITENGEPNPTPAPSEP 735
            G   +PL  A    E  +NGN+ E  EIS RHG+CGDPKQ + E  N YS+  S W   +TL++G V+++ V++  Y  GHLEFF+C++A L   P     QEC NMNPLTRAEGD+ NSPIDP Y GRYYV+P CH   T+     P+  +D Y +++M+YQLP  L C+HC+LQMV+YTGNTC HVGYD+F+P SWPS+CAP K  WI ++  +CG    YPEE +SCSDISIT +G    + +P EP
Sbjct:   79 GDGEWPLLAAYNKGEMCDNGNFYERDEISARHGICGDPKQFSLESTNAYSSSLSDWSALETLKEGGVLDIKVVVAEYLGGHLEFFICNSADLRYGPTSKPNQECFNMNPLTRAEGDDVNSPIDPAYPGRYYVNPPCHA--TEHPEALPDGAQDGY-VINMQYQLPEGLTCDHCVLQMVHYTGNTCKHVGYDDFEPESWPSQCAPTKAEWINTDHWMCGMAGAYPEEHWSCSDISITTDGPTEKSSSPVEP 325
[Close]
BLAST of mRNA_F-serratus_M_contig96.20919.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 266 bits (680), Expect = 3.370e-79
Identity = 128/246 (52.03%), Postives = 163/246 (66.26%), Query Frame = 1 
Query:    1 GGTSFPLFWA----EHAENGNYLEPQEISVRHGVCGDPK---QRTEEEWNRYSTPNSIWPIQKTLEKGSVMEVTVMMNAYHWGHLEFFLCDAAKLEDPGGVVTQECLNMNPLTRAEGDNDNSPIDPDYSGRYYVDPECHKDETDQGSLTPEDVEDEY-------YLLHMRYQLPSQLVCEHCILQMVYYTGNTCNHVGYDEFDPPSWPSECAPDKDNWIRSNLKICGEGD-KYPEEFYSCSDISIT 693
            G   +PL W     E A NGNY+EPQ ISVRHGVCGDPK   Q  ++  N YSTPN  WP+ +  ++G  ME+  +M A+H+GHLEFF+CD   L+DP  V TQEC N  PLTR+EGD  NSPIDP+Y GRYY DP C ++ET+Q          +Y       Y++ M Y LP  LVCEHC+LQM YYTG+ C H GY+EF+P SW SECAP+K +WI  ++  CG+ +    EEF++CSDI+IT
Sbjct:   45 GDGWYPLRWVYDKGEMAPNGNYIEPQGISVRHGVCGDPKSGDQGGQDGENTYSTPNKDWPVLQEFKQGQSMEIKAVMKAWHYGHLEFFICDTQDLDDPDDVATQECFNKYPLTRSEGDGVNSPIDPNYPGRYYADPPCRENETEQ----------DYDWRAGGGYVMTMNYDLPENLVCEHCVLQMWYYTGHKCYHPGYEEFNPASWGSECAPNKSDWIDLSIDYCGDNEWNLAEEFWACSDIAIT 280
[Close]
BLAST of mRNA_F-serratus_M_contig96.20919.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 5.170e-79
Identity = 120/237 (50.63%), Postives = 155/237 (65.40%), Query Frame = 1 
Query:    1 GGTSFPLFWAEHAENGNYLEPQEISVRHGVCGDPKQRTEEEWNRYSTPNSIWPIQKTLEKGSVMEVTVMMNAYHWGHLEFFLCDAAKLED-PGGVVTQECLNMNPLTRAEGDNDNSPIDPDYSGRYYVDPECHKDETDQGSLTPEDVEDEYYLLHMRYQLPSQLVCEHCILQMVYYTGNTCNHVGYDEFDPPSWPSECAPDKDNWIRSNLKICGEGDKYPEEFYSCSDISITENGEP 708
            G   +P F  E A+NGNY+E  E++ RHGVCGDP+Q   E  N+Y   NS +P+ +T  +G ++EV ++++ YHWGH+E FLCDA  L D P  VVTQ C N  PL RAE D  N PIDP   GR+ +DP C   ETDQ  L      D   +   R+QLP  + CE C++QM YYTGN+C H GY EF+PPSWPS CAP K +WI   +  CG+GD YPEEF++C+D+SIT +G P
Sbjct:   71 GDQPWPHFNGERAKNGNYIESDEVAQRHGVCGDPEQTAAEGSNKYGQENSNYPVLETYAEGGILEVKIVVSTYHWGHVEMFLCDADDLPDGPDSVVTQSCFNEYPLDRAEDDEFNGPIDPLNRGRFILDPPCRASETDQELLPGAFAGD---VATARFQLPQGVTCERCVVQMAYYTGNSCKHQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITSDGGP 304
[Close]
BLAST of mRNA_F-serratus_M_contig96.20919.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 264 bits (674), Expect = 1.320e-78
Identity = 127/257 (49.42%), Postives = 168/257 (65.37%), Query Frame = 1 
Query:    1 GGTSFPLFWAEHAENGNYLEPQEISVRHGVCGDPKQRTEEEWNRYSTPNSIWPIQKTLEKGSVMEVTVMMNAYHWGHLEFFLCDAAKLEDPGG---VVTQECLNMNPLTRAEGDNDNSPIDPDYSGRYYVDPECHKDETDQGSLT---PEDVEDEYYLLHMRYQLPSQLVCEHCILQMVYYTGNTCNHVGYDEFDPPSWPSECAPDKDNWIRSNLKICGEGDKYPEEFYSCSDISITENGEPNP------TPAPSEP 735
            G   +P F  E AENGNY+E +E++ RHG+CGDP+Q   E+ N+Y   NS +P+ +T  +G ++E  ++++ YHWGH+E FLCDA  L  PGG    VTQ C N +PL R + D+ NSPIDP  +GR+ +DP C   ETDQ  L    P DV         R++LP  L CE C++QMVYYTGN+C H GY EF+P SWPS CAP K +WI   +  CG+GD YPEEF++C+DISIT +G+P P      TPAP+ P
Sbjct:   73 GDKPWPHFNGERAENGNYIESEEVAQRHGICGDPEQTAAEDSNKYGLENSNYPVLETYAEGGILEFKMVVSTYHWGHVEMFLCDADDL--PGGPDSTVTQSCFNEHPLDRVDDDDFNSPIDPSNTGRFILDPPCRASETDQEMLDGAFPGDV------ATARFKLPQGLTCERCVVQMVYYTGNSCKHQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADISITSDGDPAPSPTTVLTPAPTAP 321
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig96.20919.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4D7_ECTSI3.280e-12856.63EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FZR0_ECTSI2.510e-10048.78EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMS9_ECTSI3.690e-9653.76EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
D7FZQ9_ECTSI7.000e-9449.51EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM93_ECTSI1.570e-8350.82EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FRE8_ECTSI7.370e-8254.62EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JFL8_9PHAE1.260e-8152.00CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FU28_ECTSI3.370e-7952.03EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI5.170e-7950.63EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM92_ECTSI1.320e-7849.42EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig96contigF-serratus_M_contig96:543819..549732 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score313.5
Seed ortholog evalue1.2e-82
Seed eggNOG ortholog2880.D7FSZ8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons8
Model size1032
Cds size1032
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig96.20919.1prot_F-serratus_M_contig96.20919.1Fucus serratus malepolypeptideF-serratus_M_contig96 543819..549732 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932727.2965336-CDS-F-serratus_M_contig96:543818..5439261622932727.2965336-CDS-F-serratus_M_contig96:543818..543926Fucus serratus maleCDSF-serratus_M_contig96 543819..543926 +
1690964443.5241668-CDS-F-serratus_M_contig96:543818..5439261690964443.5241668-CDS-F-serratus_M_contig96:543818..543926Fucus serratus maleCDSF-serratus_M_contig96 543819..543926 +
1622932727.311895-CDS-F-serratus_M_contig96:544395..5445121622932727.311895-CDS-F-serratus_M_contig96:544395..544512Fucus serratus maleCDSF-serratus_M_contig96 544396..544512 +
1690964443.5347457-CDS-F-serratus_M_contig96:544395..5445121690964443.5347457-CDS-F-serratus_M_contig96:544395..544512Fucus serratus maleCDSF-serratus_M_contig96 544396..544512 +
1622932727.358455-CDS-F-serratus_M_contig96:547235..5473891622932727.358455-CDS-F-serratus_M_contig96:547235..547389Fucus serratus maleCDSF-serratus_M_contig96 547236..547389 +
1690964443.5436366-CDS-F-serratus_M_contig96:547235..5473891690964443.5436366-CDS-F-serratus_M_contig96:547235..547389Fucus serratus maleCDSF-serratus_M_contig96 547236..547389 +
1622932727.417678-CDS-F-serratus_M_contig96:547592..5477361622932727.417678-CDS-F-serratus_M_contig96:547592..547736Fucus serratus maleCDSF-serratus_M_contig96 547593..547736 +
1690964443.5534487-CDS-F-serratus_M_contig96:547592..5477361690964443.5534487-CDS-F-serratus_M_contig96:547592..547736Fucus serratus maleCDSF-serratus_M_contig96 547593..547736 +
1622932727.43532-CDS-F-serratus_M_contig96:547953..5481271622932727.43532-CDS-F-serratus_M_contig96:547953..548127Fucus serratus maleCDSF-serratus_M_contig96 547954..548127 +
1690964443.5634468-CDS-F-serratus_M_contig96:547953..5481271690964443.5634468-CDS-F-serratus_M_contig96:547953..548127Fucus serratus maleCDSF-serratus_M_contig96 547954..548127 +
1622932727.4558563-CDS-F-serratus_M_contig96:548605..5488041622932727.4558563-CDS-F-serratus_M_contig96:548605..548804Fucus serratus maleCDSF-serratus_M_contig96 548606..548804 +
1690964443.5757113-CDS-F-serratus_M_contig96:548605..5488041690964443.5757113-CDS-F-serratus_M_contig96:548605..548804Fucus serratus maleCDSF-serratus_M_contig96 548606..548804 +
1622932727.4809592-CDS-F-serratus_M_contig96:549181..5492751622932727.4809592-CDS-F-serratus_M_contig96:549181..549275Fucus serratus maleCDSF-serratus_M_contig96 549182..549275 +
1690964443.587449-CDS-F-serratus_M_contig96:549181..5492751690964443.587449-CDS-F-serratus_M_contig96:549181..549275Fucus serratus maleCDSF-serratus_M_contig96 549182..549275 +
1622932727.4943414-CDS-F-serratus_M_contig96:549690..5497321622932727.4943414-CDS-F-serratus_M_contig96:549690..549732Fucus serratus maleCDSF-serratus_M_contig96 549691..549732 +
1690964443.600966-CDS-F-serratus_M_contig96:549690..5497321690964443.600966-CDS-F-serratus_M_contig96:549690..549732Fucus serratus maleCDSF-serratus_M_contig96 549691..549732 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig96.20919.1

>prot_F-serratus_M_contig96.20919.1 ID=prot_F-serratus_M_contig96.20919.1|Name=mRNA_F-serratus_M_contig96.20919.1|organism=Fucus serratus male|type=polypeptide|length=344bp
GGTSFPLFWAEHAENGNYLEPQEISVRHGVCGDPKQRTEEEWNRYSTPNS
IWPIQKTLEKGSVMEVTVMMNAYHWGHLEFFLCDAAKLEDPGGVVTQECL
NMNPLTRAEGDNDNSPIDPDYSGRYYVDPECHKDETDQGSLTPEDVEDEY
YLLHMRYQLPSQLVCEHCILQMVYYTGNTCNHVGYDEFDPPSWPSECAPD
KDNWIRSNLKICGEGDKYPEEFYSCSDISITENGEPNPTPAPSEPISDCL
DPVELFEQCGGEDWQGSECCRDGFECVFESESYSEVSSSRARPDVFDPPT
CSEEWGQCGGSTWEGPTCCWPGTTCVEKKPTYSQCRPDDEDRL*
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mRNA from alignment at F-serratus_M_contig96:543819..549732+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig96.20919.1 ID=mRNA_F-serratus_M_contig96.20919.1|Name=mRNA_F-serratus_M_contig96.20919.1|organism=Fucus serratus male|type=mRNA|length=5914bp|location=Sequence derived from alignment at F-serratus_M_contig96:543819..549732+ (Fucus serratus male)
GGTGGGACCTCATTTCCTCTATTCTGGGCCGAGCATGCGGAGAATGGTAA
CTACCTAGAACCTCAGGAAATTTCCGTTCGCCACGGTGTCTGTGGCGATC
CCAAACAGGTTCGACAACTTGTTCTAAAGTAGGATTTGTGTTGTTTCTTT
CGTAACGGAAAGCGTGGGAACGTGAGTAAGTAAAATTCAACCATTGGTTG
ACGAGTTGTAAGAGTGCTGAACTTGCATCGCGATAAAAATGGTAAGGCGT
GAACCGGGGAGAGATGGGAAGATCCTTTGTGACCACAGGCAGGATGGTAA
TTAGAGGTCCATCGGCTTTAAGTGTAATTAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAGTCGGTTGTACTGTACTATTAATAACAACAACTGATGATGTA
CTCCAACAACTGTACTACAACAAACACCGGTACTGTACTGTACTGTATTA
CTGGGAGAAGAGTGCGTTGAAATTGGATCACAGAAGATTGTGACGCAGAA
AAGAGACTATTTAGGCGACCTTAGACTCCGATTCGCCAAGCTGCACCCGC
TCGATACTCTCTTTGCTTACTGCGCAGCGCACGGAAGAAGAATGGAACCG
ATACAGTACCCCAAACTCCATTTGGCCTATCCAGAAGACGCTCGAGAAGG
GCTCGGTGATGGAAGTAACGGTTATGATGAACGCCTATCATTGGGTAAGA
AGCTAGATCTATGAAGTTAGAGCCATGCCGTGTAGTATATATATGATGTG
ATCAAAAAGGCGATACTCTCAAGTCACTCAAAGAACGCCAACACTTGAGA
TCGCCGGCTTGTAAGTGGGGGTAGGAAATTCCTCATCATCAATCAGAAGA
TCAGATGGTGCCACTTTATTTATTTCCCCGTGTCTGCGTCCTACCCATCC
TTTTTTGTATTTTGTTTATGTTGATATTTCATATTTCTTCAGGCAGTCGC
GTTGTTTGCCTTGTTCTTATATGTCTGCATGCTCGCTGGTTGGAGCTTTG
TAGATGCCCCCCTGATACCTTTCTGTCCAGCAGACCACGTAGTACCGAAT
TGGCAGCCGCGTAGTGCATTATTAGTCTACTGGGTGTGGTTGAGGGTCGA
TCGTTCAATAATAAAGTGAACACAGCACACACCCGCACATCATAGACAAG
AAAGTATGGGTTCATTCCGTAGATGTCAACCCAGAAGATCTATTAATAAT
AGAGTATACAAGAGTTCCGGACGTTGGGGCCTATCGACCCCCCCGTCCTC
AGTTGTGGGAAATGCTTTGGTTGTGATTGGTGATGGTATTATAGAGAGTG
TGAACGTGAAGAACCGTTACCAAGGGGCACGCGTCTCAACACGGAGGGCA
AACCGTGAACCGGAAGATGGTATTCGGTGGAAATTTGTACATGGTCGAGT
AGTTGTGGTCAGATAGTACGGGACAAAATGGTTGGCGTCATCTCCCGCGG
ATGATGTATGAAGTTGTGCGATGCGGGAGGGTGTCGGTTTGTAAGGACGA
CTCCTCGTTGATGATCTCACTAAAAATAATGCACACGCAGACACCTCGAG
TAGACGTTCGCTTTGAACGTTATAGGGGCAACACGACGATGGCTTCACGA
CAAACAGGACGCTACGATGCGTTTCGATAGAAAAGAGAAATATTCCGTCG
ATCCTATTGCCCACAGAAATGGACATGCAGGCACGTGGGGTAGACGTACG
CTGTGAATGGTACAGCGACCCCGGGAACACAAACAGTACGCAACATGTAG
AGTTTTTGTCCCTACAGCCAATGTTCAGATTTTTACTGTGTAGTAGTACC
GGTCGACCCCGGTAGCTCAGTAGGCAGGCACCTCGTAACCTTCTGACACG
TTGGGACGTGAGTTCGATCCCGGCAAACGGGATTTTTCTCACTAAAAACT
AAAAAACCAAACTAAAAATGCCCAACGGGTGGAGAACGATTAATTCGTTA
GTACTCAAAATGAATAAAATTCGACTTCACGGTCGACGAGGGAAAGGAAT
GGCTGAATCCTTCTCGCGACAAAAATCAAGGCACGCACCGCAGAAGGAAG
GTGGATGAAAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTA
CGTCCAACGAACTTGATGTCCAGAATGGATGGGAAGAAAACACAAAAAAA
ACACACAGTAGTAACTAAGTCTGCTTACATGGTGATTAATGTAAGTGTAC
TTTTTCTGAACTTGTTATTTTTAGGAACCCGTGTCATATTTTTTGGCAAG
TGTTGGAACTTTCTCTGGGTCTTTTTATTTTATCTTATTTGCTTTCTGTA
CCTTAGTTTGGGGTAGCCTGTGACCACGGAAATTCGTTTCTTTGCCTTGA
AAGAGAAGGTACTGTTGGATAGAGGTCAGAACGGTGTAATATACGTGGTT
GCCGGTTTTTTATGTGAAGACAACAACAGCAACAACTGCTGCTGCGGACC
TCTGAGCTAATATGCATAACTTGTTCGATGGTGATGCAGGGGTACCTCTG
AAAGATGCAGAACTTTTGTAAAGATAAAGCAAGCTCTCCACATCTGAAGC
TCACGCGTAAGAGCTAACCTCGGTGCGTAACTTGCAGGGGTGGCTCGAGA
GATTAATGCGATCCGGTAGGCGAAGACGGAAGAAAAAACGATTTAATCGT
GTTTTCAGGCTGAATTTCGCCCCAAACGTCTTGCCTTGAGAAGGGGATGG
AAAGAACAATGGTTGAACTCTGCGCTCTGAGCGCTTCAGATCTAAAGATT
AAGGTTGAGGATAATATTACATACCTCTATTAATAGAAAGAAAGCAGAGA
GGGAAGCGAAGGGTGCTCAGTCAGGTCTTACAGTATTAATAAGTGAGAAT
GGTATAAAGAGTGTATCCTGTTTGTCGCGGCTGATCAGAGGTTTTCGTAA
CGAGAATCATTGATCCCTTAATACCTCAACACCTTAACGCCCTATTCTTG
GGAGGACCAGTACGAGTGCCATATAATATGATTATTAATATTACAATTAA
TAGGATGGCAGGGTCGGATTACGAGGTTTTGTGTCTGATCAGAGGTTTTG
TGATGATAGATATTAAGTATATGCGTGGTTATGTGCACACACACGTGTGC
CGCCTTTGTCGCGTCTGGTCGGAGGTTTTCGTCATAAGTATCATTGATCC
CCTCTTGGGAGGATCAATGCGAGTAGCATAGAAGGACTAGGATGATAGGG
TCGGATTGCGCGACTATTAAGTGCAATTTAGTAAATACACATAGACACAC
ACAGCCGGATTGCGCCGTTATTTGCAGTTTCATAAACACACACATGCGTA
CATATTTCCATCAACGCAGGCTATGTTTTACTTGAGGGAACGCACTATAT
CCAATATCCACCCTTTTCTGTTTCCCCTTTCATTTTCTGGATCTTCTTCG
ACGCATTTTTTGGCAAGGGCCACTTGGAGTTCTTCCTCTGCGATGCCGCC
AAACTTGAAGATCCGGGCGGTGTGGTGACTCAGGAATGCCTCAACATGAA
TCCCCTCACTCGCGCTGAAGGCGACAATGATAATAGTCCCATCGACCCTG
ACTACTCCGGTCGCTATTACGGTACGCAACTCCGGTCGCTATTATAACGG
TGTGCGCCATTGAAACGCGTTCTCAATTAGTATTGTACAGAGTCGTAGTC
GTCACTACTGGTACCCGACTCCTCGCGTAATATTAAAGAACACTATAGAT
CACTACTATAGCCCTTCTTGACCAGCGATTTCTCTCATTCCCCCAATTCC
GATCCCACGTCTGGTGCCCCCAAGTCGACCCGGAGTGTCACAAAGACGAG
ACTGACCAAGGAAGCCTCACGCCGGAAGATGTGGAGGACGAGTATTACTT
GCTTCACATGCGTTACCAGCTCCCCAGTCAGCTTGTTTGCGAGCACTGCA
TCCTGCAGATGGTGTACTGTGAGTCCGTCGACTCGGAATACCCTATTAGC
TCCCACTCTCTAAGTAAATATGTACTGCTGCACAGTGGGTTCATCGACTG
CGTCGCGTGTATGGCTTCCATTTCTAGCTAACGATCGAGCCATCTTACCC
TGTCTTCTTAGATGTGACGGCCTGCGACGCACTGTCTTCAAAGCATCCCT
CAACACGTCCAAATGTGTTTCTTAACCAAACCCAGATACGGGCAACACTT
GCAACCACGTTGGCTATGACGAGTTCGATCCACCGTCTTGGCCGTCGGAG
TGCGCCCCAGACAAGGACAACTGGATCAGGTCCAACCTCAAAATCTGCGG
CGAAGGGGACAAATATCCGGAGGAATTCTATTCGTGCTCTGATATTAGTA
TCACCGAGAGTGAGGACCTTAAACCTTAAACCTTAAACCTTAAACCACCT
GTAGCTGCTGCACTGCTTGCACAATGTTGATATCAAGACCAAACAAGGAT
GCGTGTGTCTGGTTCATGTACTTATACGCGCTACGTGGCAAAGCTTGCGC
AACTTCACCAGATCGTCTGTTATATTACACAGGGGAAGTTGAACATAATT
GTGTATGCAACATTTAGAGTCGGATTGGACTTACGCCGGTATCTACCTCT
TATATGCCTGACGGAGAGGCTAAGCTTTTGAAAGTGCTCATACGATCAAT
ATTTGTTGAGTCAAACACTTTAGAAACACATAGATACGTGCCTATATTTT
TGCTTTTTTTGCCTAACAACTCTTTTCCGGCAACACGAGCTATCTCCTTG
AGCCACGCCCATCGGCGATTTTCTCTGATACTGTATCTGGTATTGTCTCG
TTTCCCAACGACGAACACTCCGCATTCGGGCATTCAGACGGAGAGCCTAA
CCCGACGCCCGCGCCCAGCGAGCCCATCTCGGACTGCCTTGATCCCGTGG
AACTATTCGAGCAGTGTGGGGGAGAAGACTGGCAGGGATCGGAGTGCTGC
CGCGACGGATTCGAATGCGTGTTCGAAAGCGAAAGCTACTCGGAAGTGAG
TTCATCCCGTGCTCGGCCCGACGTTTTTGACCCTCCGTGCTCAAGGAGCG
ATCGCTAAAAGTCTCGTCATGAACTTTTCAATCAGGCACACGCATGCGTG
GCAAGAGCGGAGTTGCCGGGCTTCCACCCGCACGCGTGGATCTCTGTCAC
ACTTTAGCTTTCGTCGCCGTGTCTCACCGGTTGGGTTCGTGCTGCTGCCA
CCAAACAATCGTCTTGGCCGAACCATACGCACAGGATGGACAGAAAGAAT
ACGCCCCAACTCCCCCCCCACACACACGCACGTTTTCCTCACTTTATTGT
GTTGTCGTGCGCCTCTTTTTATCTCGATTCGTTCGTTCCAAAAGCATTGT
ATGTTGCTTGTCCCGGTGTGTGTGTGGCTCGCCCCCCGCGCAGTGCGATC
TCGTCGATGGCAGCACGTGTAGCGAGGAATGGGGCCAGTGCGGGGGCTCT
ACTTGGGAAGGCCCGACCTGCTGCTGGCCAGGTACCACTTGCGTCGAGAA
GAAACCGGTGAGTGGGGTGGAATTCATCTCAAGTGTGGAGTGGCACACTG
CTGTATTTCTCTGACAATCACGAATAATACCTCTGGGGAAGTCTCAAGTA
GAAGTCACACTCACAAACACAACACGTACAGGGAATCCAGTGTGGAGTGG
CACACCGCATTTATTTGCCAATCAAGAATAATTCCCCTAGGGAAATAGAA
AGCCGCGCATGCGCACACGCACGTACAGGCACGCTCACACACGTACAGAG
ATGGGCACCCGTGACGCCATTTCACCAGGCCAATTACAACTTATTACCCC
CTTTGTCGTCACATGTTTCTTAACACCCATGTCCGCCACGCATCCTAAGC
TTGCGCACCTATCCCCGTGCTTCTACCCCATGCCGCGTCTTCTCATGACT
CGCCTCCCATCAATTTACTCAGACCTACTCCCAATGCAGGCCAGACGATG
AGGACAGACTATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig96:543819..549732+

>mRNA_F-serratus_M_contig96.20919.1 ID=mRNA_F-serratus_M_contig96.20919.1|Name=mRNA_F-serratus_M_contig96.20919.1|organism=Fucus serratus male|type=CDS|length=2064bp|location=Sequence derived from alignment at F-serratus_M_contig96:543819..549732+ (Fucus serratus male)
GGTGGGACCTCATTTCCTCTATTCTGGGCCGAGCATGCGGAGAATGGTAA
CTACCTAGAACCTCAGGAAATTTCCGTTCGCCACGGTGTCTGTGGCGATC
CCAAACAGGGTGGGACCTCATTTCCTCTATTCTGGGCCGAGCATGCGGAG
AATGGTAACTACCTAGAACCTCAGGAAATTTCCGTTCGCCACGGTGTCTG
TGGCGATCCCAAACAGCGCACGGAAGAAGAATGGAACCGATACAGTACCC
CAAACTCCATTTGGCCTATCCAGAAGACGCTCGAGAAGGGCTCGGTGATG
GAAGTAACGGTTATGATGAACGCCTATCATTGGCGCACGGAAGAAGAATG
GAACCGATACAGTACCCCAAACTCCATTTGGCCTATCCAGAAGACGCTCG
AGAAGGGCTCGGTGATGGAAGTAACGGTTATGATGAACGCCTATCATTGG
GGCCACTTGGAGTTCTTCCTCTGCGATGCCGCCAAACTTGAAGATCCGGG
CGGTGTGGTGACTCAGGAATGCCTCAACATGAATCCCCTCACTCGCGCTG
AAGGCGACAATGATAATAGTCCCATCGACCCTGACTACTCCGGTCGCTAT
TACGGGCCACTTGGAGTTCTTCCTCTGCGATGCCGCCAAACTTGAAGATC
CGGGCGGTGTGGTGACTCAGGAATGCCTCAACATGAATCCCCTCACTCGC
GCTGAAGGCGACAATGATAATAGTCCCATCGACCCTGACTACTCCGGTCG
CTATTACGTCGACCCGGAGTGTCACAAAGACGAGACTGACCAAGGAAGCC
TCACGCCGGAAGATGTGGAGGACGAGTATTACTTGCTTCACATGCGTTAC
CAGCTCCCCAGTCAGCTTGTTTGCGAGCACTGCATCCTGCAGATGGTGTA
CTTCGACCCGGAGTGTCACAAAGACGAGACTGACCAAGGAAGCCTCACGC
CGGAAGATGTGGAGGACGAGTATTACTTGCTTCACATGCGTTACCAGCTC
CCCAGTCAGCTTGTTTGCGAGCACTGCATCCTGCAGATGGTGTACTATAC
GGGCAACACTTGCAACCACGTTGGCTATGACGAGTTCGATCCACCGTCTT
GGCCGTCGGAGTGCGCCCCAGACAAGGACAACTGGATCAGGTCCAACCTC
AAAATCTGCGGCGAAGGGGACAAATATCCGGAGGAATTCTATTCGTGCTC
TGATATTAGTATCACCGAGAATACGGGCAACACTTGCAACCACGTTGGCT
ATGACGAGTTCGATCCACCGTCTTGGCCGTCGGAGTGCGCCCCAGACAAG
GACAACTGGATCAGGTCCAACCTCAAAATCTGCGGCGAAGGGGACAAATA
TCCGGAGGAATTCTATTCGTGCTCTGATATTAGTATCACCGAGAACGGAG
AGCCTAACCCGACGCCCGCGCCCAGCGAGCCCATCTCGGACTGCCTTGAT
CCCGTGGAACTATTCGAGCAGTGTGGGGGAGAAGACTGGCAGGGATCGGA
GTGCTGCCGCGACGGATTCGAATGCGTGTTCGAAAGCGAAAGCTACTCGG
AAGTGAGTTCATCCCGTGCTCGGCCCGACGTTTTTGACCCTCCACGGAGA
GCCTAACCCGACGCCCGCGCCCAGCGAGCCCATCTCGGACTGCCTTGATC
CCGTGGAACTATTCGAGCAGTGTGGGGGAGAAGACTGGCAGGGATCGGAG
TGCTGCCGCGACGGATTCGAATGCGTGTTCGAAAGCGAAAGCTACTCGGA
AGTGAGTTCATCCCGTGCTCGGCCCGACGTTTTTGACCCTCCCACGTGTA
GCGAGGAATGGGGCCAGTGCGGGGGCTCTACTTGGGAAGGCCCGACCTGC
TGCTGGCCAGGTACCACTTGCGTCGAGAAGAAACCGCACGTGTAGCGAGG
AATGGGGCCAGTGCGGGGGCTCTACTTGGGAAGGCCCGACCTGCTGCTGG
CCAGGTACCACTTGCGTCGAGAAGAAACCGACCTACTCCCAATGCAGGCC
AGACGATGAGGACAGACTATGAACCTACTCCCAATGCAGGCCAGACGATG
AGGACAGACTATGA
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