mRNA_F-serratus_M_contig931.20707.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig931.20707.1
Unique NamemRNA_F-serratus_M_contig931.20707.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig931.20707.1 vs. uniprot
Match: D7FXB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB5_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 4.830e-37
Identity = 64/106 (60.38%), Postives = 80/106 (75.47%), Query Frame = 1
Query:   19 SMVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHILDSDLRTKNYMHMSFADDNLLL*-PSFTPRSK 333
            S+ DSLP MMYG GD++HPLPETVA MQ +V +YV++VT +AC AAEVKG+LDTECFV AVR+DK KFKRVK +LD ++  KN     + DDNL +  P+F  R K
Sbjct:   23 SIADSLPMMMYGFGDEQHPLPETVAYMQEVVGEYVQYVTDKACKAAEVKGKLDTECFVLAVRNDKAKFKRVKELLDMNVHIKNCTRQRYVDDNLTVYHPTFVTRPK 128          
BLAST of mRNA_F-serratus_M_contig931.20707.1 vs. uniprot
Match: A0A3R7KXI2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KXI2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.440e-16
Identity = 35/91 (38.46%), Postives = 58/91 (63.74%), Query Frame = 1
Query:   13 GESMVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHILDSDLRTKNYMHMSF 285
            G  +V+S+  MM+G GD+  PL ET A M+ LV +YV  +T +A   A +KG+LDTECF+F +R D  +++R+  +L ++   +  ++  F
Sbjct:   76 GGELVESIKHMMFGFGDEAEPLDETAALMEDLVVEYVHAMTKKAMEMATIKGKLDTECFIFLIRKDPERYERISELLRANDEFRAVLNSGF 166          
BLAST of mRNA_F-serratus_M_contig931.20707.1 vs. uniprot
Match: Q8QN96_ESV1K (EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN96_ESV1K)

HSP 1 Score: 73.9 bits (180), Expect = 2.190e-15
Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1
Query:   43 MMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAA 156
            MMYGAGDDEHPLPETVACMQ LVA+YV HVTSEAC+ +
Sbjct:    9 MMYGAGDDEHPLPETVACMQQLVAEYVSHVTSEACLVS 46          
BLAST of mRNA_F-serratus_M_contig931.20707.1 vs. uniprot
Match: F0WG55_9STRA (Uncharacterized protein AlNc14C88G5585 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG55_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.230e-15
Identity = 37/92 (40.22%), Postives = 58/92 (63.04%), Query Frame = 1
Query:   31 SLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHILDSDLRTKNYMHMSF--ADDNL 300
            S+  MM G GDD  P+ E+VA M+  V +Y+  +T +A   + VKG+LDTECF+F +R D+ K+ RVK +L ++   K  ++  F  AD+ +
Sbjct:   58 SVRDMMIGFGDDMEPMEESVAVMKEFVVEYIHCMTKKAVDVSAVKGKLDTECFIFTIRKDQEKYGRVKDLLQANDELKEVLNSGFDPADEKV 149          
BLAST of mRNA_F-serratus_M_contig931.20707.1 vs. uniprot
Match: D8LPL2_ECTSI (EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL2_ECTSI)

HSP 1 Score: 72.4 bits (176), Expect = 7.230e-15
Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1
Query:   43 MMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAA 156
            MMYGAGDDEHPLPETV CMQ LVA+YV HVTSEAC+ +
Sbjct:    1 MMYGAGDDEHPLPETVGCMQQLVAEYVSHVTSEACLVS 38          
BLAST of mRNA_F-serratus_M_contig931.20707.1 vs. uniprot
Match: A0A5D6XFL5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFL5_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 1.100e-14
Identity = 32/88 (36.36%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   22 MVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHILDSDLRTKNYMHMSF 285
            +++S+  MM+G GD+  PL ET A M+ +  +YV  +T +A   A+VKG+LDTECF+F +R D  +++R+  +L ++   +  ++  F
Sbjct:  116 LIESIKHMMFGFGDEVEPLDETAALMEDMTVEYVHAMTKKALDLAQVKGKLDTECFIFLIRKDPERYERIAELLRANDELRAVLNSGF 203          
BLAST of mRNA_F-serratus_M_contig931.20707.1 vs. uniprot
Match: Q8QN93_ESV1K (EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN93_ESV1K)

HSP 1 Score: 72.0 bits (175), Expect = 2.170e-14
Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1
Query:   40 AMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAA 156
            +MMYGAGDDEHPLPETV CMQ LVA+YV HVTSEAC+ +
Sbjct:   31 SMMYGAGDDEHPLPETVDCMQQLVAEYVSHVTSEACLVS 69          
BLAST of mRNA_F-serratus_M_contig931.20707.1 vs. uniprot
Match: A0A024GE83_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GE83_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.480e-14
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   22 MVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHILDSDLRTKNYMHMSF--ADDNL 300
            + DS+  MM G GD   P+ E++  MQ  V +Y++ +T +A   A VKG+LDTECF+F +R D   ++RVK +L ++   K  ++  F  AD+ +
Sbjct:   55 LSDSVRDMMIGFGDHMEPMEESIIVMQDFVVEYIQCMTKKAVDIATVKGKLDTECFIFPIRKDHETYERVKDLLQANGELKEVLNSGFDPADEKV 149          
BLAST of mRNA_F-serratus_M_contig931.20707.1 vs. uniprot
Match: A0A8K1CG97_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CG97_PYTOL)

HSP 1 Score: 74.7 bits (182), Expect = 2.680e-14
Identity = 32/88 (36.36%), Postives = 57/88 (64.77%), Query Frame = 1
Query:   22 MVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHILDSDLRTKNYMHMSF 285
            +V+++  MM+G GD+  PL ET   M+ LV +Y + +T +A   + VKG+LDTECF+F +R D  +++R+K +L ++   +  ++  F
Sbjct:   91 LVETIKHMMFGFGDEAEPLDETAELMEDLVVEYAQSMTKKAMELSLVKGKLDTECFIFLIRKDPERYERIKELLRANDEFRAVLNSGF 178          
BLAST of mRNA_F-serratus_M_contig931.20707.1 vs. uniprot
Match: A0A2P4X0B0_9STRA (Transcription initiation factor TFIID subunit TAF13 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X0B0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 2.880e-14
Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1
Query:   22 MVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHIL 243
            +V+S+  M++G GD+  PL ET   M+ LV +YV  +T +A   A +KG+LDTECF+F +R D  ++ R+  +L
Sbjct:   32 LVESIKHMLFGFGDEVEPLDETAELMEDLVVEYVHAMTKKAMELATIKGKLDTECFIFLIRKDPERYDRIAELL 105          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig931.20707.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXB5_ECTSI4.830e-3760.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A3R7KXI2_9STRA3.440e-1638.46Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
Q8QN96_ESV1K2.190e-1584.21EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
F0WG55_9STRA2.230e-1540.22Uncharacterized protein AlNc14C88G5585 n=1 Tax=Alb... [more]
D8LPL2_ECTSI7.230e-1581.58EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A5D6XFL5_9STRA1.100e-1436.36Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
Q8QN93_ESV1K2.170e-1479.49EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A024GE83_9STRA2.480e-1437.89Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A8K1CG97_PYTOL2.680e-1436.36Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4X0B0_9STRA2.880e-1441.89Transcription initiation factor TFIID subunit TAF1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig931contigF-serratus_M_contig931:191343..191929 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue3.3e-28
Seed eggNOG ortholog2880.D7FXB5
Preferred nameTAF13
KEGG koko:K00521,ko:K03127
KEGG Pathwayko03022,ko05168,map03022,map05168
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0000988,GO:0000990,GO:0000991,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003700,GO:0003712,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005694,GO:0005730,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0007275,GO:0008022,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009791,GO:0009793,GO:0009888,GO:0009889,GO:0009960,GO:0009966,GO:0009987,GO:0010154,GO:0010467,GO:0010468,GO:0010556,GO:0010646,GO:0016043,GO:0016070,GO:0016073,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022414,GO:0022607,GO:0023051,GO:0030880,GO:0031323,GO:0031326,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044798,GO:0046483,GO:0048316,GO:0048583,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051123,GO:0051171,GO:0051252,GO:0055029,GO:0060255,GO:0061458,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070897,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090575,GO:0097159,GO:0097659,GO:0098781,GO:0140110,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901796,GO:1902494,GO:1902531,GO:1903506,GO:1990234,GO:2000112,GO:2001141
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG5248@1,KOG3901@2759
EC1.16.1.7
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03021
Exons3
Model size350
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig931.20707.1prot_F-serratus_M_contig931.20707.1Fucus serratus malepolypeptideF-serratus_M_contig931 191384..191929 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932686.5498862-UTR-F-serratus_M_contig931:191342..1913831622932686.5498862-UTR-F-serratus_M_contig931:191342..191383Fucus serratus maleUTRF-serratus_M_contig931 191343..191383 -
1690964422.3822036-UTR-F-serratus_M_contig931:191342..1913831690964422.3822036-UTR-F-serratus_M_contig931:191342..191383Fucus serratus maleUTRF-serratus_M_contig931 191343..191383 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622932686.5702374-CDS-F-serratus_M_contig931:191383..1915421622932686.5702374-CDS-F-serratus_M_contig931:191383..191542Fucus serratus maleCDSF-serratus_M_contig931 191384..191542 -
1690964422.3936112-CDS-F-serratus_M_contig931:191383..1915421690964422.3936112-CDS-F-serratus_M_contig931:191383..191542Fucus serratus maleCDSF-serratus_M_contig931 191384..191542 -
1622932686.5850124-CDS-F-serratus_M_contig931:191664..1917731622932686.5850124-CDS-F-serratus_M_contig931:191664..191773Fucus serratus maleCDSF-serratus_M_contig931 191665..191773 -
1690964422.40296-CDS-F-serratus_M_contig931:191664..1917731690964422.40296-CDS-F-serratus_M_contig931:191664..191773Fucus serratus maleCDSF-serratus_M_contig931 191665..191773 -
1622932686.6038547-CDS-F-serratus_M_contig931:191888..1919291622932686.6038547-CDS-F-serratus_M_contig931:191888..191929Fucus serratus maleCDSF-serratus_M_contig931 191889..191929 -
1690964422.4151933-CDS-F-serratus_M_contig931:191888..1919291690964422.4151933-CDS-F-serratus_M_contig931:191888..191929Fucus serratus maleCDSF-serratus_M_contig931 191889..191929 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig931.20707.1

>prot_F-serratus_M_contig931.20707.1 ID=prot_F-serratus_M_contig931.20707.1|Name=mRNA_F-serratus_M_contig931.20707.1|organism=Fucus serratus male|type=polypeptide|length=103bp
MEGDGESMVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACM
AAEVKGRLDTECFVFAVRHDKPKFKRVKHILDSDLRTKNYMHMSFADDNL
LL*
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mRNA from alignment at F-serratus_M_contig931:191343..191929-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig931.20707.1 ID=mRNA_F-serratus_M_contig931.20707.1|Name=mRNA_F-serratus_M_contig931.20707.1|organism=Fucus serratus male|type=mRNA|length=587bp|location=Sequence derived from alignment at F-serratus_M_contig931:191343..191929- (Fucus serratus male)
ATGGAAGGGGATGGTGAATCGATGGTGGACAGTTTGCCAGCGTAAGTGGG TATGTTACAACAGAAGCGATGCTGTTGTCACATGATCTTCGCGTCGACCG TCGTTTTAAACAAAGATCTGATTAATTTTTCGTGAACGACAATCTCTCTG TTACAGGATGATGTACGGCGCCGGAGATGACGAGCACCCGTTGCCGGAAA CGGTGGCTTGTATGCAGCACCTGGTCGCGGATTACGTGAGACACGTCACG TCGGAGGCGTGTATGGTGAGATTCCAATCATTAAGCTACCTTACGAAATT GGAGTTGCGTTCGCACTGTCAGTTCGTCTTGTAATAGATGGATTAACGAC TAATTTAATCTATACTTTCCCAAATATATGTAAACAGGCTGCAGAAGTCA AGGGCAGGCTGGATACCGAGTGCTTCGTCTTTGCCGTCCGCCACGATAAA CCCAAGTTCAAGCGGGTCAAGCACATTCTGGACAGCGACTTGCGCACGAA GAACTACATGCACATGAGCTTCGCGGACGACAATCTACTATTATAGCCAT CTTTCACCCCTCGTTCGAAGCCGTGTCGCCACCGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig931:191343..191929-

>mRNA_F-serratus_M_contig931.20707.1 ID=mRNA_F-serratus_M_contig931.20707.1|Name=mRNA_F-serratus_M_contig931.20707.1|organism=Fucus serratus male|type=CDS|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig931:191343..191929- (Fucus serratus male)
ATGGAAGGGGATGGTGAATCGATGGTGGACAGTTTGCCAGCATGGAAGGG
GATGGTGAATCGATGGTGGACAGTTTGCCAGCGATGATGTACGGCGCCGG
AGATGACGAGCACCCGTTGCCGGAAACGGTGGCTTGTATGCAGCACCTGG
TCGCGGATTACGTGAGACACGTCACGTCGGAGGCGTGTATGGATGATGTA
CGGCGCCGGAGATGACGAGCACCCGTTGCCGGAAACGGTGGCTTGTATGC
AGCACCTGGTCGCGGATTACGTGAGACACGTCACGTCGGAGGCGTGTATG
GCTGCAGAAGTCAAGGGCAGGCTGGATACCGAGTGCTTCGTCTTTGCCGT
CCGCCACGATAAACCCAAGTTCAAGCGGGTCAAGCACATTCTGGACAGCG
ACTTGCGCACGAAGAACTACATGCACATGAGCTTCGCGGACGACAATCTA
CTATTATAGGCTGCAGAAGTCAAGGGCAGGCTGGATACCGAGTGCTTCGT
CTTTGCCGTCCGCCACGATAAACCCAAGTTCAAGCGGGTCAAGCACATTC
TGGACAGCGACTTGCGCACGAAGAACTACATGCACATGAGCTTCGCGGAC
GACAATCTACTATTATAG
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