mRNA_F-serratus_M_contig931.20712.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig931.20712.1
Unique NamemRNA_F-serratus_M_contig931.20712.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig931.20712.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig931contigF-serratus_M_contig931:279912..280729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size819
Cds size456
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932685.7169733-UTR-F-serratus_M_contig931:279911..2802731622932685.7169733-UTR-F-serratus_M_contig931:279911..280273Fucus serratus maleUTRF-serratus_M_contig931 279912..280273 +
1690964421.9670906-UTR-F-serratus_M_contig931:279911..2802731690964421.9670906-UTR-F-serratus_M_contig931:279911..280273Fucus serratus maleUTRF-serratus_M_contig931 279912..280273 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932685.7318096-CDS-F-serratus_M_contig931:280273..2807291622932685.7318096-CDS-F-serratus_M_contig931:280273..280729Fucus serratus maleCDSF-serratus_M_contig931 280274..280729 +
1690964421.9784243-CDS-F-serratus_M_contig931:280273..2807291690964421.9784243-CDS-F-serratus_M_contig931:280273..280729Fucus serratus maleCDSF-serratus_M_contig931 280274..280729 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig931.20712.1prot_F-serratus_M_contig931.20712.1Fucus serratus malepolypeptideF-serratus_M_contig931 280274..280729 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig931.20712.1

>prot_F-serratus_M_contig931.20712.1 ID=prot_F-serratus_M_contig931.20712.1|Name=mRNA_F-serratus_M_contig931.20712.1|organism=Fucus serratus male|type=polypeptide|length=152bp
MENIPLFEYMMKMGCTHSETSNALHHALKKKKYSGGALEAILFDLDEDRE
RRETQMDAIEAANALRLKEMVFVLTKVEVAAWRRMTGSDRAEVLERDGRP
LTPEEYTTFLKDEVDELRDAIFLSEPERDCKRMKRFMRELMRGRIIMQVT
DD
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mRNA from alignment at F-serratus_M_contig931:279912..280729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig931.20712.1 ID=mRNA_F-serratus_M_contig931.20712.1|Name=mRNA_F-serratus_M_contig931.20712.1|organism=Fucus serratus male|type=mRNA|length=818bp|location=Sequence derived from alignment at F-serratus_M_contig931:279912..280729+ (Fucus serratus male)
CAACCGGGACCATAATAATGAATATATGTTAGACCTATGCAGGGCTGAAC
GCCCGACTCCATCAAGACGTGACATAAACAATCACGCTTAGCGGCGAAGG
ACTTGAAGTAAAACGTCTGTTGATGGAGAGGTAGAGCTGGGAAGAAGAGA
GAACCGTTGAGGAGATCGGAGAGCGGGAAATCCGCTGAAGAGAGAAGATA
ACCGCCGGACAAGAGCGAAGAGCGTAGAAGATTCCGCTGAAGAGAGGAGA
ACACCGCTAGGAAAGCGAAGAGCGGGGATTCCGCTGGAGTAAGGAGATAC
ATTTTTATAGCTGGGAACCGGGCGCTGGAACTGGAGCAGACGTCAAAAAT
ACACTGTGAGTCATGGAGAACATACCACTTTTTGAATACATGATGAAGAT
GGGGTGCACTCACTCGGAAACAAGTAACGCACTTCATCACGCCTTGAAAA
AGAAGAAGTATTCGGGAGGTGCATTGGAGGCCATCCTTTTTGATTTGGAT
GAGGACAGAGAGCGTAGGGAGACGCAAATGGACGCCATTGAGGCCGCTAA
CGCACTTCGCTTGAAGGAGATGGTATTTGTTTTGACGAAAGTAGAGGTGG
CTGCTTGGCGAAGGATGACTGGTTCCGATCGCGCCGAAGTGTTGGAACGG
GACGGCCGACCCTTGACACCTGAAGAATATACTACTTTTTTGAAGGATGA
GGTGGACGAGTTGAGAGATGCCATCTTTCTGTCTGAACCAGAAAGGGATT
GCAAAAGGATGAAAAGGTTCATGCGGGAGCTCATGCGGGGAAGGATAATA
ATGCAGGTCACCGACGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig931:279912..280729+

>mRNA_F-serratus_M_contig931.20712.1 ID=mRNA_F-serratus_M_contig931.20712.1|Name=mRNA_F-serratus_M_contig931.20712.1|organism=Fucus serratus male|type=CDS|length=912bp|location=Sequence derived from alignment at F-serratus_M_contig931:279912..280729+ (Fucus serratus male)
ATGGAGAACATACCACTTTTTGAATACATGATGAAGATGGGGTGCACTCA
CTCGGAAACAAGTAACGCACTTCATCACGCCTTGAAAAAGAAGAAGTATT
CGGGAGGTGCATTGGAGGCCATCCTTTTTGATTTGGATGAGGACAGAGAG
CGTAGGGAGACGCAAATGGACGCCATTGAGGCCGCTAACGCACTTCGCTT
GAAGGAGATGGTATTTGTTTTGACGAAAGTAGAGGTGGCTGCTTGGCGAA
GGATGACTGGTTCCGATCGCGCCGAAGTGTTGGAACGGGACGGCCGACCC
TTGACACCTGAAGAATATACTACTTTTTTGAAGGATGAGGTGGACGAGTT
GAGAGATGCCATCTTTCTGTCTGAACCAGAAAGGGATTGCAAAAGGATGA
AAAGGTTCATGCGGGAGCTCATGCGGGGAAGGATAATAATGCAGGTCACC
GACGACATGGAGAACATACCACTTTTTGAATACATGATGAAGATGGGGTG
CACTCACTCGGAAACAAGTAACGCACTTCATCACGCCTTGAAAAAGAAGA
AGTATTCGGGAGGTGCATTGGAGGCCATCCTTTTTGATTTGGATGAGGAC
AGAGAGCGTAGGGAGACGCAAATGGACGCCATTGAGGCCGCTAACGCACT
TCGCTTGAAGGAGATGGTATTTGTTTTGACGAAAGTAGAGGTGGCTGCTT
GGCGAAGGATGACTGGTTCCGATCGCGCCGAAGTGTTGGAACGGGACGGC
CGACCCTTGACACCTGAAGAATATACTACTTTTTTGAAGGATGAGGTGGA
CGAGTTGAGAGATGCCATCTTTCTGTCTGAACCAGAAAGGGATTGCAAAA
GGATGAAAAGGTTCATGCGGGAGCTCATGCGGGGAAGGATAATAATGCAG
GTCACCGACGAC
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