mRNA_F-serratus_M_contig931.20710.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig931.20710.1
Unique NamemRNA_F-serratus_M_contig931.20710.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig931.20710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig931contigF-serratus_M_contig931:206658..206909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-13_002380.1
Exons1
Model size252
Cds size186
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932686.7599063-UTR-F-serratus_M_contig931:206657..2067231622932686.7599063-UTR-F-serratus_M_contig931:206657..206723Fucus serratus maleUTRF-serratus_M_contig931 206658..206723 -
1690964422.4949954-UTR-F-serratus_M_contig931:206657..2067231690964422.4949954-UTR-F-serratus_M_contig931:206657..206723Fucus serratus maleUTRF-serratus_M_contig931 206658..206723 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932686.8100185-CDS-F-serratus_M_contig931:206723..2069091622932686.8100185-CDS-F-serratus_M_contig931:206723..206909Fucus serratus maleCDSF-serratus_M_contig931 206724..206909 -
1690964422.508168-CDS-F-serratus_M_contig931:206723..2069091690964422.508168-CDS-F-serratus_M_contig931:206723..206909Fucus serratus maleCDSF-serratus_M_contig931 206724..206909 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig931.20710.1prot_F-serratus_M_contig931.20710.1Fucus serratus malepolypeptideF-serratus_M_contig931 206724..206909 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig931.20710.1

>prot_F-serratus_M_contig931.20710.1 ID=prot_F-serratus_M_contig931.20710.1|Name=mRNA_F-serratus_M_contig931.20710.1|organism=Fucus serratus male|type=polypeptide|length=62bp
MGALDLLHDESQKRQQGTCDWCRNRPLQMRTCRHHLRDLLEAAAEGGMRA
GQRAVIGGPPG*
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mRNA from alignment at F-serratus_M_contig931:206658..206909-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig931.20710.1 ID=mRNA_F-serratus_M_contig931.20710.1|Name=mRNA_F-serratus_M_contig931.20710.1|organism=Fucus serratus male|type=mRNA|length=252bp|location=Sequence derived from alignment at F-serratus_M_contig931:206658..206909- (Fucus serratus male)
ATGGGCGCGTTGGACCTGCTGCATGATGAGTCGCAGAAGAGACAGCAAGG
GACCTGCGATTGGTGCCGTAATCGCCCCCTTCAGATGAGGACTTGTCGGC
ACCATCTACGCGACTTGCTGGAAGCGGCGGCCGAAGGCGGGATGCGCGCA
GGACAGAGAGCGGTGATAGGAGGCCCTCCAGGGTAACTTCTCCGCGCGGC
TTTCAAAACTACGCGGTGTCTGGAGTCCAACCTCCGATCGGTGAGAGAGA
GG
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Coding sequence (CDS) from alignment at F-serratus_M_contig931:206658..206909-

>mRNA_F-serratus_M_contig931.20710.1 ID=mRNA_F-serratus_M_contig931.20710.1|Name=mRNA_F-serratus_M_contig931.20710.1|organism=Fucus serratus male|type=CDS|length=372bp|location=Sequence derived from alignment at F-serratus_M_contig931:206658..206909- (Fucus serratus male)
ATGGGCGCGTTGGACCTGCTGCATGATGAGTCGCAGAAGAGACAGCAAGG
GACCTGCGATTGGTGCCGTAATCGCCCCCTTCAGATGAGGACTTGTCGGC
ACCATCTACGCGACTTGCTGGAAGCGGCGGCCGAAGGCGGGATGCGCGCA
GGACAGAGAGCGGTGATAGGAGGCCCTCCAGGGTAAATGGGCGCGTTGGA
CCTGCTGCATGATGAGTCGCAGAAGAGACAGCAAGGGACCTGCGATTGGT
GCCGTAATCGCCCCCTTCAGATGAGGACTTGTCGGCACCATCTACGCGAC
TTGCTGGAAGCGGCGGCCGAAGGCGGGATGCGCGCAGGACAGAGAGCGGT
GATAGGAGGCCCTCCAGGGTAA
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