mRNA_F-serratus_M_contig95.20858.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig95.20858.1
Unique NamemRNA_F-serratus_M_contig95.20858.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: D7FVE6_ECTSI (Voltage Gated Calcium/Sodium Channel subunit alpha n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE6_ECTSI)

HSP 1 Score: 167 bits (424), Expect = 2.000e-45
Identity = 98/148 (66.22%), Postives = 117/148 (79.05%), Query Frame = 1
Query:    1 TDSSGGLQGXXXXXXXXXXXXXXVINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAY------GVDFASQCAVINSDWPESAACCPDW 426
            T+ SG L+ XXXXXXXXXXXXXX+INRAPGLK+VLNALFAAIPDVLNVAAVCFM F+IFAILGV YFKGI+MSCQG+ FDALPE++  +++ PT+W  MS  Q++WFGP SNVS A+      G   AS C  IN+ WP+S  CC +W
Sbjct:  985 TNDSGNLEXXXXXXXXXXXXXXXMINRAPGLKIVLNALFAAIPDVLNVAAVCFMFFIIFAILGVNYFKGILMSCQGEEFDALPESIALFIQEPTSWDAMSADQQSWFGPLSNVSAAFSMNGTGGFTTASACGSINAGWPDSGGCCTEW 1132          
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A6H5JIB7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIB7_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 9.290e-45
Identity = 97/148 (65.54%), Postives = 117/148 (79.05%), Query Frame = 1
Query:    1 TDSSGGLQGXXXXXXXXXXXXXXVINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYGVD------FASQCAVINSDWPESAACCPDW 426
            T+ SG L  XXXXXXXXXXXXXX+INRAPGLK+VLNALFAAIPDVLNVAAVCFM F+IFAILGV YFKGI+MSCQG+ FDALPE+V  ++E PT+W  MS  Q++WFGP SN+S A+ ++       AS C  I++ WP+S  CC +W
Sbjct:  487 TNDSGNLXXXXXXXXXXXXXXXXMINRAPGLKIVLNALFAAIPDVLNVAAVCFMFFIIFAILGVNYFKGILMSCQGEEFDALPESVALFIEEPTSWDAMSADQQSWFGPLSNISAAFSINGTGGFTTASACGSISAGWPDSGGCCTEW 634          
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: D8LI93_ECTSI (Similar to sodium channel, voltage-gated, type IX, alpha isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI93_ECTSI)

HSP 1 Score: 142 bits (358), Expect = 1.520e-36
Identity = 92/151 (60.93%), Postives = 108/151 (71.52%), Query Frame = 1
Query:   16 GLQGXXXXXXXXXXXXXXVINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYGVD-FASQ------------CAVINSD-WPESAACCPDW 426
            GL GXXXXXXXXXXXXXX++ R PGLK+VL AL  ++  V NVAAVCF+ ++IFAIL V YFKG++MSCQGDAFDALP  VVS++E P  WSEMS GQR WFGP SNVSEA+  D F+S             C VI    WP++AACC  W
Sbjct:  728 GLSGXXXXXXXXXXXXXXIVKRFPGLKIVLEALIGSVQGVFNVAAVCFLFYIIFAILCVNYFKGLLMSCQGDAFDALPGEVVSFLEDPLPWSEMSSGQREWFGPLSNVSEAFSGDGFSSSIGGNLSTSRVEYCDVITGGLWPDAAACCSAW 878          
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A6H5KPD7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPD7_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 9.810e-36
Identity = 74/133 (55.64%), Postives = 90/133 (67.67%), Query Frame = 1
Query:   70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYGVD-FASQ------------CAVINSD-WPESAACCPDW 426
            ++ R PGLKLVL AL  ++  V NVAAVCF+ ++IFAIL V YFKG++MSCQGDAFDALP  VVS++E P  WS+MS GQR WFGP SNVSEA+  D F+S             C VI    WP++A CC  W
Sbjct: 1225 IVKRFPGLKLVLEALIGSVQGVFNVAAVCFLFYIIFAILCVNYFKGLLMSCQGDAFDALPGEVVSFLEDPLPWSDMSSGQREWFGPLSNVSEAFSGDGFSSSIGGNLSTSGVEYCDVITGGLWPDAAGCCSAW 1357          
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A421FNC7_9STRA (Uncharacterized protein n=4 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421FNC7_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 3.300e-21
Identity = 53/112 (47.32%), Postives = 72/112 (64.29%), Query Frame = 1
Query:   70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYG-VDFASQ--CAVINSDW 396
            +I+R PGLKLV+NALF AIP+VLNV  VC + FLIF+I+ V Y KG   +C GD FDAL +A V ++ SPT W+ ++  QR+WF  +S    +   +   SQ  C    +DW
Sbjct:  273 MISRRPGLKLVVNALFEAIPEVLNVLFVCMLFFLIFSIVAVNYLKGTFNACSGDVFDALSDAQVDFLVSPTKWATLNDFQRSWFANTSCAGFSNDTISMTSQYVCGCWGADW 384          
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A662YH95_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YH95_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 7.600e-20
Identity = 52/112 (46.43%), Postives = 69/112 (61.61%), Query Frame = 1
Query:   70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYGVD-FASQ--CAVINSDW 396
            +I+R PGLKLV+NALF AIP VLNV  +C ++FLIF+I+ V Y KG    C GD FDAL     +++ +PTAW  +S  QR+WF   +   E +  D   SQ  C    +DW
Sbjct:  946 MISRRPGLKLVVNALFEAIPQVLNVLFLCMLLFLIFSIIAVNYLKGTFYLCSGDVFDALSPEQETFLVAPTAWDSLSEMQRSWFA--NTTCEGFPTDSLTSQYVCGCWQADW 1055          
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: K3WQ22_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQ22_GLOUD)

HSP 1 Score: 94.4 bits (233), Expect = 9.530e-20
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 1
Query:   70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPSSNVSEAYGVDFASQCAVINS 390
            +INR PGLKLV+++L A+IP +LNV  VC +VF IF+IL V   KG + SCQGD FDAL EA +  +  P  WS ++ G++ WF  SS +  AY  DF+S    + S
Sbjct:  146 MINRNPGLKLVVSSLIASIPQILNVIVVCLLVFTIFSILAVNNLKGKLYSCQGDVFDALSEAQLGLVAYPRLWSNLTDGEQTWFNASSAI--AY-KDFSSTIDQVTS 249          
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A0P1B727_PLAHL (Voltage-gated ion channel superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B727_PLAHL)

HSP 1 Score: 93.6 bits (231), Expect = 1.930e-19
Identity = 51/114 (44.74%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWFGPS---SNVSEAYGVDFASQ--CAVINSDW 396
            +I+R PGLKLV+NALF AIP+V+NV  VC + FLIF+I+ V Y KG   +C GD FDAL EA +S++ +P AW   S  +R+WF  +   +      G D  S+  C    ++W
Sbjct: 1039 MISRRPGLKLVVNALFEAIPEVINVLFVCMLFFLIFSIVAVNYLKGTFNACSGDVFDALSEAQLSFLVTPKAWKVSSDLERSWFHGTDCQATFPLTIGADLTSEYVCKCWGANW 1152          
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: W2QUR8_PHYPN (Uncharacterized protein n=12 Tax=Phytophthora TaxID=4783 RepID=W2QUR8_PHYPN)

HSP 1 Score: 93.2 bits (230), Expect = 2.630e-19
Identity = 52/114 (45.61%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWF-GPSSNVS--EAYGVDFASQ--CAVINSDW 396
            +I+R PGLKLV+NALF AIP+V+NV  VC + FLIF+I+ V Y KG   +C GD F+A  +A +S++ SP AW + S  QR+WF G     S     G D  S+  C    ++W
Sbjct: 1041 MISRRPGLKLVVNALFEAIPEVINVLFVCMLFFLIFSIVAVNYLKGTFSACSGDVFNAFSDAQLSFLVSPIAWKDSSALQRSWFVGTPCETSFRTTTGSDLTSEYVCECWGAEW 1154          
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Match: A0A6A3MSW9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3MSW9_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 3.520e-19
Identity = 46/84 (54.76%), Postives = 59/84 (70.24%), Query Frame = 1
Query:   70 VINRAPGLKLVLNALFAAIPDVLNVAAVCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMSPGQRAWF 321
            +INR PGLKLV+NALF +IP+V+NV  VC + FLIF+I+ V Y KG   SC GD F  L  A V+++ +PT WS  S  QR+WF
Sbjct:  579 MINRRPGLKLVVNALFESIPEVINVLFVCMLFFLIFSIVAVNYLKGTFSSCSGDVFSTLSGAQVNFLVAPTTWSASSELQRSWF 662          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig95.20858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FVE6_ECTSI2.000e-4566.22Voltage Gated Calcium/Sodium Channel subunit alpha... [more]
A0A6H5JIB7_9PHAE9.290e-4565.54Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI93_ECTSI1.520e-3660.93Similar to sodium channel, voltage-gated, type IX,... [more]
A0A6H5KPD7_9PHAE9.810e-3655.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A421FNC7_9STRA3.300e-2147.32Uncharacterized protein n=4 Tax=Phytophthora kerno... [more]
A0A662YH95_9STRA7.600e-2046.43Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
K3WQ22_GLOUD9.530e-2048.60Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0P1B727_PLAHL1.930e-1944.74Voltage-gated ion channel superfamily n=1 Tax=Plas... [more]
W2QUR8_PHYPN2.630e-1945.61Uncharacterized protein n=12 Tax=Phytophthora TaxI... [more]
A0A6A3MSW9_9STRA3.520e-1954.76Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig95contigF-serratus_M_contig95:741591..742555 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score167.5
Seed ortholog evalue4.4e-39
Seed eggNOG ortholog2880.D7FVE6
KEGG koko:K04851,ko:K04857
KEGG TC1.A.1.11.1,1.A.1.11.2,1.A.1.11.20,1.A.1.11.21
KEGG Pathwayko04010,ko04020,ko04022,ko04024,ko04218,ko04260,ko04261,ko04270,ko04530,ko04713,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04911,ko04912,ko04921,ko04924,ko04925,ko04927,ko04930,ko04934,ko04973,ko05010,ko05031,ko05410,ko05412,ko05414,map04010,map04020,map04022,map04024,map04218,map04260,map04261,map04270,map04530,map04713,map04723,map04724,map04725,map04726,map04727,map04728,map04911,map04912,map04921,map04924,map04925,map04927,map04930,map04934,map04973,map05010,map05031,map05410,map05412,map05414
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.membrane depolarization during action potential
EggNOG OGsKOG2301@1,KOG2301@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04040
Exons2
Model size428
Cds size426
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932715.978154-CDS-F-serratus_M_contig95:741592..7419501622932715.978154-CDS-F-serratus_M_contig95:741592..741950Fucus serratus maleCDSF-serratus_M_contig95 741593..741950 -
1690964437.6805868-CDS-F-serratus_M_contig95:741592..7419501690964437.6805868-CDS-F-serratus_M_contig95:741592..741950Fucus serratus maleCDSF-serratus_M_contig95 741593..741950 -
1622932715.9976625-CDS-F-serratus_M_contig95:742487..7425551622932715.9976625-CDS-F-serratus_M_contig95:742487..742555Fucus serratus maleCDSF-serratus_M_contig95 742488..742555 -
1690964437.6976078-CDS-F-serratus_M_contig95:742487..7425551690964437.6976078-CDS-F-serratus_M_contig95:742487..742555Fucus serratus maleCDSF-serratus_M_contig95 742488..742555 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig95.20858.1prot_F-serratus_M_contig95.20858.1Fucus serratus malepolypeptideF-serratus_M_contig95 741593..742555 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig95.20858.1

>prot_F-serratus_M_contig95.20858.1 ID=prot_F-serratus_M_contig95.20858.1|Name=mRNA_F-serratus_M_contig95.20858.1|organism=Fucus serratus male|type=polypeptide|length=142bp
TDSSGGLQGLKSLRALRALRPLRVINRAPGLKLVLNALFAAIPDVLNVAA
VCFMVFLIFAILGVTYFKGIIMSCQGDAFDALPEAVVSYMESPTAWSEMS
PGQRAWFGPSSNVSEAYGVDFASQCAVINSDWPESAACCPDW
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mRNA from alignment at F-serratus_M_contig95:741591..742555-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig95.20858.1 ID=mRNA_F-serratus_M_contig95.20858.1|Name=mRNA_F-serratus_M_contig95.20858.1|organism=Fucus serratus male|type=mRNA|length=965bp|location=Sequence derived from alignment at F-serratus_M_contig95:741591..742555- (Fucus serratus male)
ACCGACTCATCCGGAGGTCTCCAGGGTCTCAAGTCGCTCCGCGCGTTGCG GGCGCTGCGGCCGCTGAGGTATATGTTTTGGTTCCCACGTGTACGTTTGT AGGAAGAAGGGGGAAATGGTAAACAGTATTCGCGAGATGAAAGTCGGGGA GTCGTTTGATGACGCGGCGTAACCAGCGAATATTGCGCTTCGTTATGCAT ATTGCGCTTCGTATGCTCCGGCTCGCGTGCTTGCATGCAAACAGCTCTTT GGGTTGGCCGCGAAGGATTGGATGGGAAGCGCTTCGTACGATGATACGGA TGGCGGAGTGTCGCTCATAGCGAACCCCCGGCGCAATCACGCTTCTTTCA CTTTTCTTTCCTTTTCCCCCTTGCCATCCACACTGGGCGGACGACCAATG TCTTGTCGCGGGCCGCCTTCCACTGAAAAGTATTCGCGGACTGCAAGTGC GTCGAGAGTTAGCGAGCCGGAATGGTTGGCTTGTGTCTGAAGACGTAAGC GATTGATTTCAGCAGTGAATTGACCACCGTCTGGGACCATGACTTTGGCC CGCACGGAGTTATATACTTGACCTTTGTTATCCTCTCTCGCGTGTTTGTT GTTAGGGTCATCAATCGTGCACCAGGACTGAAACTGGTGCTAAACGCCCT CTTCGCGGCCATTCCGGACGTGCTCAACGTCGCCGCGGTGTGCTTCATGG TCTTCCTCATCTTTGCTATCCTCGGCGTTACCTACTTCAAGGGGATCATC ATGTCCTGCCAGGGGGATGCATTCGACGCCCTTCCTGAGGCCGTCGTTTC TTACATGGAGTCCCCAACCGCGTGGTCGGAAATGTCGCCCGGGCAGCGGG CATGGTTTGGTCCCTCGAGCAACGTCTCCGAGGCGTATGGTGTCGACTTC GCCTCGCAGTGTGCGGTGATCAACAGCGACTGGCCGGAATCCGCTGCGTG TTGTCCCGATTGGCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig95:741591..742555-

>mRNA_F-serratus_M_contig95.20858.1 ID=mRNA_F-serratus_M_contig95.20858.1|Name=mRNA_F-serratus_M_contig95.20858.1|organism=Fucus serratus male|type=CDS|length=852bp|location=Sequence derived from alignment at F-serratus_M_contig95:741591..742555- (Fucus serratus male)
ACCGACTCATCCGGAGGTCTCCAGGGTCTCAAGTCGCTCCGCGCGTTGCG
GGCGCTGCGGCCGCTGAGACCGACTCATCCGGAGGTCTCCAGGGTCTCAA
GTCGCTCCGCGCGTTGCGGGCGCTGCGGCCGCTGAGGGTCATCAATCGTG
CACCAGGACTGAAACTGGTGCTAAACGCCCTCTTCGCGGCCATTCCGGAC
GTGCTCAACGTCGCCGCGGTGTGCTTCATGGTCTTCCTCATCTTTGCTAT
CCTCGGCGTTACCTACTTCAAGGGGATCATCATGTCCTGCCAGGGGGATG
CATTCGACGCCCTTCCTGAGGCCGTCGTTTCTTACATGGAGTCCCCAACC
GCGTGGTCGGAAATGTCGCCCGGGCAGCGGGCATGGTTTGGTCCCTCGAG
CAACGTCTCCGAGGCGTATGGTGTCGACTTCGCCTCGCAGTGTGCGGTGA
TCAACAGCGACTGGCCGGAATCCGCTGCGTGTTGTCCCGATTGGGGTCAT
CAATCGTGCACCAGGACTGAAACTGGTGCTAAACGCCCTCTTCGCGGCCA
TTCCGGACGTGCTCAACGTCGCCGCGGTGTGCTTCATGGTCTTCCTCATC
TTTGCTATCCTCGGCGTTACCTACTTCAAGGGGATCATCATGTCCTGCCA
GGGGGATGCATTCGACGCCCTTCCTGAGGCCGTCGTTTCTTACATGGAGT
CCCCAACCGCGTGGTCGGAAATGTCGCCCGGGCAGCGGGCATGGTTTGGT
CCCTCGAGCAACGTCTCCGAGGCGTATGGTGTCGACTTCGCCTCGCAGTG
TGCGGTGATCAACAGCGACTGGCCGGAATCCGCTGCGTGTTGTCCCGATT
GG
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