mRNA_F-serratus_M_contig943.20796.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig943.20796.1
Unique NamemRNA_F-serratus_M_contig943.20796.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig943.20796.1 vs. uniprot
Match: D8LFQ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFQ8_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.060e-13
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 2 
Query:  395 IRTLVMTSLLAHIMSSFFVRGNAEPWSTEIPSS---ASSPFLYYVDVFLGESPEPRTLGIRNGQTVIQAAKRFCLENGFDNNLQAAIIPQLAKVLQDGIAASIEGNVSTIYDAALP 733
            +R LV  SL++ +  ++ + GN++ W ++  ++   ASS FL+ VDV L ES     LGIR+GQTV +AA  FC E G D  +Q+A++PQL KVL+DGI   +        +A++P
Sbjct:    4 LRVLV-ASLVSCLTITYIIGGNSQTWPSDAAAATAIASSDFLFSVDVVLDESAVAVPLGIRDGQTVAEAALGFCHEQGLDGAMQSALMPQLMKVLEDGITEVVGPPFPVGDEASIP 118
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig943.20796.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LFQ8_ECTSI1.060e-1340.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig943contigF-serratus_M_contig943:168515..171652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size913
Cds size528
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig943.20796.1prot_F-serratus_M_contig943.20796.1Fucus serratus malepolypeptideF-serratus_M_contig943 168900..171652 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932700.7452297-UTR-F-serratus_M_contig943:168514..1688991622932700.7452297-UTR-F-serratus_M_contig943:168514..168899Fucus serratus maleUTRF-serratus_M_contig943 168515..168899 +
1690964429.9668891-UTR-F-serratus_M_contig943:168514..1688991690964429.9668891-UTR-F-serratus_M_contig943:168514..168899Fucus serratus maleUTRF-serratus_M_contig943 168515..168899 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932700.7622976-CDS-F-serratus_M_contig943:168899..1691031622932700.7622976-CDS-F-serratus_M_contig943:168899..169103Fucus serratus maleCDSF-serratus_M_contig943 168900..169103 +
1690964429.9772549-CDS-F-serratus_M_contig943:168899..1691031690964429.9772549-CDS-F-serratus_M_contig943:168899..169103Fucus serratus maleCDSF-serratus_M_contig943 168900..169103 +
1622932700.778853-CDS-F-serratus_M_contig943:171098..1711731622932700.778853-CDS-F-serratus_M_contig943:171098..171173Fucus serratus maleCDSF-serratus_M_contig943 171099..171173 +
1690964429.9860363-CDS-F-serratus_M_contig943:171098..1711731690964429.9860363-CDS-F-serratus_M_contig943:171098..171173Fucus serratus maleCDSF-serratus_M_contig943 171099..171173 +
1622932700.7988467-CDS-F-serratus_M_contig943:171403..1716521622932700.7988467-CDS-F-serratus_M_contig943:171403..171652Fucus serratus maleCDSF-serratus_M_contig943 171404..171652 +
1690964429.997453-CDS-F-serratus_M_contig943:171403..1716521690964429.997453-CDS-F-serratus_M_contig943:171403..171652Fucus serratus maleCDSF-serratus_M_contig943 171404..171652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig943.20796.1

>prot_F-serratus_M_contig943.20796.1 ID=prot_F-serratus_M_contig943.20796.1|Name=mRNA_F-serratus_M_contig943.20796.1|organism=Fucus serratus male|type=polypeptide|length=176bp
MVLIRTLVMTSLLAHIMSSFFVRGNAEPWSTEIPSSASSPFLYYVDVFLG
ESPEPRTLGIRNGQTVIQAAKRFCLENGFDNNLQAAIIPQLAKVLQDGIA
ASIEGNVSTIYDAALPPRYPDQSSMVSEDVDTSMDQSSMASEDMHTSMDQ
SSMVSEDVETSMDQSSMASEDMHTSM
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mRNA from alignment at F-serratus_M_contig943:168515..171652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig943.20796.1 ID=mRNA_F-serratus_M_contig943.20796.1|Name=mRNA_F-serratus_M_contig943.20796.1|organism=Fucus serratus male|type=mRNA|length=3138bp|location=Sequence derived from alignment at F-serratus_M_contig943:168515..171652+ (Fucus serratus male)
GTATCTCTCATAGAGCGACACTTCTACAACTACGCACCACAGTGCTGTGT
GCGCATAATTGATTCTGCTGCTGTTGCTCGAAACGTGCTAACTGGATTCC
TCCAGCCATCGTAGCCCAGTCGGTTGCATCGTTCCGCGATTGAAAACGAC
GTCGTGGGAGCATCAACGCCGAAGTTTCGAACAAGATCCGAAAGATATAC
AGAAGATACAAAACACACGTGATCAGACATACTGAAGTAGACGTACTACA
GTACTGCTGTGTACGACAAAACTAATACTGGTACTGCTTACTGCGGAAAC
AAGGGGTGCTCCACCACGTGGACTCGGCCCACGCGGGATACAAAGTTCAG
ACGTCATATTTATCCTATACGGTCAACCGGGAGTGATGGTTCTGATCAGG
ACTCTGGTGATGACCAGCCTACTGGCACACATCATGTCGAGTTTCTTTGT
CCGCGGGAATGCAGAGCCATGGTCAACCGAAATCCCTTCCTCCGCGTCCT
CTCCCTTCCTGTATTATGTCGACGTGTTTCTGGGAGAATCGCCCGAGCCT
CGAACCTTGGGCATCCGCAATGGACAGACAGTTATTCAAGTGAGCCTTTC
CGTAGATCGCGAAAATATGCCCATATCGACGACATATTATTATCTCAGCA
GCCTCGCCGTACTATTTTTAATGCTAGTAATAGTAGTAAAGCTGTATCAC
TGCTGTTTTGTAACTAAGTGCCGGGAACAGAAATATTTTCTCTTGAGATG
ATATTACTAATAAAATCTCCTGTACCAGTAGGCTCTAGCTCTAATAATGT
AGTCAGTGAGATATTTGGTTTTAATACTAGCACACAAATGAGTACCGTAT
TGGTTTTCTTGAACACTCTGTTTAAAGAAAATCTGAACGCATCTAAACCT
TCGAGTATTGATGGTGAAAATAAAGAAAATCTGGACGCATCTATATAAAT
CTTCTGATCAGTCACAAGGTTTATTAATAGGTGGGAACATCGGCTGTAGG
GACAAAAACCTCTACACATGGTATTAAAAGTGTTCCCCAATGTAACTGCA
TAGGATCAACATTAACGCTCTGTCTATTATGAGTCTAGATAGAGATTAGA
ATAGCTCAATATATTTTCTTCCTTATACCGAAGAAGAAGCAATAACCCTC
CCTCCACCCACAGTTATATGCTCTCATCATCTCATCATATATCTCATCAC
CTCGTCGTGTACAGTACATAGAAAGCAAGGCAGGGCAGGAAGATAGGACA
ATATAATCCTCGGAAGGTTTCGGGGGGAATTACAAATTACAAGAGACGGG
TACAAGTGACGTTTTGAGGTATTACTATATAGGCTGGCTTTGGAGGTAAA
CTTGATTTGAACAATTTTTACAAAGCAAAACATTCAGTTGGGAATAAAAC
AGGGGCAGGTCACTTGTTGAGTTTTTACGTGCAGCACTGGGGGGTGCTAT
AGCAGGGATAAATGAGGGAACATGGGGAGAGATATTGTTAGAATGGGCTT
CACAATGTTCAGCCACCGTGGGTCAGGGATGCATATATGTCGTCTTGATG
GGCTCGGGCGCACAGCCCTGCACGGGTTTAACACATATCCATTATCGTTC
ACTGAGCTCGCTGAGCGTGCTCCGGTATCCACCATACACTAGCACCCATA
CACACAGAAAGACGGAAACACCAGGCGAAGTATATAAGAAACAAGACGCG
TGTACAAAGCACGCGGCTGGACAGGGAGGTATTAACTCCGTCCCCCTGTG
AGTAACGCATAGATAATGATTTCAACTCTCACGTAGTAGAAACTGTGGAC
GCGCTACTTGAACAGAGATTATTAGTAGATCCTTAAGACACTTTCTACGA
TTAGCCCCCCCACCCCAAAAAAATAACTAACGGTACAATGCCATACTGTA
TACGAGATTTTGGCCCTTCTTGCCCCTCTAACTGCCAGTTCGACCTACCG
CACTTGGGAGCTTTCGGGAGTGCAAGGGCCTGGTGTTTTTTCGCTGCCGT
TGCGTTTCTTGTCAACTAGCTAACACCACAAAATATCTGTCTAACTGAGA
ACTAAGAAATCGTCGGTTTGGGGAGGGGCGGGGGTGGCACCGTAGAAACT
GTTGTTCGTGACCAAAAGCGAAATGGGAACGTTGCAGTGATCGTGATTGA
TGAATATTAATACTGTAGTTTTTTAGCGCGTTGATAGGAGTTAGGACCAT
CGGCAGAAGGTGAGAGTAAACAAACAAATAGACGGATTTTTTTTGTATAT
AATACAGAACTAAACACGAGATGACTGAATAGCGACCAAAGCGTGCTTGC
TTTAGCAGCGACAGATGAAGATATGAAGACAGAAAGTGCACGAAAGAGGA
TGAAAGTCTTACAGCAAACATCGCCGCGAGAACAAAGCGCGATCGGCGTA
CGCATCGTTGTGGTGTCTGAGTCAGTATCTTGGTCAAATATGGATCATAC
TACTGGTAATTGACGAAAGCTATATTGAAGTACTTGTCGTCGCACTGCCC
ACACTCTCTTGAAATATTTGAGCCAATGATGCGTCTCTAAAACATAACAA
CACGCCGTTCGGTCTGCTTTTACCTATCTTATAGGCCGCTAAGCGCTTCT
GTCTAGAGAATGGGTTTGACAACAACTTACAAGCCGCGATAATACCACAG
CTTGCCAAGGTGAGACGAACACCGTCAAATGTTGAATAACATTTACTACT
ACTATTGCGGATAAAGAAACTCAAGACTGTCACCGTCCAAACCATCCCTG
GACAGCAGCATCAGTGCACCGTGATACCGCGGCATGGTCTGATGAGCTAC
AACATACGATATGTGTTTGCTCATTTACTTGGGGCATTCGAATGAACTAT
ATAATAACCGTCTGCTTTCAACCTCGATGACTCTCCAAGGTCCTTCAGGA
CGGGATAGCTGCGTCAATCGAAGGCAACGTCTCCACCATATACGACGCAG
CTCTTCCTCCTCGCTACCCAGATCAATCTTCAATGGTGAGTGAAGATGTG
GATACCTCCATGGATCAATCTTCCATGGCGAGTGAAGATATGCACACTTC
CATGGATCAATCTTCAATGGTGAGTGAAGATGTGGAAACCTCCATGGATC
AATCTTCCATGGCGAGTGAAGATATGCACACTTCCATG
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Coding sequence (CDS) from alignment at F-serratus_M_contig943:168515..171652+

>mRNA_F-serratus_M_contig943.20796.1 ID=mRNA_F-serratus_M_contig943.20796.1|Name=mRNA_F-serratus_M_contig943.20796.1|organism=Fucus serratus male|type=CDS|length=1056bp|location=Sequence derived from alignment at F-serratus_M_contig943:168515..171652+ (Fucus serratus male)
ATGGTTCTGATCAGGACTCTGGTGATGACCAGCCTACTGGCACACATCAT
GTCGAGTTTCTTTGTCCGCGGGAATGCAGAGCCATGGTCAACCGAAATCC
CTTCCTCCGCGTCCTCTCCCTTCCTGTATTATGTCGACGTGTTTCTGGGA
GAATCGCCCGAGCCTCGAACCTTGGGCATCCGCAATGGACAGACAGTTAT
TCAAATGGTTCTGATCAGGACTCTGGTGATGACCAGCCTACTGGCACACA
TCATGTCGAGTTTCTTTGTCCGCGGGAATGCAGAGCCATGGTCAACCGAA
ATCCCTTCCTCCGCGTCCTCTCCCTTCCTGTATTATGTCGACGTGTTTCT
GGGAGAATCGCCCGAGCCTCGAACCTTGGGCATCCGCAATGGACAGACAG
TTATTCAAGCCGCTAAGCGCTTCTGTCTAGAGAATGGGTTTGACAACAAC
TTACAAGCCGCGATAATACCACAGCTTGCCAAGGCCGCTAAGCGCTTCTG
TCTAGAGAATGGGTTTGACAACAACTTACAAGCCGCGATAATACCACAGC
TTGCCAAGGTCCTTCAGGACGGGATAGCTGCGTCAATCGAAGGCAACGTC
TCCACCATATACGACGCAGCTCTTCCTCCTCGCTACCCAGATCAATCTTC
AATGGTGAGTGAAGATGTGGATACCTCCATGGATCAATCTTCCATGGCGA
GTGAAGATATGCACACTTCCATGGATCAATCTTCAATGGTGAGTGAAGAT
GTGGAAACCTCCATGGATCAATCTTCCATGGCGAGTGAAGATATGCACAC
TTCCATGGTCCTTCAGGACGGGATAGCTGCGTCAATCGAAGGCAACGTCT
CCACCATATACGACGCAGCTCTTCCTCCTCGCTACCCAGATCAATCTTCA
ATGGTGAGTGAAGATGTGGATACCTCCATGGATCAATCTTCCATGGCGAG
TGAAGATATGCACACTTCCATGGATCAATCTTCAATGGTGAGTGAAGATG
TGGAAACCTCCATGGATCAATCTTCCATGGCGAGTGAAGATATGCACACT
TCCATG
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