mRNA_F-serratus_M_contig953.20894.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig953.20894.1
Unique NamemRNA_F-serratus_M_contig953.20894.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig953.20894.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.780e-42
Identity = 89/186 (47.85%), Postives = 115/186 (61.83%), Query Frame = 3 
Query:   36 VELKWQFDAASAPYGLVERLISSCHVLGNVKFPACWRYGALFASRQSMRRHGKEIPF----TFLIRYHE--RMLSLRMIGLLSNGRVLAALRYVASAMVILSMEWPGVQWEGWLHCPNHPGTRMYLTKPREARIGGPLVHEQIQDEDSMNCDCQLQPNGVLQLVYQRLGTVVDTRKGHPIEGFEEE 575
            V LKW+FD A  PYGL+ERLI+SCHVLG V+  ACWRYGA+F S       G+ + F      +  Y+E  R+ + ++ G L + RV  A+RYVASAM+ LS EWPGV W GWL C  HP   +Y+    EAR+G PL+     D  +  CDC L+P GVL+L  + LG V+DT K  P EG  +E
Sbjct:  513 VTLKWEFDKAGPPYGLIERLIASCHVLGEVETGACWRYGAVFQSHDMRFVEGRNVRFYKIALSMTSYNESERVFTAKVFGPLDSERVWVAIRYVASAMINLSKEWPGVLWTGWLDCEKHPSQHLYMASSVEARVGDPLLPAAAPD--ARRCDCLLEPGGVLRLAVEELGPVIDTGKD-PFEGLSDE 695
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BLAST of mRNA_F-serratus_M_contig953.20894.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.080e-37
Identity = 82/180 (45.56%), Postives = 108/180 (60.00%), Query Frame = 3 
Query:   21 HDHQEVELKWQFDAASAPYGLVERLISSCHVLGNVKFPACWRYGALFASRQSMRRHGKEIPFTFLIRY------HERMLSLRMIGLLSNGRVLAALRYVASAMVILSMEWPGVQWEGWLHCPNHPGTRMYLTKPREARIGGPLVHEQIQDEDSMNCDCQLQPNGVLQLVYQRLGTVVDTR 542
            H  +EV L W+FD+A  PYGLVER+I+SCH +G V+   CWRYGA+F SR      G +  +TF++RY        R+LS+RM G L + RV AALR+VAS++V +S +WPGV WEGW  C      R Y     +A IG  L+ +         CDC      VL+LV +RLG VVDT+
Sbjct:  658 HSDREVTLMWRFDSAGPPYGLVERVIASCHAVGVVEMGLCWRYGAVFQSRAMATSDGSDRLYTFVVRYDSAVGNERRILSMRMFGPLQDNRVWAALRWVASSVVNISKDWPGVLWEGWPQCARRHRNRTYFATSDKASIGDFLLADAATGATRRGCDCLAVEGTVLRLVLERLGKVVDTQ 837
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig953.20894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE1.780e-4247.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW02_9PHAE1.080e-3745.56Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig953contigF-serratus_M_contig953:22961..25076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue2.9e-18
Seed eggNOG ortholog2880.D7FVX5
Preferred nameSLITRK2
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs2CMPC@1,2QR6C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1601
Cds size492
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig953.20894.1prot_F-serratus_M_contig953.20894.1Fucus serratus malepolypeptideF-serratus_M_contig953 23137..24143 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932723.1461055-UTR-F-serratus_M_contig953:22960..231361622932723.1461055-UTR-F-serratus_M_contig953:22960..23136Fucus serratus maleUTRF-serratus_M_contig953 22961..23136 +
1690964441.2235749-UTR-F-serratus_M_contig953:22960..231361690964441.2235749-UTR-F-serratus_M_contig953:22960..23136Fucus serratus maleUTRF-serratus_M_contig953 22961..23136 +
1622932723.2502913-UTR-F-serratus_M_contig953:24143..250761622932723.2502913-UTR-F-serratus_M_contig953:24143..25076Fucus serratus maleUTRF-serratus_M_contig953 24144..25076 +
1690964441.281793-UTR-F-serratus_M_contig953:24143..250761690964441.281793-UTR-F-serratus_M_contig953:24143..25076Fucus serratus maleUTRF-serratus_M_contig953 24144..25076 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932723.188164-CDS-F-serratus_M_contig953:23136..233701622932723.188164-CDS-F-serratus_M_contig953:23136..23370Fucus serratus maleCDSF-serratus_M_contig953 23137..23370 +
1690964441.2417989-CDS-F-serratus_M_contig953:23136..233701690964441.2417989-CDS-F-serratus_M_contig953:23136..23370Fucus serratus maleCDSF-serratus_M_contig953 23137..23370 +
1622932723.212476-CDS-F-serratus_M_contig953:23566..237021622932723.212476-CDS-F-serratus_M_contig953:23566..23702Fucus serratus maleCDSF-serratus_M_contig953 23567..23702 +
1690964441.2550957-CDS-F-serratus_M_contig953:23566..237021690964441.2550957-CDS-F-serratus_M_contig953:23566..23702Fucus serratus maleCDSF-serratus_M_contig953 23567..23702 +
1622932723.2309668-CDS-F-serratus_M_contig953:24021..241431622932723.2309668-CDS-F-serratus_M_contig953:24021..24143Fucus serratus maleCDSF-serratus_M_contig953 24022..24143 +
1690964441.2724445-CDS-F-serratus_M_contig953:24021..241431690964441.2724445-CDS-F-serratus_M_contig953:24021..24143Fucus serratus maleCDSF-serratus_M_contig953 24022..24143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig953.20894.1

>prot_F-serratus_M_contig953.20894.1 ID=prot_F-serratus_M_contig953.20894.1|Name=mRNA_F-serratus_M_contig953.20894.1|organism=Fucus serratus male|type=polypeptide|length=164bp
MRRHGKEIPFTFLIRYHERMLSLRMIGLLSNGRVLAALRYVASAMVILSM
EWPGVQWEGWLHCPNHPGTRMYLTKPREARIGGPLVHEQIQDEDSMNCDC
QLQPNGVLQLVYQRLGTVVDTRKGHPIEGFEEETILQRIQRSLNAVAGFS
MFGGRGPSKRREH*
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mRNA from alignment at F-serratus_M_contig953:22961..25076+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig953.20894.1 ID=mRNA_F-serratus_M_contig953.20894.1|Name=mRNA_F-serratus_M_contig953.20894.1|organism=Fucus serratus male|type=mRNA|length=2116bp|location=Sequence derived from alignment at F-serratus_M_contig953:22961..25076+ (Fucus serratus male)
CTGCTATCGGGGAGGCACTTCACGACCATCAGGAGGTGGAACTCAAATGG
CAGTTTGACGCTGCGAGTGCTCCGTACGGGTTGGTGGAGCGACTGATATC
TTCGTGCCATGTCCTTGGAAACGTAAAGTTTCCTGCGTGCTGGAGGTACG
GGGCGTTGTTCGCGAGTCGTCAATCGATGCGGAGGCATGGCAAGGAGATC
CCATTTACGTTCCTCATCCGCTACCACGAGCGCATGCTGTCCTTGAGGAT
GATAGGTCTTCTCTCAAATGGCCGAGTGTTGGCTGCACTACGTTACGTGG
CATCCGCTATGGTTATTCTTTCCATGGAATGGCCCGGAGTACAATGGGAG
GGCTGGCTTCACTGCCCGAACCATCCGGGTACCCGCATGTACTTGACGAA
ACCACGCGAGGTACGATTAACATTCTACATTTCCTTAAACGAGGTATGAT
TTGCTTTGATTCCTATACAGGTGTTACTTAAGTTGAGTGAGCCCCTCGTA
CTTTCTCGACGTTATCGGAGGAGATTCTCTATAGAGATACACTTATTGTA
GACTGGTTGTATCGCTCAAGATGAGATGCGATGTTTTATACGTTTGGATC
AAATAGGCAAGAATTGGGGGCCCGCTGGTGCACGAGCAAATCCAAGATGA
GGATAGCATGAATTGTGACTGCCAACTACAGCCTAATGGAGTGCTCCAGC
TAGTTTACCAACGTCTTGGCACGGTAGTCGACACGAGAAAAGGTGCGGAT
GTTGACGCTACTTATTTGTGGTATATTTTCTGTCATCTTGCATCGCCCCT
ACATATTATGATATTACGTAGTTGCTTCACAGTTGGAGACGGGCATTTCC
CTCAAGATGTTTTCGTTTTTTAATACAGAGTCGTGCCTTATTTTTGTTTT
CGTGCGAAATGATTAACACTTACAATCCCGCTGAGAGCTTACATGGATAA
ACATTGTATTAAGAGTTTTCTAAGCGGAACGTATGTCAAGTACGACCGAT
TATATAGCACGAAAGTGTACCTTGTACCAACTAATTGTTGCGTTCCAACT
GTTCTTCACAGGTCATCCGATCGAGGGGTTCGAGGAAGAAACCATCCTCC
AGAGGATCCAGAGGAGCCTCAATGCTGTCGCGGGGTTTTCAATGTTTGGC
GGCCGAGGGCCTAGTAAACGGCGGGAGCACTAGGAACGCTGGCCGCGACC
CTTTCCTGTTCAGCAGCCGTCGCGGGCATCGTCGAAGAGAAGGACATTCT
TTGGTGGCGGCTTTGGTTGTCTCAGTGCTCGCCCAACGTCACATGAACCG
GATTACGCAAAGTTGTTCCGATGATCATGTTGTTTAGCCTAGGGCGCTTG
CCTTGAGATTGTTTCAAAAAGCTTCCGTCGCGGTGCCATAAAAGAGGGGT
TGAATCTAACGACTCAAATTATTTTGCTAGTGAACTGAATTCTGGTCCAG
GCAAGACCTTGTACTGCGTCTGAACTCTGAAACGCTCACAGTTTACTTAC
ATAATGCGTCAGGTTGGGCACGTCTTAACTTTTTCTTGCGCGATTTTACA
GAAATACTAGGGGTTGGAACCAGGAATATATTTTACAACGTGTACATGCG
CAACGTGGCTCGTTGTCTTGCGGAGCAGCACTGCAAGAGTATGTTGTATT
TTCCCGGTGGAGATTTATGTGCTATTTAAATGCTTTTCTTCCGAAAGTTT
CTGTACATCCTGGCTTGCGTCGTCTAGCATACGTTGCGTCCAGTTTATCG
TCGCTCTTTCGGAGAGTTCTATATTTCCCCCTTCAGGCACACCGTCAGTG
TTGACCTCGTTTGGCGTAGTGTGTTCGATTATCTTTTAGAATATTCAGTC
AGTCTGTGTCATCAATTTGCCTACTTGTTTCCGCTGTTGTTCGACTTTCG
CAATTTTTTGCCCGGGGTTTTTCCTGTGAAGAAGCTTGATCGATGTGCCC
GTCCTTCTGCTTTGATTTGGGGGAAGTTTCGTAGCTGTATAAGTTAGTAC
GGTTGTTGGCTCAGTAAAAAGGCTGGTTTGCCACAGCACGCCCAAATTAA
TTTAGTTCGGGTCGGAGCACTAAACAGCGCATCACACGCCTGGAATAGCG
AGCAGCCAGTACATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig953:22961..25076+

>mRNA_F-serratus_M_contig953.20894.1 ID=mRNA_F-serratus_M_contig953.20894.1|Name=mRNA_F-serratus_M_contig953.20894.1|organism=Fucus serratus male|type=CDS|length=984bp|location=Sequence derived from alignment at F-serratus_M_contig953:22961..25076+ (Fucus serratus male)
ATGCGGAGGCATGGCAAGGAGATCCCATTTACGTTCCTCATCCGCTACCA
CGAGCGCATGCTGTCCTTGAGGATGATAGGTCTTCTCTCAAATGGCCGAG
TGTTGGCTGCACTACGTTACGTGGCATCCGCTATGGTTATTCTTTCCATG
GAATGGCCCGGAGTACAATGGGAGGGCTGGCTTCACTGCCCGAACCATCC
GGGTACCCGCATGTACTTGACGAAACCACGCGAGATGCGGAGGCATGGCA
AGGAGATCCCATTTACGTTCCTCATCCGCTACCACGAGCGCATGCTGTCC
TTGAGGATGATAGGTCTTCTCTCAAATGGCCGAGTGTTGGCTGCACTACG
TTACGTGGCATCCGCTATGGTTATTCTTTCCATGGAATGGCCCGGAGTAC
AATGGGAGGGCTGGCTTCACTGCCCGAACCATCCGGGTACCCGCATGTAC
TTGACGAAACCACGCGAGGCAAGAATTGGGGGCCCGCTGGTGCACGAGCA
AATCCAAGATGAGGATAGCATGAATTGTGACTGCCAACTACAGCCTAATG
GAGTGCTCCAGCTAGTTTACCAACGTCTTGGCACGGTAGTCGACACGAGA
AAAGGCAAGAATTGGGGGCCCGCTGGTGCACGAGCAAATCCAAGATGAGG
ATAGCATGAATTGTGACTGCCAACTACAGCCTAATGGAGTGCTCCAGCTA
GTTTACCAACGTCTTGGCACGGTAGTCGACACGAGAAAAGGTCATCCGAT
CGAGGGGTTCGAGGAAGAAACCATCCTCCAGAGGATCCAGAGGAGCCTCA
ATGCTGTCGCGGGGTTTTCAATGTTTGGCGGCCGAGGGCCTAGTAAACGG
CGGGAGCACTAGGTCATCCGATCGAGGGGTTCGAGGAAGAAACCATCCTC
CAGAGGATCCAGAGGAGCCTCAATGCTGTCGCGGGGTTTTCAATGTTTGG
CGGCCGAGGGCCTAGTAAACGGCGGGAGCACTAG
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