mRNA_F-serratus_M_contig95.20844.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig95.20844.1
Unique NamemRNA_F-serratus_M_contig95.20844.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig95.20844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig95contigF-serratus_M_contig95:468815..469152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size193
Cds size147
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig95.20844.1prot_F-serratus_M_contig95.20844.1Fucus serratus malepolypeptideF-serratus_M_contig95 468815..469107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932708.269612-CDS-F-serratus_M_contig95:468814..4689261622932708.269612-CDS-F-serratus_M_contig95:468814..468926Fucus serratus maleCDSF-serratus_M_contig95 468815..468926 +
1690964433.5687642-CDS-F-serratus_M_contig95:468814..4689261690964433.5687642-CDS-F-serratus_M_contig95:468814..468926Fucus serratus maleCDSF-serratus_M_contig95 468815..468926 +
1622932708.2864413-CDS-F-serratus_M_contig95:469072..4691071622932708.2864413-CDS-F-serratus_M_contig95:469072..469107Fucus serratus maleCDSF-serratus_M_contig95 469073..469107 +
1690964433.5804718-CDS-F-serratus_M_contig95:469072..4691071690964433.5804718-CDS-F-serratus_M_contig95:469072..469107Fucus serratus maleCDSF-serratus_M_contig95 469073..469107 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932708.29883-UTR-F-serratus_M_contig95:469107..4691521622932708.29883-UTR-F-serratus_M_contig95:469107..469152Fucus serratus maleUTRF-serratus_M_contig95 469108..469152 +
1690964433.5908275-UTR-F-serratus_M_contig95:469107..4691521690964433.5908275-UTR-F-serratus_M_contig95:469107..469152Fucus serratus maleUTRF-serratus_M_contig95 469108..469152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig95.20844.1

>prot_F-serratus_M_contig95.20844.1 ID=prot_F-serratus_M_contig95.20844.1|Name=mRNA_F-serratus_M_contig95.20844.1|organism=Fucus serratus male|type=polypeptide|length=49bp
PAFTLEWNADVQQIEEGKAPFEPIYRRRSRISSRTGKRTTTTVTRGRR*
back to top

mRNA from alignment at F-serratus_M_contig95:468815..469152+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig95.20844.1 ID=mRNA_F-serratus_M_contig95.20844.1|Name=mRNA_F-serratus_M_contig95.20844.1|organism=Fucus serratus male|type=mRNA|length=338bp|location=Sequence derived from alignment at F-serratus_M_contig95:468815..469152+ (Fucus serratus male)
CCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGAAGAGGG
CAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTCGCATCTCGAGTC
GAACTGGAAAACGTGAGTGACCTAAGCACTTTCATTTGTTTTGTCGCGTC
CTGCTGGTCAACCTTTTGTGTCGCGCGTCCGGACGAAGTACGTGTATTGT
CAGCGGACACGTGTTTCACCTGTACTCCTTTCGGCGGCGCTGTTATTTTT
TTTGCAAGGCACAACTACAACCGTAACGAGAGGGAGACGCTGAGCAGAGT
GCCGAACATACTTCGCCCGCTCCGTGAACCTGGAGTTA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig95:468815..469152+

>mRNA_F-serratus_M_contig95.20844.1 ID=mRNA_F-serratus_M_contig95.20844.1|Name=mRNA_F-serratus_M_contig95.20844.1|organism=Fucus serratus male|type=CDS|length=294bp|location=Sequence derived from alignment at F-serratus_M_contig95:468815..469152+ (Fucus serratus male)
CCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCAGATAGAAGAGGG
CAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTCGCATCTCGAGTC
GAACTGGAAAACCCTGCCTTCACCCTTGAGTGGAACGCCGACGTGCAGCA
GATAGAAGAGGGCAAGGCGCCTTTCGAACCTATTTACAGGAGACGCAGTC
GCATCTCGAGTCGAACTGGAAAACGCACAACTACAACCGTAACGAGAGGG
AGACGCTGAGCACAACTACAACCGTAACGAGAGGGAGACGCTGA
back to top