mRNA_F-serratus_M_contig931.20709.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig931.20709.1
Unique NamemRNA_F-serratus_M_contig931.20709.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig931.20709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig931contigF-serratus_M_contig931:197074..198544 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size371
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig931.20709.1prot_F-serratus_M_contig931.20709.1Fucus serratus malepolypeptideF-serratus_M_contig931 197791..198535 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932686.6472127-UTR-F-serratus_M_contig931:197073..1972141622932686.6472127-UTR-F-serratus_M_contig931:197073..197214Fucus serratus maleUTRF-serratus_M_contig931 197074..197214 -
1690964422.4299285-UTR-F-serratus_M_contig931:197073..1972141690964422.4299285-UTR-F-serratus_M_contig931:197073..197214Fucus serratus maleUTRF-serratus_M_contig931 197074..197214 -
1622932686.6629615-UTR-F-serratus_M_contig931:197746..1977901622932686.6629615-UTR-F-serratus_M_contig931:197746..197790Fucus serratus maleUTRF-serratus_M_contig931 197747..197790 -
1690964422.4495864-UTR-F-serratus_M_contig931:197746..1977901690964422.4495864-UTR-F-serratus_M_contig931:197746..197790Fucus serratus maleUTRF-serratus_M_contig931 197747..197790 -
1622932686.7129655-UTR-F-serratus_M_contig931:198535..1985441622932686.7129655-UTR-F-serratus_M_contig931:198535..198544Fucus serratus maleUTRF-serratus_M_contig931 198536..198544 -
1690964422.478372-UTR-F-serratus_M_contig931:198535..1985441690964422.478372-UTR-F-serratus_M_contig931:198535..198544Fucus serratus maleUTRF-serratus_M_contig931 198536..198544 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932686.6778631-CDS-F-serratus_M_contig931:197790..1978921622932686.6778631-CDS-F-serratus_M_contig931:197790..197892Fucus serratus maleCDSF-serratus_M_contig931 197791..197892 -
1690964422.458682-CDS-F-serratus_M_contig931:197790..1978921690964422.458682-CDS-F-serratus_M_contig931:197790..197892Fucus serratus maleCDSF-serratus_M_contig931 197791..197892 -
1622932686.6923435-CDS-F-serratus_M_contig931:198460..1985351622932686.6923435-CDS-F-serratus_M_contig931:198460..198535Fucus serratus maleCDSF-serratus_M_contig931 198461..198535 -
1690964422.4695675-CDS-F-serratus_M_contig931:198460..1985351690964422.4695675-CDS-F-serratus_M_contig931:198460..198535Fucus serratus maleCDSF-serratus_M_contig931 198461..198535 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig931.20709.1

>prot_F-serratus_M_contig931.20709.1 ID=prot_F-serratus_M_contig931.20709.1|Name=mRNA_F-serratus_M_contig931.20709.1|organism=Fucus serratus male|type=polypeptide|length=59bp
MHKSTAKGMWWVKMTEMKSKTQRRKKYASATCPFSARLDHALGSAAGRQR
SMCFSGGG*
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mRNA from alignment at F-serratus_M_contig931:197074..198544-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig931.20709.1 ID=mRNA_F-serratus_M_contig931.20709.1|Name=mRNA_F-serratus_M_contig931.20709.1|organism=Fucus serratus male|type=mRNA|length=1471bp|location=Sequence derived from alignment at F-serratus_M_contig931:197074..198544- (Fucus serratus male)
GTGGCACAAATGCACAAATCCACCGCGAAGGGAATGTGGTGGGTGAAGAT
GACGGAGATGAAAAGCAAGACACAGCGCAGAAAGGTCAGGAATAGGCTAC
GGAGAAAGCTCATGCGTCTCTTGTTCCGCTCCATCTCGGCGCCGCTGCTG
CGCGGTGCTGCTGATGTAGTATGTAAAACGCAAAGAGGTTGGTTGAAGGT
GTGCGGTTGCCCTGCAGACACGTATCTGATCTCGACTCTCCGTGCAAAGC
GCAAGGGCAAAGGGAACCAACCCTAAACCAATCTCTAGAACCCTTTCCAT
GGAAAGGCACGCTGATGCGTACCTCGCCGAACCTGTGTAGTGTCTGCACT
CCCGTGTAGGCAGGCATCCGAAACACGTATTTTCGAACTGGTGCGGCTCT
TTCTTGTTTTTGTGTTGTGCGCGTATTATTCATGGAGAATTTAAGACCCG
TGAGAAACACGGGACCAGGTTTTAAAACAAAATGCCTGGCAAGGCTGTAG
GTACCAACAGGAGTGATCGGAAAACGTGTAAGTTGGATCATGTTGTATCC
ACGGTTTATCCATTCCACTTGTTTTCCTCCTAAGATTCAGCTCTCTCTCT
CTCTGTGGTAACTCTCCCATTCTCCCGCCCTTTTGGCGCTCTCCTTCACA
AGAAGTACGCCAGCGCGACCTGTCCCTTTTCGGCGCGGCTAGATCACGCG
CTTGGATCCGCTGCTGGTCGGCAGAGATCCATGTGCTTCTCAGGCGGGGG
ATAGATCTTGTCTGGTGAAAGCAAAGCAGGCAAAGTTCCCTTCTTCAGGT
GTGGTATTATATTCCAGCGCGGCACGATATGCACCTTTACGTTGCCGCTG
AACCCAATGTGTCGCACTATGTTGACCTGCTTCAATGGTATCCTTGCTCT
ACACATATCCCTCACTCATTTCTGTCCAACGGTACTTTCATGCAAACTTC
CAAACTGATACTGTATCTTTGAACCCTGCGCCACCCGAAACGGCATTCGA
AATACAAACGTTTTTACTTTTGCAGCTCTCGTGTGTTGAAAGGAGACACA
TCTTGTTTGTTCACGGAGCGGTGATCCATGGTGGTCTGCACGTGCTGGAG
GAGTAAAGTGACCTTGAAGCAAGGTGCCTCTTCTGCAGCGTGACAGGGGG
CAAGGCCAGAGATGCTCAGAAGGCCGCGTGTTGCCTCCGCTCGCTCGTTT
CAACCTCACCCCGTGATTATTTTATTTCGTTTGATGTGCTATTTCCCACC
CCTTCGCTCACTTTCTCCATTTCTCTCTCTCACTCTCTCTCTCAATAGGT
GTCTCTCTCTCCCCCCCCCCGACATCACAGCTTTGGAAGCGCGCCACGAG
CGACTACCCGTGCCCTTTTTGGTCGCGGCTGGATTGCGCTTGGTACTGTG
ATCATAAATCCGCTGCTGATCGGCGGGTTCTCGTTCTTTTGGCGAGGGGA
ACAAGAAGATCTTGTCGGTGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig931:197074..198544-

>mRNA_F-serratus_M_contig931.20709.1 ID=mRNA_F-serratus_M_contig931.20709.1|Name=mRNA_F-serratus_M_contig931.20709.1|organism=Fucus serratus male|type=CDS|length=354bp|location=Sequence derived from alignment at F-serratus_M_contig931:197074..198544- (Fucus serratus male)
ATGCACAAATCCACCGCGAAGGGAATGTGGTGGGTGAAGATGACGGAGAT
GAAAAGCAAGACACAGCGCAGAAAGATGCACAAATCCACCGCGAAGGGAA
TGTGGTGGGTGAAGATGACGGAGATGAAAAGCAAGACACAGCGCAGAAAG
AAGTACGCCAGCGCGACCTGTCCCTTTTCGGCGCGGCTAGATCACGCGCT
TGGATCCGCTGCTGGTCGGCAGAGATCCATGTGCTTCTCAGGCGGGGGAT
AGAAGTACGCCAGCGCGACCTGTCCCTTTTCGGCGCGGCTAGATCACGCG
CTTGGATCCGCTGCTGGTCGGCAGAGATCCATGTGCTTCTCAGGCGGGGG
ATAG
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